data_6E7Z # _model_server_result.job_id Fm_U7Nuu_ee35pdKEliL8A _model_server_result.datetime_utc '2024-11-18 02:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 6E7Z # _exptl.entry_id 6E7Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 750.598 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 166 1_555 A SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 253 A CYS 253 1_555 A SG CYS 284 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 166 B CYS 166 1_555 B SG CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 253 B CYS 253 1_555 B SG CYS 284 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 166 C CYS 166 1_555 C SG CYS 192 C CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 253 C CYS 253 1_555 C SG CYS 284 C CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 D SG CYS 166 D CYS 166 1_555 D SG CYS 192 D CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 D SG CYS 253 D CYS 253 1_555 D SG CYS 284 D CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C25 H53 O19 P3' _chem_comp.formula_weight 750.598 _chem_comp.id HZ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6E7Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HZ7 A 1 801 801 HZ7 PIP . F 3 AQV A 1 802 900 AQV MOL . G 2 HZ7 B 1 801 801 HZ7 PIP . H 3 AQV B 1 802 900 AQV MOL . I 2 HZ7 C 1 801 801 HZ7 PIP . J 3 AQV C 1 802 900 AQV MOL . K 2 HZ7 D 1 801 801 HZ7 PIP . L 3 AQV D 1 802 900 AQV MOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 HZ7 . . . G 2 163.225 118.462 178.713 1 137.73 ? C2 HZ7 801 B 1 HETATM 2 C C3 HZ7 . . . G 2 163.374 117.04 179.243 1 137.73 ? C3 HZ7 801 B 1 HETATM 3 C C4 HZ7 . . . G 2 162.264 116.789 180.244 1 137.73 ? C4 HZ7 801 B 1 HETATM 4 C C5 HZ7 . . . G 2 162.684 117.596 181.458 1 137.73 ? C5 HZ7 801 B 1 HETATM 5 C C6 HZ7 . . . G 2 162.476 119.063 181.114 1 137.73 ? C6 HZ7 801 B 1 HETATM 6 C C1 HZ7 . . . G 2 163.288 119.47 179.87 1 137.73 ? C1 HZ7 801 B 1 HETATM 7 C C10 HZ7 . . . G 2 160.803 110.956 183.473 1 137.73 ? C10 HZ7 801 B 1 HETATM 8 C C11 HZ7 . . . G 2 159.718 111.869 182.911 1 137.73 ? C11 HZ7 801 B 1 HETATM 9 C C12 HZ7 . . . G 2 163.832 109.878 180.24 1 137.73 ? C12 HZ7 801 B 1 HETATM 10 C C13 HZ7 . . . G 2 163.092 108.649 179.729 1 137.73 ? C13 HZ7 801 B 1 HETATM 11 C C14 HZ7 . . . G 2 158.549 110.999 182.456 1 137.73 ? C14 HZ7 801 B 1 HETATM 12 C C15 HZ7 . . . G 2 157.188 111.658 182.653 1 137.73 ? C15 HZ7 801 B 1 HETATM 13 C C16 HZ7 . . . G 2 156.811 111.865 184.119 1 137.73 ? C16 HZ7 801 B 1 HETATM 14 C C17 HZ7 . . . G 2 156.926 110.594 184.954 1 137.73 ? C17 HZ7 801 B 1 HETATM 15 C C18 HZ7 . . . G 2 155.889 109.541 184.591 1 137.73 ? C18 HZ7 801 B 1 HETATM 16 C C19 HZ7 . . . G 2 156.239 108.229 185.259 1 137.73 ? C19 HZ7 801 B 1 HETATM 17 C C20 HZ7 . . . G 2 163.739 108.1 178.463 1 137.73 ? C20 HZ7 801 B 1 HETATM 18 C C21 HZ7 . . . G 2 162.759 108.167 177.299 1 137.73 ? C21 HZ7 801 B 1 HETATM 19 C C22 HZ7 . . . G 2 162.576 106.808 176.636 1 137.73 ? C22 HZ7 801 B 1 HETATM 20 C C23 HZ7 . . . G 2 163.521 106.631 175.456 1 137.73 ? C23 HZ7 801 B 1 HETATM 21 C C24 HZ7 . . . G 2 163.372 105.243 174.848 1 137.73 ? C24 HZ7 801 B 1 HETATM 22 C C25 HZ7 . . . G 2 164.302 105.051 173.671 1 137.73 ? C25 HZ7 801 B 1 HETATM 23 C C7 HZ7 . . . G 2 163.318 113.592 183.327 1 137.73 ? C7 HZ7 801 B 1 HETATM 24 C C8 HZ7 . . . G 2 162.598 112.429 182.663 1 137.73 ? C8 HZ7 801 B 1 HETATM 25 C C9 HZ7 . . . G 2 163.617 111.661 181.821 1 137.73 ? C9 HZ7 801 B 1 HETATM 26 O O1 HZ7 . . . G 2 161.077 119.26 180.91 1 137.73 ? O1 HZ7 801 B 1 HETATM 27 O O10 HZ7 . . . G 2 160.526 120.31 178.679 1 137.73 ? O10 HZ7 801 B 1 HETATM 28 O O11 HZ7 . . . G 2 161.298 122.605 178.848 1 137.73 ? O11 HZ7 801 B 1 HETATM 29 O O12 HZ7 . . . G 2 162.2 121.187 177.052 1 137.73 ? O12 HZ7 801 B 1 HETATM 30 O O13 HZ7 . . . G 2 164.305 114.284 179.748 1 137.73 ? O13 HZ7 801 B 1 HETATM 31 O O14 HZ7 . . . G 2 164.085 113.825 177.328 1 137.73 ? O14 HZ7 801 B 1 HETATM 32 O O15 HZ7 . . . G 2 165.776 115.462 178.162 1 137.73 ? O15 HZ7 801 B 1 HETATM 33 O O16 HZ7 . . . G 2 162.956 110.652 181.053 1 137.73 ? O16 HZ7 801 B 1 HETATM 34 O O17 HZ7 . . . G 2 162.048 111.633 183.717 1 137.73 ? O17 HZ7 801 B 1 HETATM 35 O O18 HZ7 . . . G 2 160.993 109.859 182.569 1 137.73 ? O18 HZ7 801 B 1 HETATM 36 O O19 HZ7 . . . G 2 164.251 110.663 179.123 1 137.73 ? O19 HZ7 801 B 1 HETATM 37 O O2 HZ7 . . . G 2 162.937 120.796 179.457 1 137.73 ? O2 HZ7 801 B 1 HETATM 38 O O3 HZ7 . . . G 2 161.948 117.221 182.617 1 137.73 ? O3 HZ7 801 B 1 HETATM 39 O O4 HZ7 . . . G 2 163.344 116.063 178.223 1 137.73 ? O4 HZ7 801 B 1 HETATM 40 O O5 HZ7 . . . G 2 164.269 118.73 177.773 1 137.73 ? O5 HZ7 801 B 1 HETATM 41 O O6 HZ7 . . . G 2 162.137 115.397 180.55 1 137.73 ? O6 HZ7 801 B 1 HETATM 42 O O7 HZ7 . . . G 2 163.862 116.673 184.196 1 137.73 ? O7 HZ7 801 B 1 HETATM 43 O O8 HZ7 . . . G 2 162.831 114.796 182.756 1 137.73 ? O8 HZ7 801 B 1 HETATM 44 O O9 HZ7 . . . G 2 161.571 115.842 184.706 1 137.73 ? O9 HZ7 801 B 1 HETATM 45 P P1 HZ7 . . . G 2 162.572 116.129 183.62 1 137.73 ? P1 HZ7 801 B 1 HETATM 46 P P2 HZ7 . . . G 2 161.722 121.208 178.482 1 137.73 ? P2 HZ7 801 B 1 HETATM 47 P P3 HZ7 . . . G 2 164.405 114.872 178.361 1 137.73 ? P3 HZ7 801 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #