data_6E8N # _model_server_result.job_id wQe47uvutBrpakfXDW2kMg _model_server_result.datetime_utc '2024-11-22 23:46:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6E8N # _exptl.entry_id 6E8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E8N _cell.length_a 102.107 _cell.length_b 136.399 _cell.length_c 75.908 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 42 1_555 A SG CYS 136 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf2 A SG CYS 52 A CYS 88 1_555 A SG CYS 186 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 77 A CYS 113 1_555 A SG CYS 174 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 6 B CYS 42 1_555 B SG CYS 136 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 B SG CYS 52 B CYS 88 1_555 B SG CYS 186 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 77 B CYS 113 1_555 B SG CYS 174 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 6E8N _atom_sites.fract_transf_matrix[1][1] 0.009794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2PE A 1 501 501 2PE 2PE . D 2 2PE B 1 501 501 2PE 2PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . C 2 29.048 4.02 6.428 1 112.01 ? O1 2PE 501 A 1 HETATM 2 C C2 2PE . . . C 2 29.379 5.308 6.874 1 111.01 ? C2 2PE 501 A 1 HETATM 3 C C3 2PE . . . C 2 28.864 6.367 5.892 1 108.15 ? C3 2PE 501 A 1 HETATM 4 O O4 2PE . . . C 2 29.034 7.632 6.47 1 106.83 ? O4 2PE 501 A 1 HETATM 5 C C5 2PE . . . C 2 27.913 8.12 7.154 1 107.06 ? C5 2PE 501 A 1 HETATM 6 C C6 2PE . . . C 2 27.462 9.438 6.53 1 104.49 ? C6 2PE 501 A 1 HETATM 7 O O7 2PE . . . C 2 27.847 10.511 7.357 1 106.83 ? O7 2PE 501 A 1 HETATM 8 C C8 2PE . . . C 2 26.873 11.52 7.473 1 108.45 ? C8 2PE 501 A 1 HETATM 9 C C9 2PE . . . C 2 27.349 12.748 8.267 1 111.34 ? C9 2PE 501 A 1 HETATM 10 O O10 2PE . . . C 2 26.425 13.818 8.162 1 111.39 ? O10 2PE 501 A 1 HETATM 11 C C11 2PE . . . C 2 26.16 14.5 9.364 1 110.9 ? C11 2PE 501 A 1 HETATM 12 C C12 2PE . . . C 2 25.255 15.735 9.185 1 105.97 ? C12 2PE 501 A 1 HETATM 13 O O13 2PE . . . C 2 24.484 15.932 10.361 1 101.97 ? O13 2PE 501 A 1 HETATM 14 C C14 2PE . . . C 2 23.901 17.195 10.536 1 94.76 ? C14 2PE 501 A 1 HETATM 15 C C15 2PE . . . C 2 22.74 17.367 9.563 1 92.46 ? C15 2PE 501 A 1 HETATM 16 O O16 2PE . . . C 2 23.184 17.92 8.35 1 91.68 ? O16 2PE 501 A 1 HETATM 17 C C17 2PE . . . C 2 22.146 18.182 7.426 1 90.69 ? C17 2PE 501 A 1 HETATM 18 C C18 2PE . . . C 2 22.02 17.098 6.339 1 90.06 ? C18 2PE 501 A 1 HETATM 19 O O19 2PE . . . C 2 20.686 16.703 6.121 1 86.42 ? O19 2PE 501 A 1 HETATM 20 C C20 2PE . . . C 2 20.218 15.724 7.023 1 88.24 ? C20 2PE 501 A 1 HETATM 21 C C21 2PE . . . C 2 20.172 14.308 6.422 1 92.25 ? C21 2PE 501 A 1 HETATM 22 O O22 2PE . . . C 2 18.881 13.726 6.527 1 92.78 ? O22 2PE 501 A 1 HETATM 23 C C23 2PE . . . C 2 18.637 12.847 7.617 1 88.34 ? C23 2PE 501 A 1 HETATM 24 C C24 2PE . . . C 2 18.188 11.441 7.194 1 84.4 ? C24 2PE 501 A 1 HETATM 25 O O25 2PE . . . C 2 16.954 11.527 6.518 1 81.04 ? O25 2PE 501 A 1 HETATM 26 C C26 2PE . . . C 2 16.524 10.38 5.829 1 83.43 ? C26 2PE 501 A 1 HETATM 27 C C27 2PE . . . C 2 17.68 9.72 5.079 1 87.82 ? C27 2PE 501 A 1 HETATM 28 O O28 2PE . . . C 2 17.175 8.763 4.19 1 92.66 ? O28 2PE 501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #