data_6EAK # _model_server_result.job_id yOyeIWOgkwUyfAkCQbg5LQ _model_server_result.datetime_utc '2024-10-19 20:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 6EAK # _exptl.entry_id 6EAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EAK _cell.length_a 168.45 _cell.length_b 168.45 _cell.length_c 168.45 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 F CYS 37 1_555 A SG CYS 439 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 155 F CYS 155 1_555 A SG CYS 290 F CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 A SG CYS 313 F CYS 313 1_555 A SG CYS 343 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 322 F CYS 322 1_555 A SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 358 F CYS 358 1_555 A SG CYS 367 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 A SG CYS 382 F CYS 382 1_555 A SG CYS 393 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 416 F CYS 416 1_555 A SG CYS 422 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EAK _atom_sites.fract_transf_matrix[1][1] 0.005936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 F 1 601 1 SO4 SO4 . C 2 SO4 F 1 602 2 SO4 SO4 . D 2 SO4 F 1 603 3 SO4 SO4 . E 2 SO4 F 1 604 4 SO4 SO4 . F 2 SO4 F 1 605 5 SO4 SO4 . G 2 SO4 F 1 606 6 SO4 SO4 . H 3 NHE F 1 607 1 NHE NHE . I 4 NI F 1 608 1 NI NI . J 5 5NK F 1 609 1 5NK LIG . K 6 HOH F 1 701 31 HOH HOH . K 6 HOH F 2 702 12 HOH HOH . K 6 HOH F 3 703 21 HOH HOH . K 6 HOH F 4 704 48 HOH HOH . K 6 HOH F 5 705 3 HOH HOH . K 6 HOH F 6 706 10 HOH HOH . K 6 HOH F 7 707 13 HOH HOH . K 6 HOH F 8 708 44 HOH HOH . K 6 HOH F 9 709 27 HOH HOH . K 6 HOH F 10 710 9 HOH HOH . K 6 HOH F 11 711 51 HOH HOH . K 6 HOH F 12 712 4 HOH HOH . K 6 HOH F 13 713 16 HOH HOH . K 6 HOH F 14 714 20 HOH HOH . K 6 HOH F 15 715 34 HOH HOH . K 6 HOH F 16 716 1 HOH HOH . K 6 HOH F 17 717 8 HOH HOH . K 6 HOH F 18 718 19 HOH HOH . K 6 HOH F 19 719 53 HOH HOH . K 6 HOH F 20 720 35 HOH HOH . K 6 HOH F 21 721 5 HOH HOH . K 6 HOH F 22 722 17 HOH HOH . K 6 HOH F 23 723 40 HOH HOH . K 6 HOH F 24 724 39 HOH HOH . K 6 HOH F 25 725 2 HOH HOH . K 6 HOH F 26 726 7 HOH HOH . K 6 HOH F 27 727 24 HOH HOH . K 6 HOH F 28 728 37 HOH HOH . K 6 HOH F 29 729 45 HOH HOH . K 6 HOH F 30 730 49 HOH HOH . K 6 HOH F 31 731 29 HOH HOH . K 6 HOH F 32 732 22 HOH HOH . K 6 HOH F 33 733 38 HOH HOH . K 6 HOH F 34 734 14 HOH HOH . K 6 HOH F 35 735 18 HOH HOH . K 6 HOH F 36 736 33 HOH HOH . K 6 HOH F 37 737 11 HOH HOH . K 6 HOH F 38 738 55 HOH HOH . K 6 HOH F 39 739 6 HOH HOH . K 6 HOH F 40 740 28 HOH HOH . K 6 HOH F 41 741 30 HOH HOH . K 6 HOH F 42 742 54 HOH HOH . K 6 HOH F 43 743 15 HOH HOH . K 6 HOH F 44 744 43 HOH HOH . K 6 HOH F 45 745 52 HOH HOH . K 6 HOH F 46 746 26 HOH HOH . K 6 HOH F 47 747 41 HOH HOH . K 6 HOH F 48 748 46 HOH HOH . K 6 HOH F 49 749 23 HOH HOH . K 6 HOH F 50 750 50 HOH HOH . K 6 HOH F 51 751 36 HOH HOH . K 6 HOH F 52 752 47 HOH HOH . K 6 HOH F 53 753 42 HOH HOH . K 6 HOH F 54 754 32 HOH HOH . K 6 HOH F 55 755 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.075 _atom_site.Cartn_y 15.722 _atom_site.Cartn_z 17.604 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 608 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #