data_6E8Q # _model_server_result.job_id t8AGw2xxyJ0jhzSk01MHUA _model_server_result.datetime_utc '2024-11-29 23:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6E8Q # _exptl.entry_id 6E8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.47 _cell.angle_gamma 90 _cell.entry_id 6E8Q _cell.length_a 77.35 _cell.length_b 66.56 _cell.length_c 80.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NBD X2N . A X2N 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 166 n n CHA C4D HEM doub 167 n n CHA HHA HEM sing 168 n n CHB C4A HEM sing 169 n n CHB C1B HEM doub 170 n n CHB HHB HEM sing 171 n n CHC C4B HEM sing 172 n n CHC C1C HEM doub 173 n n CHC HHC HEM sing 174 n n CHD C4C HEM doub 175 n n CHD C1D HEM sing 176 n n CHD HHD HEM sing 177 n n C1A C2A HEM doub 178 n y C1A NA HEM sing 179 n y C2A C3A HEM sing 180 n y C2A CAA HEM sing 181 n n C3A C4A HEM doub 182 n y C3A CMA HEM sing 183 n n C4A NA HEM sing 184 n y CMA HMA HEM sing 185 n n CMA HMAA HEM sing 186 n n CMA HMAB HEM sing 187 n n CAA CBA HEM sing 188 n n CAA HAA HEM sing 189 n n CAA HAAA HEM sing 190 n n CBA CGA HEM sing 191 n n CBA HBA HEM sing 192 n n CBA HBAA HEM sing 193 n n CGA O1A HEM doub 194 n n CGA O2A HEM sing 195 n n C1B C2B HEM sing 196 n n C1B NB HEM sing 197 n n C2B C3B HEM doub 198 n n C2B CMB HEM sing 199 n n C3B C4B HEM sing 200 n n C3B CAB HEM sing 201 n n C4B NB HEM doub 202 n n CMB HMB HEM sing 203 n n CMB HMBA HEM sing 204 n n CMB HMBB HEM sing 205 n n CAB CBB HEM doub 206 n n CAB HAB HEM sing 207 n n CBB HBB HEM sing 208 n n CBB HBBA HEM sing 209 n n C1C C2C HEM sing 210 n y C1C NC HEM sing 211 n y C2C C3C HEM doub 212 n y C2C CMC HEM sing 213 n n C3C C4C HEM sing 214 n y C3C CAC HEM sing 215 n n C4C NC HEM sing 216 n y CMC HMC HEM sing 217 n n CMC HMCA HEM sing 218 n n CMC HMCB HEM sing 219 n n CAC CBC HEM doub 220 n n CAC HAC HEM sing 221 n n CBC HBC HEM sing 222 n n CBC HBCA HEM sing 223 n n C1D C2D HEM sing 224 n n C1D ND HEM doub 225 n n C2D C3D HEM doub 226 n n C2D CMD HEM sing 227 n n C3D C4D HEM sing 228 n n C3D CAD HEM sing 229 n n C4D ND HEM sing 230 n n CMD HMD HEM sing 231 n n CMD HMDA HEM sing 232 n n CMD HMDB HEM sing 233 n n CAD CBD HEM sing 234 n n CAD HAD HEM sing 235 n n CAD HADA HEM sing 236 n n CBD CGD HEM sing 237 n n CBD HBD HEM sing 238 n n CBD HBDA HEM sing 239 n n CGD O1D HEM doub 240 n n CGD O2D HEM sing 241 n n O2A H2A HEM sing 242 n n O2D H2D HEM sing 243 n n FE NA HEM sing 244 n n FE NB HEM sing 245 n n FE NC HEM sing 246 n n FE ND HEM sing 247 n n # _atom_sites.entry_id 6E8Q _atom_sites.fract_transf_matrix[1][1] 0.012928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001925 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 X2N A 1 602 602 X2N X2N . D 4 1PE A 1 603 603 1PE 1PE . E 5 LMT A 1 604 1 LMT LMT . F 6 HOH A 1 701 135 HOH HOH . F 6 HOH A 2 702 162 HOH HOH . F 6 HOH A 3 703 96 HOH HOH . F 6 HOH A 4 704 129 HOH HOH . F 6 HOH A 5 705 62 HOH HOH . F 6 HOH A 6 706 164 HOH HOH . F 6 HOH A 7 707 22 HOH HOH . F 6 HOH A 8 708 175 HOH HOH . F 6 HOH A 9 709 64 HOH HOH . F 6 HOH A 10 710 121 HOH HOH . F 6 HOH A 11 711 143 HOH HOH . F 6 HOH A 12 712 11 HOH HOH . F 6 HOH A 13 713 46 HOH HOH . F 6 HOH A 14 714 15 HOH HOH . F 6 HOH A 15 715 30 HOH HOH . F 6 HOH A 16 716 99 HOH HOH . F 6 HOH A 17 717 57 HOH HOH . F 6 HOH A 18 718 5 HOH HOH . F 6 HOH A 19 719 111 HOH HOH . F 6 HOH A 20 720 176 HOH HOH . F 6 HOH A 21 721 29 HOH HOH . F 6 HOH A 22 722 6 HOH HOH . F 6 HOH A 23 723 177 HOH HOH . F 6 HOH A 24 724 127 HOH HOH . F 6 HOH A 25 725 26 HOH HOH . F 6 HOH A 26 726 172 HOH HOH . F 6 HOH A 27 727 140 HOH HOH . F 6 HOH A 28 728 14 HOH HOH . F 6 HOH A 29 729 51 HOH HOH . F 6 HOH A 30 730 174 HOH HOH . F 6 HOH A 31 731 66 HOH HOH . F 6 HOH A 32 732 3 HOH HOH . F 6 HOH A 33 733 13 HOH HOH . F 6 HOH A 34 734 28 HOH HOH . F 6 HOH A 35 735 38 HOH HOH . F 6 HOH A 36 736 8 HOH HOH . F 6 HOH A 37 737 2 HOH HOH . F 6 HOH A 38 738 156 HOH HOH . F 6 HOH A 39 739 85 HOH HOH . F 6 HOH A 40 740 165 HOH HOH . F 6 HOH A 41 741 31 HOH HOH . F 6 HOH A 42 742 137 HOH HOH . F 6 HOH A 43 743 35 HOH HOH . F 6 HOH A 44 744 18 HOH HOH . F 6 HOH A 45 745 7 HOH HOH . F 6 HOH A 46 746 163 HOH HOH . F 6 HOH A 47 747 70 HOH HOH . F 6 HOH A 48 748 12 HOH HOH . F 6 HOH A 49 749 132 HOH HOH . F 6 HOH A 50 750 37 HOH HOH . F 6 HOH A 51 751 113 HOH HOH . F 6 HOH A 52 752 134 HOH HOH . F 6 HOH A 53 753 178 HOH HOH . F 6 HOH A 54 754 68 HOH HOH . F 6 HOH A 55 755 97 HOH HOH . F 6 HOH A 56 756 32 HOH HOH . F 6 HOH A 57 757 80 HOH HOH . F 6 HOH A 58 758 110 HOH HOH . F 6 HOH A 59 759 76 HOH HOH . F 6 HOH A 60 760 61 HOH HOH . F 6 HOH A 61 761 171 HOH HOH . F 6 HOH A 62 762 155 HOH HOH . F 6 HOH A 63 763 71 HOH HOH . F 6 HOH A 64 764 47 HOH HOH . F 6 HOH A 65 765 59 HOH HOH . F 6 HOH A 66 766 63 HOH HOH . F 6 HOH A 67 767 45 HOH HOH . F 6 HOH A 68 768 161 HOH HOH . F 6 HOH A 69 769 94 HOH HOH . F 6 HOH A 70 770 158 HOH HOH . F 6 HOH A 71 771 89 HOH HOH . F 6 HOH A 72 772 146 HOH HOH . F 6 HOH A 73 773 42 HOH HOH . F 6 HOH A 74 774 27 HOH HOH . F 6 HOH A 75 775 48 HOH HOH . F 6 HOH A 76 776 79 HOH HOH . F 6 HOH A 77 777 69 HOH HOH . F 6 HOH A 78 778 101 HOH HOH . F 6 HOH A 79 779 41 HOH HOH . F 6 HOH A 80 780 108 HOH HOH . F 6 HOH A 81 781 49 HOH HOH . F 6 HOH A 82 782 88 HOH HOH . F 6 HOH A 83 783 72 HOH HOH . F 6 HOH A 84 784 93 HOH HOH . F 6 HOH A 85 785 23 HOH HOH . F 6 HOH A 86 786 67 HOH HOH . F 6 HOH A 87 787 43 HOH HOH . F 6 HOH A 88 788 159 HOH HOH . F 6 HOH A 89 789 81 HOH HOH . F 6 HOH A 90 790 34 HOH HOH . F 6 HOH A 91 791 56 HOH HOH . F 6 HOH A 92 792 117 HOH HOH . F 6 HOH A 93 793 160 HOH HOH . F 6 HOH A 94 794 25 HOH HOH . F 6 HOH A 95 795 169 HOH HOH . F 6 HOH A 96 796 130 HOH HOH . F 6 HOH A 97 797 170 HOH HOH . F 6 HOH A 98 798 179 HOH HOH . F 6 HOH A 99 799 148 HOH HOH . F 6 HOH A 100 800 92 HOH HOH . F 6 HOH A 101 801 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 26.8 8.652 18.399 1 25.53 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 26.15 11.635 22.221 1 20.78 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 28.723 15.02 19.93 1 24.34 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 29.208 12.163 16.014 1 22.88 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 26.383 9.145 19.626 1 28.36 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 25.573 8.447 20.619 1 21.23 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 25.407 9.279 21.668 1 21.2 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 26.088 10.525 21.389 1 21.13 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 24.618 8.992 22.968 1 22.72 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 25.033 7.009 20.475 1 22.63 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 23.631 6.964 19.868 1 24.25 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 23.01 5.592 19.974 1 24.27 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 21.835 5.437 19.557 1 32.18 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 23.671 4.647 20.48 1 28.46 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 26.823 12.809 21.971 1 20.61 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 27 13.935 22.868 1 23.43 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 27.716 14.867 22.209 1 22.99 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 28.008 14.358 20.89 1 20.42 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 26.45 13.96 24.32 1 23.45 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 28.23 16.273 22.597 1 27.23 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 27.819 16.934 23.678 1 32.74 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 29.093 14.53 18.676 1 26.38 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 29.952 15.23 17.761 1 20.42 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 30.107 14.456 16.664 1 24.65 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 29.35 13.23 16.878 1 23.33 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 30.521 16.626 18.111 1 20.21 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 30.936 14.725 15.373 1 26.7 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 31.912 15.646 15.313 1 29.71 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 28.64 10.948 16.369 1 21.97 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 28.717 9.739 15.575 1 23.67 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 28.047 8.756 16.223 1 23.79 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 27.539 9.329 17.456 1 24.66 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 29.447 9.68 14.205 1 21.26 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 27.865 7.273 15.8 1 22.36 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 26.443 6.865 15.408 1 24.69 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 26.306 5.362 15.367 1 25.31 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 27.343 4.65 15.37 1 24.21 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 25.147 4.877 15.323 1 26 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 26.671 10.411 20.123 1 22.14 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 27.45 13.113 20.773 1 20.95 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 28.738 13.315 18.109 1 24.4 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 27.917 10.658 17.506 1 21.48 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 27.679 11.93 19.199 1 24 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #