data_6E9O # _model_server_result.job_id HG8dTOEcD2mV8XJc6FbWGw _model_server_result.datetime_utc '2024-11-04 22:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e9o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6E9O # _exptl.entry_id 6E9O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-galactonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.81 _cell.angle_gamma 90 _cell.entry_id 6E9O _cell.length_a 217.07 _cell.length_b 70.71 _cell.length_c 107.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H12 O7' _chem_comp.formula_weight 196.155 _chem_comp.id J0M _chem_comp.mon_nstd_flag . _chem_comp.name 'D-galactonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms D-galactonate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 J0M doub 173 n n O2 C2 J0M sing 174 n n C6 O7 J0M sing 175 n n C6 C4 J0M sing 176 n n O3 C3 J0M sing 177 n n C4 C2 J0M sing 178 n n C4 O4 J0M sing 179 n n C2 C1 J0M sing 180 n n C1 C3 J0M sing 181 n n C1 O1 J0M sing 182 n n C3 C5 J0M sing 183 n n C5 O5 J0M sing 184 n n C4 H1 J0M sing 185 n n C5 H2 J0M sing 186 n n C5 H3 J0M sing 187 n n C3 H4 J0M sing 188 n n C1 H5 J0M sing 189 n n C2 H6 J0M sing 190 n n O1 H7 J0M sing 191 n n O2 H8 J0M sing 192 n n O3 H9 J0M sing 193 n n O4 H10 J0M sing 194 n n O5 H11 J0M sing 195 n n O7 H12 J0M sing 196 n n # _atom_sites.entry_id 6E9O _atom_sites.fract_transf_matrix[1][1] 0.004607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000964 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J0M B 1 501 444 J0M DRG . D 2 J0M A 1 501 444 J0M DRG . E 3 HOH B 1 601 2 HOH HOH . E 3 HOH B 2 602 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 J0M . . . D 2 187.109 -76.177 288.39 1 151.12 ? C4 J0M 501 A 1 HETATM 2 C C5 J0M . . . D 2 184.714 -79.347 290.312 1 183.24 ? C5 J0M 501 A 1 HETATM 3 C C6 J0M . . . D 2 188.348 -76.573 287.595 1 193.52 ? C6 J0M 501 A 1 HETATM 4 C C3 J0M . . . D 2 185.964 -79.732 289.523 1 195.9 ? C3 J0M 501 A 1 HETATM 5 C C1 J0M . . . D 2 186.901 -78.522 289.338 1 183.05 ? C1 J0M 501 A 1 HETATM 6 C C2 J0M . . . D 2 186.191 -77.389 288.595 1 168.11 ? C2 J0M 501 A 1 HETATM 7 O O1 J0M . . . D 2 187.33 -78.037 290.626 1 187.41 ? O1 J0M 501 A 1 HETATM 8 O O2 J0M . . . D 2 185.767 -77.846 287.3 1 180.07 ? O2 J0M 501 A 1 HETATM 9 O O3 J0M . . . D 2 185.568 -80.206 288.223 1 196.46 ? O3 J0M 501 A 1 HETATM 10 O O4 J0M . . . D 2 187.521 -75.65 289.654 1 148.25 ? O4 J0M 501 A 1 HETATM 11 O O5 J0M . . . D 2 185.112 -78.866 291.598 1 199.65 ? O5 J0M 501 A 1 HETATM 12 O O6 J0M . . . D 2 188.181 -77.443 286.709 1 209.58 ? O6 J0M 501 A 1 HETATM 13 O O7 J0M . . . D 2 189.411 -75.987 287.871 1 197.03 ? O7 J0M 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #