data_6E88
#
_model_server_result.job_id            fH4P4UoSByR5dOwKrzZXnw 
_model_server_result.datetime_utc      '2024-10-11 02:26:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":501}' 
#
_entry.id    6E88 
#
_exptl.entry_id    6E88 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E88 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6E88 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 GTP A 1 501 1 GTP GTP . 
N 4 GDP B 1 501 1 GDP GDP . 
O 3 GTP C 1 501 1 GTP GTP . 
P 4 GDP D 1 501 1 GDP GDP . 
Q 3 GTP H 1 501 1 GTP GTP . 
R 4 GDP J 1 501 1 GDP GDP . 
S 3 GTP L 1 501 1 GTP GTP . 
T 4 GDP N 1 501 1 GDP GDP . 
U 3 GTP I 1 501 1 GTP GTP . 
V 4 GDP K 1 501 1 GDP GDP . 
W 3 GTP M 1 501 1 GTP GTP . 
X 4 GDP O 1 501 1 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . W 3 184.374 64.754 215.257 1 40.73 ? PG GTP 501 M 1 
HETATM 2 O O1G GTP . . . W 3 183.052 64.068 215.464 1 40.73 ? O1G GTP 501 M 1 
HETATM 3 O O2G GTP . . . W 3 184.399 66.109 215.926 1 40.73 ? O2G GTP 501 M 1 
HETATM 4 O O3G GTP . . . W 3 185.441 63.865 215.85 1 40.73 ? O3G GTP 501 M 1 
HETATM 5 O O3B GTP . . . W 3 184.616 64.87 213.673 1 40.73 ? O3B GTP 501 M 1 
HETATM 6 P PB GTP . . . W 3 185.429 66.089 213.016 1 40.73 ? PB GTP 501 M 1 
HETATM 7 O O1B GTP . . . W 3 185.395 65.964 211.513 1 40.73 ? O1B GTP 501 M 1 
HETATM 8 O O2B GTP . . . W 3 184.858 67.416 213.446 1 40.73 ? O2B GTP 501 M 1 
HETATM 9 O O3A GTP . . . W 3 186.911 65.892 213.599 1 40.73 ? O3A GTP 501 M 1 
HETATM 10 P PA GTP . . . W 3 188.127 66.52 212.767 1 40.73 ? PA GTP 501 M 1 
HETATM 11 O O1A GTP . . . W 3 187.63 67.755 212.066 1 40.73 ? O1A GTP 501 M 1 
HETATM 12 O O2A GTP . . . W 3 189.259 66.851 213.705 1 40.73 ? O2A GTP 501 M 1 
HETATM 13 O O5' GTP . . . W 3 188.609 65.397 211.722 1 40.73 ? O5' GTP 501 M 1 
HETATM 14 C C5' GTP . . . W 3 189.969 65.025 211.705 1 40.73 ? C5' GTP 501 M 1 
HETATM 15 C C4' GTP . . . W 3 190.702 65.65 210.527 1 40.73 ? C4' GTP 501 M 1 
HETATM 16 O O4' GTP . . . W 3 190.042 66.806 210.057 1 40.73 ? O4' GTP 501 M 1 
HETATM 17 C C3' GTP . . . W 3 192.094 66.115 210.914 1 40.73 ? C3' GTP 501 M 1 
HETATM 18 O O3' GTP . . . W 3 193.05 65.159 210.528 1 40.73 ? O3' GTP 501 M 1 
HETATM 19 C C2' GTP . . . W 3 192.306 67.399 210.142 1 40.73 ? C2' GTP 501 M 1 
HETATM 20 O O2' GTP . . . W 3 193.32 67.224 209.186 1 40.73 ? O2' GTP 501 M 1 
HETATM 21 C C1' GTP . . . W 3 190.984 67.672 209.451 1 40.73 ? C1' GTP 501 M 1 
HETATM 22 N N9 GTP . . . W 3 190.593 69.077 209.646 1 40.73 ? N9 GTP 501 M 1 
HETATM 23 C C8 GTP . . . W 3 189.556 69.518 210.416 1 40.73 ? C8 GTP 501 M 1 
HETATM 24 N N7 GTP . . . W 3 189.497 70.863 210.34 1 40.73 ? N7 GTP 501 M 1 
HETATM 25 C C5 GTP . . . W 3 190.475 71.286 209.516 1 40.73 ? C5 GTP 501 M 1 
HETATM 26 C C6 GTP . . . W 3 190.843 72.549 209.098 1 40.73 ? C6 GTP 501 M 1 
HETATM 27 O O6 GTP . . . W 3 190.224 73.531 209.498 1 40.73 ? O6 GTP 501 M 1 
HETATM 28 N N1 GTP . . . W 3 191.904 72.701 208.237 1 40.73 ? N1 GTP 501 M 1 
HETATM 29 C C2 GTP . . . W 3 192.586 71.591 207.798 1 40.73 ? C2 GTP 501 M 1 
HETATM 30 N N2 GTP . . . W 3 193.61 71.735 206.966 1 40.73 ? N2 GTP 501 M 1 
HETATM 31 N N3 GTP . . . W 3 192.215 70.331 208.219 1 40.73 ? N3 GTP 501 M 1 
HETATM 32 C C4 GTP . . . W 3 191.173 70.178 209.067 1 40.73 ? C4 GTP 501 M 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#