data_6E82 # _model_server_result.job_id AmnZME-vH3BOW9UOqNJOgg _model_server_result.datetime_utc '2025-06-28 00:48:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 6E82 # _exptl.entry_id 6E82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E82 _cell.length_a 130.723 _cell.length_b 130.723 _cell.length_c 40.674 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_556 -x+2/3,-x+y+1/3,-z+4/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 65.3615 37.73648 54.232 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 G 15 A G 15 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc2 A O6 G 16 A G 16 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc3 A O6 G 22 A G 22 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc4 A O6 G 25 A G 25 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc5 A O6 G 26 A G 26 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 34 A G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 A G 4 1_555 A N3 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 A G 4 1_555 A O2 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 A G 4 1_555 A N4 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog13 A O2 C 5 A C 5 1_555 A N1 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog14 A N1 G 9 A G 9 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog15 A N2 G 9 A G 9 1_555 A O2 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog16 A N2 G 9 A G 9 1_555 A O2 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 G 12 A G 12 1_555 A O6 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 G 12 A G 12 1_555 A N7 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog19 A N7 G 12 A G 12 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog20 A O4 U 14 A U 14 1_555 A N2 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A N1 G 15 A G 15 1_555 A O6 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N2 G 15 A G 15 1_555 A N7 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N1 G 16 A G 16 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 A N2 G 16 A G 16 1_555 A N7 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog25 A N1 G 20 A G 20 1_555 A N3 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog26 A N6 A 21 A A 21 1_555 A O4 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 A N1 G 22 A G 22 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 A N2 G 22 A G 22 1_555 A N7 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 A N1 G 23 A G 23 1_555 A O6 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 A N2 G 23 A G 23 1_555 A N7 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C17 H19 N2 S 1' _chem_comp.formula_weight 283.411 _chem_comp.id TFX _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Thioflavin T' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 TFX doub 116 n y N1 C9 TFX sing 117 n y N1 C17 TFX sing 118 n n S1 C8 TFX sing 119 n y S1 C10 TFX sing 120 n y C2 N2 TFX sing 121 n n C2 C3 TFX doub 122 n y C2 C7 TFX sing 123 n y N2 C15 TFX sing 124 n n N2 C16 TFX sing 125 n n C3 C4 TFX sing 126 n y C4 C5 TFX doub 127 n y C5 C6 TFX sing 128 n y C5 C8 TFX sing 129 n y C6 C7 TFX doub 130 n y C9 C10 TFX doub 131 n y C9 C14 TFX sing 132 n y C10 C11 TFX sing 133 n y C11 C12 TFX doub 134 n y C12 C13 TFX sing 135 n y C12 C18 TFX sing 136 n n C13 C14 TFX doub 137 n y C3 H3 TFX sing 138 n n C4 H4 TFX sing 139 n n C6 H6 TFX sing 140 n n C7 H7 TFX sing 141 n n C11 H11 TFX sing 142 n n C13 H13 TFX sing 143 n n C14 H14 TFX sing 144 n n C15 H15 TFX sing 145 n n C15 H15A TFX sing 146 n n C15 H15B TFX sing 147 n n C16 H16 TFX sing 148 n n C16 H16A TFX sing 149 n n C16 H16B TFX sing 150 n n C17 H17 TFX sing 151 n n C17 H17A TFX sing 152 n n C17 H17B TFX sing 153 n n C18 H18 TFX sing 154 n n C18 H18A TFX sing 155 n n C18 H18B TFX sing 156 n n # _atom_sites.entry_id 6E82 _atom_sites.fract_transf_matrix[1][1] 0.00765 _atom_sites.fract_transf_matrix[1][2] 0.004417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 101 2 K K . C 3 TFX A 1 102 1 TFX TFX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TFX . A . C 3 17.666 50.821 24.298 0.25 68.35 ? N1 TFX 102 A 1 HETATM 2 N N1 TFX . B . C 3 10.279 52.533 29.611 0.25 74.55 ? N1 TFX 102 A 1 HETATM 3 S S1 TFX . A . C 3 15.639 51.193 25.516 0.25 70.11 ? S1 TFX 102 A 1 HETATM 4 S S1 TFX . B . C 3 12.238 52.037 28.326 0.25 72.6 ? S1 TFX 102 A 1 HETATM 5 C C2 TFX . A . C 3 15.691 46.928 27.569 0.25 66.29 ? C2 TFX 102 A 1 HETATM 6 C C2 TFX . B . C 3 12.213 56.375 26.31 0.25 78.37 ? C2 TFX 102 A 1 HETATM 7 N N2 TFX . A . C 3 15.317 45.805 28.405 0.25 65.63 ? N2 TFX 102 A 1 HETATM 8 N N2 TFX . B . C 3 12.534 57.544 25.508 0.25 79.79 ? N2 TFX 102 A 1 HETATM 9 C C3 TFX . A . C 3 14.805 47.97 27.398 0.25 68.01 ? C3 TFX 102 A 1 HETATM 10 C C3 TFX . B . C 3 13.02 55.246 26.286 0.25 76.15 ? C3 TFX 102 A 1 HETATM 11 C C4 TFX . A . C 3 15.144 49.053 26.612 0.25 68.74 ? C4 TFX 102 A 1 HETATM 12 C C4 TFX . B . C 3 12.693 54.142 27.063 0.25 74.88 ? C4 TFX 102 A 1 HETATM 13 C C5 TFX . A . C 3 16.38 49.108 25.984 0.25 67.7 ? C5 TFX 102 A 1 HETATM 14 C C5 TFX . B . C 3 11.557 54.16 27.868 0.25 75.78 ? C5 TFX 102 A 1 HETATM 15 C C6 TFX . A . C 3 17.267 48.061 26.174 0.25 65.94 ? C6 TFX 102 A 1 HETATM 16 C C6 TFX . B . C 3 10.758 55.291 27.878 0.25 78 ? C6 TFX 102 A 1 HETATM 17 C C7 TFX . A . C 3 16.928 46.973 26.959 0.25 65.27 ? C7 TFX 102 A 1 HETATM 18 C C7 TFX . B . C 3 11.081 56.394 27.107 0.25 79.3 ? C7 TFX 102 A 1 HETATM 19 C C8 TFX . A . C 3 16.764 50.197 25.19 0.25 68.42 ? C8 TFX 102 A 1 HETATM 20 C C8 TFX . B . C 3 11.168 53.086 28.669 0.25 74.62 ? C8 TFX 102 A 1 HETATM 21 C C9 TFX . A . C 3 17.134 52.274 23.995 0.25 70.08 ? C9 TFX 102 A 1 HETATM 22 C C9 TFX . B . C 3 10.747 51.06 29.933 0.25 72.65 ? C9 TFX 102 A 1 HETATM 23 C C10 TFX . A . C 3 15.935 52.474 24.732 0.25 71.12 ? C10 TFX 102 A 1 HETATM 24 C C10 TFX . B . C 3 11.91 50.786 29.161 0.25 71.59 ? C10 TFX 102 A 1 HETATM 25 C C11 TFX . A . C 3 15.257 53.68 24.649 0.25 72.99 ? C11 TFX 102 A 1 HETATM 26 C C11 TFX . B . C 3 12.518 49.543 29.271 0.25 70.03 ? C11 TFX 102 A 1 HETATM 27 C C12 TFX . A . C 3 15.757 54.696 23.836 0.25 73.98 ? C12 TFX 102 A 1 HETATM 28 C C12 TFX . B . C 3 11.986 48.572 30.124 0.25 69.52 ? C12 TFX 102 A 1 HETATM 29 C C13 TFX . A . C 3 16.942 54.5 23.103 0.25 72.86 ? C13 TFX 102 A 1 HETATM 30 C C13 TFX . B . C 3 10.841 48.846 30.884 0.25 70.51 ? C13 TFX 102 A 1 HETATM 31 C C14 TFX . A . C 3 17.623 53.283 23.186 0.25 70.77 ? C14 TFX 102 A 1 HETATM 32 C C14 TFX . B . C 3 10.227 50.094 30.779 0.25 72.07 ? C14 TFX 102 A 1 HETATM 33 C C15 TFX . A . C 3 16.219 44.689 28.599 0.25 63.98 ? C15 TFX 102 A 1 HETATM 34 C C15 TFX . B . C 3 13.907 57.817 25.133 0.25 78.52 ? C15 TFX 102 A 1 HETATM 35 C C16 TFX . A . C 3 14.038 45.803 29.09 0.25 66.66 ? C16 TFX 102 A 1 HETATM 36 C C16 TFX . B . C 3 11.482 58.453 25.086 0.25 82.55 ? C16 TFX 102 A 1 HETATM 37 C C17 TFX . A . C 3 18.866 50.242 23.727 0.25 67.04 ? C17 TFX 102 A 1 HETATM 38 C C17 TFX . B . C 3 9.128 53.194 30.197 0.25 76.31 ? C17 TFX 102 A 1 HETATM 39 C C18 TFX . A . C 3 15.003 56.022 23.749 0.25 76.34 ? C18 TFX 102 A 1 HETATM 40 C C18 TFX . B . C 3 12.657 47.207 30.237 0.25 67.93 ? C18 TFX 102 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #