data_6E9N # _model_server_result.job_id WT3j_LbgZonB-zhLaK61Jw _model_server_result.datetime_utc '2025-02-05 12:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6E9N # _exptl.entry_id 6E9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.155 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'D-gluconic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.32 _cell.angle_gamma 90 _cell.entry_id 6E9N _cell.length_a 76.7 _cell.length_b 107.63 _cell.length_c 103.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O7' _chem_comp.formula_weight 196.155 _chem_comp.id GCO _chem_comp.mon_nstd_flag . _chem_comp.name 'D-gluconic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'GLUCONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GCO sing 134 n n C1 O1A GCO doub 135 n n C1 O1B GCO sing 136 n n C2 C3 GCO sing 137 n n C2 O2 GCO sing 138 n n C2 H2 GCO sing 139 n n C3 C4 GCO sing 140 n n C3 O3 GCO sing 141 n n C3 H3 GCO sing 142 n n C4 C5 GCO sing 143 n n C4 O4 GCO sing 144 n n C4 H4 GCO sing 145 n n C5 C6 GCO sing 146 n n C5 O5 GCO sing 147 n n C5 H5 GCO sing 148 n n C6 O6 GCO sing 149 n n C6 H61 GCO sing 150 n n C6 H62 GCO sing 151 n n O1B HO1B GCO sing 152 n n O2 HO2 GCO sing 153 n n O3 HO3 GCO sing 154 n n O4 HO4 GCO sing 155 n n O5 HO5 GCO sing 156 n n O6 HO6 GCO sing 157 n n # _atom_sites.entry_id 6E9N _atom_sites.fract_transf_matrix[1][1] 0.013038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GCO A 1 501 444 GCO GCO . D 3 BNG A 1 502 445 BNG BNG . E 3 BNG A 1 503 446 BNG BNG . F 3 BNG B 1 501 444 BNG BNG . G 3 BNG B 1 502 445 BNG BNG . H 3 BNG B 1 503 446 BNG BNG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GCO . . . C 2 114.954 -26.671 116.114 1 94.41 ? C1 GCO 501 A 1 HETATM 2 C C2 GCO . . . C 2 114.645 -25.967 117.435 1 98.37 ? C2 GCO 501 A 1 HETATM 3 C C3 GCO . . . C 2 113.811 -24.71 117.195 1 91.83 ? C3 GCO 501 A 1 HETATM 4 C C4 GCO . . . C 2 114.529 -23.483 117.748 1 81.9 ? C4 GCO 501 A 1 HETATM 5 C C5 GCO . . . C 2 114.095 -22.247 116.967 1 87.18 ? C5 GCO 501 A 1 HETATM 6 C C6 GCO . . . C 2 114.767 -22.225 115.604 1 81.34 ? C6 GCO 501 A 1 HETATM 7 O O1A GCO . . . C 2 114.103 -26.679 115.184 1 92.11 ? O1A GCO 501 A 1 HETATM 8 O O1B GCO . . . C 2 116.061 -27.251 115.963 1 69.96 ? O1B GCO 501 A 1 HETATM 9 O O2 GCO . . . C 2 113.908 -26.828 118.248 1 92.24 ? O2 GCO 501 A 1 HETATM 10 O O3 GCO . . . C 2 112.586 -24.857 117.855 1 92.07 ? O3 GCO 501 A 1 HETATM 11 O O4 GCO . . . C 2 114.202 -23.327 119.1 1 71.3 ? O4 GCO 501 A 1 HETATM 12 O O5 GCO . . . C 2 112.72 -22.265 116.764 1 105.26 ? O5 GCO 501 A 1 HETATM 13 O O6 GCO . . . C 2 113.83 -22.154 114.574 1 94.68 ? O6 GCO 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #