data_6E84 # _model_server_result.job_id maIpM-WSKy4Tn0_reQScsw _model_server_result.datetime_utc '2024-11-19 09:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 6E84 # _exptl.entry_id 6E84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-4-[(Z)-(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]quinolin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E84 _cell.length_a 128.611 _cell.length_b 128.611 _cell.length_c 40.843 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 G 12 A G 12 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc2 A O6 G 13 A G 13 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 A O6 G 15 A G 15 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc4 A O6 G 16 A G 16 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc5 A O6 G 22 A G 22 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 A O6 G 23 A G 23 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? metalc ? metalc7 A O6 G 25 A G 25 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc8 A O6 G 26 A G 26 1_555 B K K . A K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 36 A C 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog4 A N2 G 2 A G 2 1_555 A O2 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 G 4 A G 4 1_555 A N3 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 G 4 A G 4 1_555 A O2 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 G 4 A G 4 1_555 A N4 C 33 A C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 C 5 A C 5 1_555 A N1 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 C 5 A C 5 1_555 A O6 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 C 5 A C 5 1_555 A N2 G 32 A G 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog11 A N7 G 6 A G 6 1_555 A N6 A 14 A A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog12 A N6 A 7 A A 7 1_555 A N7 A 14 A A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 G 9 A G 9 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 G 9 A G 9 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 G 9 A G 9 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N1 G 12 A G 12 1_555 A O6 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N2 G 12 A G 12 1_555 A N7 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N7 G 12 A G 12 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A O6 G 12 A G 12 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N1 G 13 A G 13 1_555 A O6 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 A N2 G 13 A G 13 1_555 A N7 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 A N1 G 13 A G 13 1_555 A O6 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 A N2 G 13 A G 13 1_555 A N7 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 A N7 G 13 A G 13 1_555 A N2 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 A O6 G 13 A G 13 1_555 A N1 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 A N1 G 15 A G 15 1_555 A O6 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 A N2 G 15 A G 15 1_555 A N7 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 A N1 G 16 A G 16 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 A N2 G 16 A G 16 1_555 A N7 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog30 A O2 C 18 A C 18 1_555 A N2 G 20 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog31 A N2 G 20 A G 20 1_555 A O2 C 28 A C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog32 A N6 A 21 A A 21 1_555 A O4 U 27 A U 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog33 A N1 G 22 A G 22 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog34 A N2 G 22 A G 22 1_555 A N7 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog35 A N1 G 23 A G 23 1_555 A O6 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog36 A N2 G 23 A G 23 1_555 A N7 G 26 A G 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C19 H17 N2 S 1' _chem_comp.formula_weight 305.417 _chem_comp.id J0D _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-4-[(Z)-(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]quinolin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Thiazole orange' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 N15 J0D sing 116 n n C14 N15 J0D doub 117 n y C14 C13 J0D sing 118 n y N15 C16 J0D sing 119 n y C13 C12 J0D doub 120 n y S09 C08 J0D sing 121 n n S09 C10 J0D sing 122 n n C07 C08 J0D doub 123 n y C07 C06 J0D sing 124 n y C16 C17 J0D doub 125 n y C16 C21 J0D sing 126 n y C08 C03 J0D sing 127 n y C12 C21 J0D sing 128 n y C12 C11 J0D sing 129 n n C17 C18 J0D sing 130 n y C06 C05 J0D doub 131 n y C21 C20 J0D doub 132 n y C10 C11 J0D doub 133 z n C10 N02 J0D sing 134 n n C03 N02 J0D sing 135 n n C03 C04 J0D doub 136 n y C18 C19 J0D doub 137 n y C05 C04 J0D sing 138 n y N02 C01 J0D sing 139 n n C20 C19 J0D sing 140 n y C01 H1 J0D sing 141 n n C01 H2 J0D sing 142 n n C01 H3 J0D sing 143 n n C04 H4 J0D sing 144 n n C05 H5 J0D sing 145 n n C06 H6 J0D sing 146 n n C07 H7 J0D sing 147 n n C11 H8 J0D sing 148 n n C13 H10 J0D sing 149 n n C14 H11 J0D sing 150 n n C17 H12 J0D sing 151 n n C18 H13 J0D sing 152 n n C19 H14 J0D sing 153 n n C20 H15 J0D sing 154 n n C22 H16 J0D sing 155 n n C22 H17 J0D sing 156 n n C22 H18 J0D sing 157 n n # _atom_sites.entry_id 6E84 _atom_sites.fract_transf_matrix[1][1] 0.007775 _atom_sites.fract_transf_matrix[1][2] 0.004489 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 101 1 K K . C 3 J0D A 1 102 1 J0D MBQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 J0D . . . C 3 13.517 20.603 0.555 0.5 87.07 ? C01 J0D 102 A 1 HETATM 2 C C03 J0D . . . C 3 11.373 20.309 -0.586 0.5 81.03 ? C03 J0D 102 A 1 HETATM 3 C C04 J0D . . . C 3 11.121 19.079 0.041 0.5 87.68 ? C04 J0D 102 A 1 HETATM 4 C C05 J0D . . . C 3 9.952 18.391 -0.251 0.5 104.68 ? C05 J0D 102 A 1 HETATM 5 C C06 J0D . . . C 3 9.016 18.907 -1.168 0.5 106.52 ? C06 J0D 102 A 1 HETATM 6 C C07 J0D . . . C 3 9.275 20.142 -1.79 0.5 99.04 ? C07 J0D 102 A 1 HETATM 7 C C08 J0D . . . C 3 10.455 20.838 -1.494 0.5 88.05 ? C08 J0D 102 A 1 HETATM 8 C C10 J0D . . . C 3 12.618 22.234 -1.034 0.5 92.09 ? C10 J0D 102 A 1 HETATM 9 C C11 J0D . . . C 3 13.668 23.088 -0.931 0.5 80.89 ? C11 J0D 102 A 1 HETATM 10 C C12 J0D . . . C 3 13.733 24.593 -1.288 0.5 58.61 ? C12 J0D 102 A 1 HETATM 11 C C13 J0D . . . C 3 12.864 25.095 -2.235 0.5 49.21 ? C13 J0D 102 A 1 HETATM 12 C C14 J0D . . . C 3 12.881 26.43 -2.6 0.5 49.69 ? C14 J0D 102 A 1 HETATM 13 C C16 J0D . . . C 3 14.616 26.829 -1.106 0.5 53.49 ? C16 J0D 102 A 1 HETATM 14 C C17 J0D . . . C 3 15.504 27.809 -0.552 0.5 49.9 ? C17 J0D 102 A 1 HETATM 15 C C18 J0D . . . C 3 16.429 27.451 0.409 0.5 47.85 ? C18 J0D 102 A 1 HETATM 16 C C19 J0D . . . C 3 16.487 26.125 0.835 0.5 49.88 ? C19 J0D 102 A 1 HETATM 17 C C20 J0D . . . C 3 15.62 25.17 0.306 0.5 57.76 ? C20 J0D 102 A 1 HETATM 18 C C21 J0D . . . C 3 14.664 25.523 -0.696 0.5 59.91 ? C21 J0D 102 A 1 HETATM 19 C C22 J0D . . . C 3 13.71 28.641 -2.454 0.5 58.93 ? C22 J0D 102 A 1 HETATM 20 N N02 J0D . . . C 3 12.516 21.08 -0.373 0.5 86.42 ? N02 J0D 102 A 1 HETATM 21 N N15 J0D . . . C 3 13.733 27.253 -2.042 0.5 51.29 ? N15 J0D 102 A 1 HETATM 22 S S09 J0D . . . C 3 11.202 22.318 -1.979 0.5 92.52 ? S09 J0D 102 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #