data_6E8Q # _model_server_result.job_id liggpZ3VY5enNK_LpvPb8Q _model_server_result.datetime_utc '2024-11-26 13:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6E8Q # _exptl.entry_id 6E8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.47 _cell.angle_gamma 90 _cell.entry_id 6E8Q _cell.length_a 77.35 _cell.length_b 66.56 _cell.length_c 80.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NBD X2N . A X2N 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6E8Q _atom_sites.fract_transf_matrix[1][1] 0.012928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001925 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 X2N A 1 602 602 X2N X2N . D 4 1PE A 1 603 603 1PE 1PE . E 5 LMT A 1 604 1 LMT LMT . F 6 HOH A 1 701 135 HOH HOH . F 6 HOH A 2 702 162 HOH HOH . F 6 HOH A 3 703 96 HOH HOH . F 6 HOH A 4 704 129 HOH HOH . F 6 HOH A 5 705 62 HOH HOH . F 6 HOH A 6 706 164 HOH HOH . F 6 HOH A 7 707 22 HOH HOH . F 6 HOH A 8 708 175 HOH HOH . F 6 HOH A 9 709 64 HOH HOH . F 6 HOH A 10 710 121 HOH HOH . F 6 HOH A 11 711 143 HOH HOH . F 6 HOH A 12 712 11 HOH HOH . F 6 HOH A 13 713 46 HOH HOH . F 6 HOH A 14 714 15 HOH HOH . F 6 HOH A 15 715 30 HOH HOH . F 6 HOH A 16 716 99 HOH HOH . F 6 HOH A 17 717 57 HOH HOH . F 6 HOH A 18 718 5 HOH HOH . F 6 HOH A 19 719 111 HOH HOH . F 6 HOH A 20 720 176 HOH HOH . F 6 HOH A 21 721 29 HOH HOH . F 6 HOH A 22 722 6 HOH HOH . F 6 HOH A 23 723 177 HOH HOH . F 6 HOH A 24 724 127 HOH HOH . F 6 HOH A 25 725 26 HOH HOH . F 6 HOH A 26 726 172 HOH HOH . F 6 HOH A 27 727 140 HOH HOH . F 6 HOH A 28 728 14 HOH HOH . F 6 HOH A 29 729 51 HOH HOH . F 6 HOH A 30 730 174 HOH HOH . F 6 HOH A 31 731 66 HOH HOH . F 6 HOH A 32 732 3 HOH HOH . F 6 HOH A 33 733 13 HOH HOH . F 6 HOH A 34 734 28 HOH HOH . F 6 HOH A 35 735 38 HOH HOH . F 6 HOH A 36 736 8 HOH HOH . F 6 HOH A 37 737 2 HOH HOH . F 6 HOH A 38 738 156 HOH HOH . F 6 HOH A 39 739 85 HOH HOH . F 6 HOH A 40 740 165 HOH HOH . F 6 HOH A 41 741 31 HOH HOH . F 6 HOH A 42 742 137 HOH HOH . F 6 HOH A 43 743 35 HOH HOH . F 6 HOH A 44 744 18 HOH HOH . F 6 HOH A 45 745 7 HOH HOH . F 6 HOH A 46 746 163 HOH HOH . F 6 HOH A 47 747 70 HOH HOH . F 6 HOH A 48 748 12 HOH HOH . F 6 HOH A 49 749 132 HOH HOH . F 6 HOH A 50 750 37 HOH HOH . F 6 HOH A 51 751 113 HOH HOH . F 6 HOH A 52 752 134 HOH HOH . F 6 HOH A 53 753 178 HOH HOH . F 6 HOH A 54 754 68 HOH HOH . F 6 HOH A 55 755 97 HOH HOH . F 6 HOH A 56 756 32 HOH HOH . F 6 HOH A 57 757 80 HOH HOH . F 6 HOH A 58 758 110 HOH HOH . F 6 HOH A 59 759 76 HOH HOH . F 6 HOH A 60 760 61 HOH HOH . F 6 HOH A 61 761 171 HOH HOH . F 6 HOH A 62 762 155 HOH HOH . F 6 HOH A 63 763 71 HOH HOH . F 6 HOH A 64 764 47 HOH HOH . F 6 HOH A 65 765 59 HOH HOH . F 6 HOH A 66 766 63 HOH HOH . F 6 HOH A 67 767 45 HOH HOH . F 6 HOH A 68 768 161 HOH HOH . F 6 HOH A 69 769 94 HOH HOH . F 6 HOH A 70 770 158 HOH HOH . F 6 HOH A 71 771 89 HOH HOH . F 6 HOH A 72 772 146 HOH HOH . F 6 HOH A 73 773 42 HOH HOH . F 6 HOH A 74 774 27 HOH HOH . F 6 HOH A 75 775 48 HOH HOH . F 6 HOH A 76 776 79 HOH HOH . F 6 HOH A 77 777 69 HOH HOH . F 6 HOH A 78 778 101 HOH HOH . F 6 HOH A 79 779 41 HOH HOH . F 6 HOH A 80 780 108 HOH HOH . F 6 HOH A 81 781 49 HOH HOH . F 6 HOH A 82 782 88 HOH HOH . F 6 HOH A 83 783 72 HOH HOH . F 6 HOH A 84 784 93 HOH HOH . F 6 HOH A 85 785 23 HOH HOH . F 6 HOH A 86 786 67 HOH HOH . F 6 HOH A 87 787 43 HOH HOH . F 6 HOH A 88 788 159 HOH HOH . F 6 HOH A 89 789 81 HOH HOH . F 6 HOH A 90 790 34 HOH HOH . F 6 HOH A 91 791 56 HOH HOH . F 6 HOH A 92 792 117 HOH HOH . F 6 HOH A 93 793 160 HOH HOH . F 6 HOH A 94 794 25 HOH HOH . F 6 HOH A 95 795 169 HOH HOH . F 6 HOH A 96 796 130 HOH HOH . F 6 HOH A 97 797 170 HOH HOH . F 6 HOH A 98 798 179 HOH HOH . F 6 HOH A 99 799 148 HOH HOH . F 6 HOH A 100 800 92 HOH HOH . F 6 HOH A 101 801 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 4 29.174 28.39 -3.296 1 41.6 ? OH2 1PE 603 A 1 HETATM 2 C C12 1PE . . . D 4 29.369 27.539 -4.441 1 43.25 ? C12 1PE 603 A 1 HETATM 3 C C22 1PE . . . D 4 30.366 26.393 -4.227 1 37.03 ? C22 1PE 603 A 1 HETATM 4 O OH3 1PE . . . D 4 31.672 26.812 -3.806 1 42.88 ? OH3 1PE 603 A 1 HETATM 5 C C13 1PE . . . D 4 33.96 26.022 -3.199 1 33.17 ? C13 1PE 603 A 1 HETATM 6 C C23 1PE . . . D 4 32.643 25.752 -3.936 1 39.38 ? C23 1PE 603 A 1 HETATM 7 O OH4 1PE . . . D 4 34.331 27.412 -3.172 1 45.52 ? OH4 1PE 603 A 1 HETATM 8 C C14 1PE . . . D 4 35.763 29.133 -2.049 1 41.79 ? C14 1PE 603 A 1 HETATM 9 C C24 1PE . . . D 4 35.439 27.652 -2.272 1 39.16 ? C24 1PE 603 A 1 HETATM 10 O OH5 1PE . . . D 4 34.901 29.72 -1.061 1 47.92 ? OH5 1PE 603 A 1 HETATM 11 C C15 1PE . . . D 4 33.563 31.727 -0.695 1 49.35 ? C15 1PE 603 A 1 HETATM 12 C C25 1PE . . . D 4 34.95 31.15 -1.017 1 46.43 ? C25 1PE 603 A 1 HETATM 13 O OH6 1PE . . . D 4 32.615 31.506 -1.757 1 53.72 ? OH6 1PE 603 A 1 HETATM 14 C C16 1PE . . . D 4 30.361 31.819 -2.696 1 51.68 ? C16 1PE 603 A 1 HETATM 15 C C26 1PE . . . D 4 31.312 32.072 -1.518 1 47.43 ? C26 1PE 603 A 1 HETATM 16 O OH7 1PE . . . D 4 29.51 30.67 -2.486 1 50.9 ? OH7 1PE 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #