data_6E8Z # _model_server_result.job_id aOi6KOxWQ17SA6LNKhibvQ _model_server_result.datetime_utc '2024-11-25 23:29:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":403}' # _entry.id 6E8Z # _exptl.entry_id 6E8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.32 _cell.angle_gamma 90 _cell.entry_id 6E8Z _cell.length_a 63.58 _cell.length_b 78.78 _cell.length_c 69.179 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 26 A ALA 26 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc2 A O ALA 27 A ALA 27 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc3 A O LEU 29 A LEU 29 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 A O PHE 32 A PHE 32 1_555 H K K . A K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc5 B O ALA 26 B ALA 26 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc6 B O ALA 27 B ALA 27 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc7 B O LEU 29 B LEU 29 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc8 B O PHE 32 B PHE 32 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc9 L K K . B K 404 1_555 N O HOH . B HOH 507 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc10 L K K . B K 404 1_555 N O HOH . B HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc11 L K K . B K 404 1_555 N O HOH . B HOH 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.41 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6E8Z _atom_sites.fract_transf_matrix[1][1] 0.015728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 1 NAD NAD . D 3 PO4 A 1 402 1 PO4 PO4 . E 4 EDO A 1 403 1 EDO EDO . F 4 EDO A 1 404 4 EDO EDO . G 4 EDO A 1 405 5 EDO EDO . H 5 K A 1 406 1 K K . I 2 NAD B 1 401 2 NAD NAD . J 3 PO4 B 1 402 2 PO4 PO4 . K 4 EDO B 1 403 2 EDO EDO . L 5 K B 1 404 2 K K . M 6 HOH A 1 501 161 HOH HOH . M 6 HOH A 2 502 154 HOH HOH . M 6 HOH A 3 503 216 HOH HOH . M 6 HOH A 4 504 233 HOH HOH . M 6 HOH A 5 505 220 HOH HOH . M 6 HOH A 6 506 140 HOH HOH . M 6 HOH A 7 507 157 HOH HOH . M 6 HOH A 8 508 40 HOH HOH . M 6 HOH A 9 509 18 HOH HOH . M 6 HOH A 10 510 70 HOH HOH . M 6 HOH A 11 511 89 HOH HOH . M 6 HOH A 12 512 3 HOH HOH . M 6 HOH A 13 513 123 HOH HOH . M 6 HOH A 14 514 32 HOH HOH . M 6 HOH A 15 515 10 HOH HOH . M 6 HOH A 16 516 114 HOH HOH . M 6 HOH A 17 517 71 HOH HOH . M 6 HOH A 18 518 63 HOH HOH . M 6 HOH A 19 519 221 HOH HOH . M 6 HOH A 20 520 236 HOH HOH . M 6 HOH A 21 521 79 HOH HOH . M 6 HOH A 22 522 27 HOH HOH . M 6 HOH A 23 523 181 HOH HOH . M 6 HOH A 24 524 68 HOH HOH . M 6 HOH A 25 525 96 HOH HOH . M 6 HOH A 26 526 57 HOH HOH . M 6 HOH A 27 527 120 HOH HOH . M 6 HOH A 28 528 169 HOH HOH . M 6 HOH A 29 529 150 HOH HOH . M 6 HOH A 30 530 212 HOH HOH . M 6 HOH A 31 531 228 HOH HOH . M 6 HOH A 32 532 127 HOH HOH . M 6 HOH A 33 533 102 HOH HOH . M 6 HOH A 34 534 205 HOH HOH . M 6 HOH A 35 535 5 HOH HOH . M 6 HOH A 36 536 173 HOH HOH . M 6 HOH A 37 537 56 HOH HOH . M 6 HOH A 38 538 72 HOH HOH . M 6 HOH A 39 539 119 HOH HOH . M 6 HOH A 40 540 175 HOH HOH . M 6 HOH A 41 541 47 HOH HOH . M 6 HOH A 42 542 73 HOH HOH . M 6 HOH A 43 543 62 HOH HOH . M 6 HOH A 44 544 217 HOH HOH . M 6 HOH A 45 545 21 HOH HOH . M 6 HOH A 46 546 1 HOH HOH . M 6 HOH A 47 547 34 HOH HOH . M 6 HOH A 48 548 20 HOH HOH . M 6 HOH A 49 549 218 HOH HOH . M 6 HOH A 50 550 186 HOH HOH . M 6 HOH A 51 551 26 HOH HOH . M 6 HOH A 52 552 166 HOH HOH . M 6 HOH A 53 553 49 HOH HOH . M 6 HOH A 54 554 126 HOH HOH . M 6 HOH A 55 555 97 HOH HOH . M 6 HOH A 56 556 206 HOH HOH . M 6 HOH A 57 557 100 HOH HOH . M 6 HOH A 58 558 112 HOH HOH . M 6 HOH A 59 559 13 HOH HOH . M 6 HOH A 60 560 142 HOH HOH . M 6 HOH A 61 561 17 HOH HOH . M 6 HOH A 62 562 36 HOH HOH . M 6 HOH A 63 563 81 HOH HOH . M 6 HOH A 64 564 74 HOH HOH . M 6 HOH A 65 565 61 HOH HOH . M 6 HOH A 66 566 211 HOH HOH . M 6 HOH A 67 567 152 HOH HOH . M 6 HOH A 68 568 88 HOH HOH . M 6 HOH A 69 569 53 HOH HOH . M 6 HOH A 70 570 83 HOH HOH . M 6 HOH A 71 571 37 HOH HOH . M 6 HOH A 72 572 178 HOH HOH . M 6 HOH A 73 573 134 HOH HOH . M 6 HOH A 74 574 214 HOH HOH . M 6 HOH A 75 575 90 HOH HOH . M 6 HOH A 76 576 54 HOH HOH . M 6 HOH A 77 577 75 HOH HOH . M 6 HOH A 78 578 82 HOH HOH . M 6 HOH A 79 579 59 HOH HOH . M 6 HOH A 80 580 31 HOH HOH . M 6 HOH A 81 581 148 HOH HOH . M 6 HOH A 82 582 104 HOH HOH . M 6 HOH A 83 583 93 HOH HOH . M 6 HOH A 84 584 107 HOH HOH . M 6 HOH A 85 585 156 HOH HOH . M 6 HOH A 86 586 121 HOH HOH . M 6 HOH A 87 587 183 HOH HOH . M 6 HOH A 88 588 170 HOH HOH . M 6 HOH A 89 589 132 HOH HOH . M 6 HOH A 90 590 39 HOH HOH . M 6 HOH A 91 591 193 HOH HOH . M 6 HOH A 92 592 42 HOH HOH . M 6 HOH A 93 593 44 HOH HOH . M 6 HOH A 94 594 235 HOH HOH . M 6 HOH A 95 595 116 HOH HOH . M 6 HOH A 96 596 195 HOH HOH . M 6 HOH A 97 597 219 HOH HOH . M 6 HOH A 98 598 124 HOH HOH . M 6 HOH A 99 599 136 HOH HOH . M 6 HOH A 100 600 202 HOH HOH . M 6 HOH A 101 601 138 HOH HOH . M 6 HOH A 102 602 229 HOH HOH . M 6 HOH A 103 603 224 HOH HOH . M 6 HOH A 104 604 194 HOH HOH . M 6 HOH A 105 605 189 HOH HOH . M 6 HOH A 106 606 167 HOH HOH . M 6 HOH A 107 607 58 HOH HOH . M 6 HOH A 108 608 209 HOH HOH . M 6 HOH A 109 609 234 HOH HOH . N 6 HOH B 1 501 201 HOH HOH . N 6 HOH B 2 502 184 HOH HOH . N 6 HOH B 3 503 171 HOH HOH . N 6 HOH B 4 504 190 HOH HOH . N 6 HOH B 5 505 141 HOH HOH . N 6 HOH B 6 506 215 HOH HOH . N 6 HOH B 7 507 30 HOH HOH . N 6 HOH B 8 508 52 HOH HOH . N 6 HOH B 9 509 145 HOH HOH . N 6 HOH B 10 510 8 HOH HOH . N 6 HOH B 11 511 108 HOH HOH . N 6 HOH B 12 512 117 HOH HOH . N 6 HOH B 13 513 222 HOH HOH . N 6 HOH B 14 514 111 HOH HOH . N 6 HOH B 15 515 12 HOH HOH . N 6 HOH B 16 516 67 HOH HOH . N 6 HOH B 17 517 60 HOH HOH . N 6 HOH B 18 518 153 HOH HOH . N 6 HOH B 19 519 208 HOH HOH . N 6 HOH B 20 520 125 HOH HOH . N 6 HOH B 21 521 6 HOH HOH . N 6 HOH B 22 522 78 HOH HOH . N 6 HOH B 23 523 48 HOH HOH . N 6 HOH B 24 524 94 HOH HOH . N 6 HOH B 25 525 23 HOH HOH . N 6 HOH B 26 526 110 HOH HOH . N 6 HOH B 27 527 38 HOH HOH . N 6 HOH B 28 528 203 HOH HOH . N 6 HOH B 29 529 151 HOH HOH . N 6 HOH B 30 530 28 HOH HOH . N 6 HOH B 31 531 33 HOH HOH . N 6 HOH B 32 532 16 HOH HOH . N 6 HOH B 33 533 24 HOH HOH . N 6 HOH B 34 534 101 HOH HOH . N 6 HOH B 35 535 199 HOH HOH . N 6 HOH B 36 536 14 HOH HOH . N 6 HOH B 37 537 113 HOH HOH . N 6 HOH B 38 538 165 HOH HOH . N 6 HOH B 39 539 147 HOH HOH . N 6 HOH B 40 540 241 HOH HOH . N 6 HOH B 41 541 7 HOH HOH . N 6 HOH B 42 542 25 HOH HOH . N 6 HOH B 43 543 213 HOH HOH . N 6 HOH B 44 544 176 HOH HOH . N 6 HOH B 45 545 182 HOH HOH . N 6 HOH B 46 546 15 HOH HOH . N 6 HOH B 47 547 4 HOH HOH . N 6 HOH B 48 548 64 HOH HOH . N 6 HOH B 49 549 11 HOH HOH . N 6 HOH B 50 550 105 HOH HOH . N 6 HOH B 51 551 80 HOH HOH . N 6 HOH B 52 552 29 HOH HOH . N 6 HOH B 53 553 200 HOH HOH . N 6 HOH B 54 554 144 HOH HOH . N 6 HOH B 55 555 185 HOH HOH . N 6 HOH B 56 556 160 HOH HOH . N 6 HOH B 57 557 2 HOH HOH . N 6 HOH B 58 558 66 HOH HOH . N 6 HOH B 59 559 45 HOH HOH . N 6 HOH B 60 560 19 HOH HOH . N 6 HOH B 61 561 115 HOH HOH . N 6 HOH B 62 562 159 HOH HOH . N 6 HOH B 63 563 149 HOH HOH . N 6 HOH B 64 564 143 HOH HOH . N 6 HOH B 65 565 22 HOH HOH . N 6 HOH B 66 566 162 HOH HOH . N 6 HOH B 67 567 163 HOH HOH . N 6 HOH B 68 568 50 HOH HOH . N 6 HOH B 69 569 135 HOH HOH . N 6 HOH B 70 570 231 HOH HOH . N 6 HOH B 71 571 122 HOH HOH . N 6 HOH B 72 572 85 HOH HOH . N 6 HOH B 73 573 87 HOH HOH . N 6 HOH B 74 574 35 HOH HOH . N 6 HOH B 75 575 91 HOH HOH . N 6 HOH B 76 576 137 HOH HOH . N 6 HOH B 77 577 256 HOH HOH . N 6 HOH B 78 578 155 HOH HOH . N 6 HOH B 79 579 198 HOH HOH . N 6 HOH B 80 580 43 HOH HOH . N 6 HOH B 81 581 41 HOH HOH . N 6 HOH B 82 582 46 HOH HOH . N 6 HOH B 83 583 191 HOH HOH . N 6 HOH B 84 584 118 HOH HOH . N 6 HOH B 85 585 98 HOH HOH . N 6 HOH B 86 586 92 HOH HOH . N 6 HOH B 87 587 55 HOH HOH . N 6 HOH B 88 588 249 HOH HOH . N 6 HOH B 89 589 69 HOH HOH . N 6 HOH B 90 590 95 HOH HOH . N 6 HOH B 91 591 207 HOH HOH . N 6 HOH B 92 592 84 HOH HOH . N 6 HOH B 93 593 230 HOH HOH . N 6 HOH B 94 594 106 HOH HOH . N 6 HOH B 95 595 197 HOH HOH . N 6 HOH B 96 596 179 HOH HOH . N 6 HOH B 97 597 252 HOH HOH . N 6 HOH B 98 598 86 HOH HOH . N 6 HOH B 99 599 109 HOH HOH . N 6 HOH B 100 600 210 HOH HOH . N 6 HOH B 101 601 204 HOH HOH . N 6 HOH B 102 602 196 HOH HOH . N 6 HOH B 103 603 9 HOH HOH . N 6 HOH B 104 604 188 HOH HOH . N 6 HOH B 105 605 237 HOH HOH . N 6 HOH B 106 606 51 HOH HOH . N 6 HOH B 107 607 232 HOH HOH . N 6 HOH B 108 608 65 HOH HOH . N 6 HOH B 109 609 180 HOH HOH . N 6 HOH B 110 610 192 HOH HOH . N 6 HOH B 111 611 187 HOH HOH . N 6 HOH B 112 612 146 HOH HOH . N 6 HOH B 113 613 128 HOH HOH . N 6 HOH B 114 614 223 HOH HOH . N 6 HOH B 115 615 103 HOH HOH . N 6 HOH B 116 616 158 HOH HOH . N 6 HOH B 117 617 254 HOH HOH . N 6 HOH B 118 618 227 HOH HOH . N 6 HOH B 119 619 174 HOH HOH . N 6 HOH B 120 620 239 HOH HOH . N 6 HOH B 121 621 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 4 -3.851 -17.165 -53.364 1 32.62 ? C1 EDO 403 B 1 HETATM 2 O O1 EDO . . . K 4 -5.028 -17.818 -53.765 1 42 ? O1 EDO 403 B 1 HETATM 3 C C2 EDO . . . K 4 -3.515 -17.667 -51.952 1 35.95 ? C2 EDO 403 B 1 HETATM 4 O O2 EDO . . . K 4 -4.661 -17.557 -51.142 1 42.3 ? O2 EDO 403 B 1 HETATM 5 H H11 EDO . . . K 4 -3.128 -17.382 -53.973 1 39.1 ? H11 EDO 403 B 1 HETATM 6 H H12 EDO . . . K 4 -3.995 -16.206 -53.349 1 39.1 ? H12 EDO 403 B 1 HETATM 7 H HO1 EDO . . . K 4 -4.832 -18.575 -54.098 1 50.36 ? HO1 EDO 403 B 1 HETATM 8 H H21 EDO . . . K 4 -3.236 -18.595 -51.995 1 43.1 ? H21 EDO 403 B 1 HETATM 9 H H22 EDO . . . K 4 -2.8 -17.13 -51.578 1 43.1 ? H22 EDO 403 B 1 HETATM 10 H HO2 EDO . . . K 4 -4.75 -18.264 -50.679 1 50.72 ? HO2 EDO 403 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #