data_6E7P
#
_model_server_result.job_id            SkXv_iHCeUYbFS-9uVY5GA 
_model_server_result.datetime_utc      '2024-10-19 12:29:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e7p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    6E7P 
#
_exptl.entry_id    6E7P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              750.598 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 166 A CYS 166 1_555 A SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 253 A CYS 253 1_555 A SG CYS 284 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 B SG CYS 166 B CYS 166 1_555 B SG CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 253 B CYS 253 1_555 B SG CYS 284 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 C SG CYS 166 C CYS 166 1_555 C SG CYS 192 C CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 C SG CYS 253 C CYS 253 1_555 C SG CYS 284 C CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 D SG CYS 166 D CYS 166 1_555 D SG CYS 192 D CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf8 D SG CYS 253 D CYS 253 1_555 D SG CYS 284 D CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C25 H53 O19 P3' 
_chem_comp.formula_weight    750.598 
_chem_comp.id                HZ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6E7P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HZ7 A 1 801 801 HZ7 PIP . 
F 2 HZ7 B 1 801 801 HZ7 PIP . 
G 2 HZ7 C 1 801 801 HZ7 PIP . 
H 2 HZ7 D 1 801 801 HZ7 PIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 HZ7 . . . G 2 118.497 159.863 178.975 1 143.27 ? C2 HZ7 801 C 1 
HETATM 2 C C3 HZ7 . . . G 2 117.031 159.568 179.274 1 143.27 ? C3 HZ7 801 C 1 
HETATM 3 C C4 HZ7 . . . G 2 116.699 159.775 180.747 1 143.27 ? C4 HZ7 801 C 1 
HETATM 4 C C5 HZ7 . . . G 2 117.243 161.053 181.398 1 143.27 ? C5 HZ7 801 C 1 
HETATM 5 C C6 HZ7 . . . G 2 118.192 161.899 180.538 1 143.27 ? C6 HZ7 801 C 1 
HETATM 6 C C1 HZ7 . . . G 2 119.151 161.027 179.724 1 143.27 ? C1 HZ7 801 C 1 
HETATM 7 C C10 HZ7 . . . G 2 110.436 161.548 183.043 1 143.27 ? C10 HZ7 801 C 1 
HETATM 8 C C11 HZ7 . . . G 2 110.102 160.396 182.101 1 143.27 ? C11 HZ7 801 C 1 
HETATM 9 C C12 HZ7 . . . G 2 113.235 160.118 186.797 1 143.27 ? C12 HZ7 801 C 1 
HETATM 10 C C13 HZ7 . . . G 2 112.187 161.001 187.469 1 143.27 ? C13 HZ7 801 C 1 
HETATM 11 C C14 HZ7 . . . G 2 108.691 159.865 182.318 1 143.27 ? C14 HZ7 801 C 1 
HETATM 12 C C15 HZ7 . . . G 2 108.483 158.571 181.543 1 143.27 ? C15 HZ7 801 C 1 
HETATM 13 C C16 HZ7 . . . G 2 108.243 158.835 180.065 1 143.27 ? C16 HZ7 801 C 1 
HETATM 14 C C17 HZ7 . . . G 2 106.787 159.205 179.822 1 143.27 ? C17 HZ7 801 C 1 
HETATM 15 C C18 HZ7 . . . G 2 106.451 159.115 178.34 1 143.27 ? C18 HZ7 801 C 1 
HETATM 16 C C19 HZ7 . . . G 2 106.639 157.708 177.821 1 143.27 ? C19 HZ7 801 C 1 
HETATM 17 C C20 HZ7 . . . G 2 111.401 160.197 188.498 1 143.27 ? C20 HZ7 801 C 1 
HETATM 18 C C21 HZ7 . . . G 2 110.121 160.919 188.899 1 143.27 ? C21 HZ7 801 C 1 
HETATM 19 C C22 HZ7 . . . G 2 109.25 161.206 187.684 1 143.27 ? C22 HZ7 801 C 1 
HETATM 20 C C23 HZ7 . . . G 2 107.777 161.069 188.042 1 143.27 ? C23 HZ7 801 C 1 
HETATM 21 C C24 HZ7 . . . G 2 106.907 161.145 186.796 1 143.27 ? C24 HZ7 801 C 1 
HETATM 22 C C25 HZ7 . . . G 2 107.266 160.052 185.815 1 143.27 ? C25 HZ7 801 C 1 
HETATM 23 C C7 HZ7 . . . G 2 113.71 160.298 182.884 1 143.27 ? C7 HZ7 801 C 1 
HETATM 24 C C8 HZ7 . . . G 2 112.621 160.934 183.738 1 143.27 ? C8 HZ7 801 C 1 
HETATM 25 C C9 HZ7 . . . G 2 113.26 161.683 184.902 1 143.27 ? C9 HZ7 801 C 1 
HETATM 26 O O1 HZ7 . . . G 2 117.473 162.801 179.691 1 143.27 ? O1 HZ7 801 C 1 
HETATM 27 O O10 HZ7 . . . G 2 122.009 162.373 177.552 1 143.27 ? O10 HZ7 801 C 1 
HETATM 28 O O11 HZ7 . . . G 2 121.712 160.097 178.481 1 143.27 ? O11 HZ7 801 C 1 
HETATM 29 O O12 HZ7 . . . G 2 120.419 160.844 176.498 1 143.27 ? O12 HZ7 801 C 1 
HETATM 30 O O13 HZ7 . . . G 2 114.971 158.178 177.939 1 143.27 ? O13 HZ7 801 C 1 
HETATM 31 O O14 HZ7 . . . G 2 114.686 160.061 176.383 1 143.27 ? O14 HZ7 801 C 1 
HETATM 32 O O15 HZ7 . . . G 2 113.643 160.119 178.639 1 143.27 ? O15 HZ7 801 C 1 
HETATM 33 O O16 HZ7 . . . G 2 113.976 160.792 185.762 1 143.27 ? O16 HZ7 801 C 1 
HETATM 34 O O17 HZ7 . . . G 2 111.833 161.841 182.97 1 143.27 ? O17 HZ7 801 C 1 
HETATM 35 O O18 HZ7 . . . G 2 110.056 161.204 184.382 1 143.27 ? O18 HZ7 801 C 1 
HETATM 36 O O19 HZ7 . . . G 2 112.606 158.926 186.31 1 143.27 ? O19 HZ7 801 C 1 
HETATM 37 O O2 HZ7 . . . G 2 119.858 161.847 178.793 1 143.27 ? O2 HZ7 801 C 1 
HETATM 38 O O3 HZ7 . . . G 2 116.198 161.852 181.978 1 143.27 ? O3 HZ7 801 C 1 
HETATM 39 O O4 HZ7 . . . G 2 116.181 160.332 178.42 1 143.27 ? O4 HZ7 801 C 1 
HETATM 40 O O5 HZ7 . . . G 2 119.26 158.692 179.272 1 143.27 ? O5 HZ7 801 C 1 
HETATM 41 O O6 HZ7 . . . G 2 117.247 158.669 181.465 1 143.27 ? O6 HZ7 801 C 1 
HETATM 42 O O7 HZ7 . . . G 2 114.89 162.428 179.874 1 143.27 ? O7 HZ7 801 C 1 
HETATM 43 O O8 HZ7 . . . G 2 113.76 160.9 181.595 1 143.27 ? O8 HZ7 801 C 1 
HETATM 44 O O9 HZ7 . . . G 2 114.142 163.35 182.013 1 143.27 ? O9 HZ7 801 C 1 
HETATM 45 P P1 HZ7 . . . G 2 114.745 162.143 181.344 1 143.27 ? P1 HZ7 801 C 1 
HETATM 46 P P2 HZ7 . . . G 2 121.009 161.275 177.815 1 143.27 ? P2 HZ7 801 C 1 
HETATM 47 P P3 HZ7 . . . G 2 114.837 159.673 177.833 1 143.27 ? P3 HZ7 801 C 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           47 
#