data_6EBC
#
_model_server_result.job_id            DhCpjhVmkz7o3fNRV780QQ 
_model_server_result.datetime_utc      '2025-03-05 22:14:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ebc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    6EBC 
#
_exptl.entry_id    6EBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6EBC 
_cell.length_a            88.16 
_cell.length_b            88.16 
_cell.length_c            169.916 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,J,K,L,O,Q 1 1 
B,D,G,H,I,M,N,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
? 3 M N N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 83 n n 
S1 HS1 DTT sing 84 n n 
C1 C2 DTT sing 85 n n 
C1 H11 DTT sing 86 n n 
C1 H12 DTT sing 87 n n 
C2 O2 DTT sing 88 n n 
C2 C3 DTT sing 89 n n 
C2 H2 DTT sing 90 n n 
O2 HO2 DTT sing 91 n n 
C3 O3 DTT sing 92 n n 
C3 C4 DTT sing 93 n n 
C3 H3 DTT sing 94 n n 
O3 HO3 DTT sing 95 n n 
C4 S4 DTT sing 96 n n 
C4 H41 DTT sing 97 n n 
C4 H42 DTT sing 98 n n 
S4 HS2 DTT sing 99 n n 
#
_atom_sites.entry_id                     6EBC 
_atom_sites.fract_transf_matrix[1][1]    0.011343 
_atom_sites.fract_transf_matrix[1][2]    0.006549 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CL A 1 201 2 CL CL . 
F 2 CL A 1 202 5 CL CL . 
G 3 DTT B 1 201 2 DTT DTT . 
H 2 CL B 1 202 3 CL CL . 
I 2 CL B 1 203 6 CL CL . 
J 3 DTT C 1 201 3 DTT DTT . 
K 2 CL C 1 202 1 CL CL . 
L 2 CL C 1 203 7 CL CL . 
M 3 DTT D 1 201 1 DTT DTT . 
N 2 CL D 1 202 4 CL CL . 
O 4 HOH A 1 301 242 HOH HOH . 
O 4 HOH A 2 302 232 HOH HOH . 
O 4 HOH A 3 303 22 HOH HOH . 
O 4 HOH A 4 304 26 HOH HOH . 
O 4 HOH A 5 305 113 HOH HOH . 
O 4 HOH A 6 306 17 HOH HOH . 
O 4 HOH A 7 307 160 HOH HOH . 
O 4 HOH A 8 308 150 HOH HOH . 
O 4 HOH A 9 309 134 HOH HOH . 
O 4 HOH A 10 310 163 HOH HOH . 
O 4 HOH A 11 311 3 HOH HOH . 
O 4 HOH A 12 312 185 HOH HOH . 
O 4 HOH A 13 313 226 HOH HOH . 
O 4 HOH A 14 314 42 HOH HOH . 
O 4 HOH A 15 315 175 HOH HOH . 
O 4 HOH A 16 316 10 HOH HOH . 
O 4 HOH A 17 317 156 HOH HOH . 
O 4 HOH A 18 318 57 HOH HOH . 
O 4 HOH A 19 319 159 HOH HOH . 
O 4 HOH A 20 320 178 HOH HOH . 
O 4 HOH A 21 321 172 HOH HOH . 
O 4 HOH A 22 322 173 HOH HOH . 
O 4 HOH A 23 323 18 HOH HOH . 
O 4 HOH A 24 324 72 HOH HOH . 
O 4 HOH A 25 325 125 HOH HOH . 
O 4 HOH A 26 326 102 HOH HOH . 
O 4 HOH A 27 327 179 HOH HOH . 
O 4 HOH A 28 328 64 HOH HOH . 
O 4 HOH A 29 329 211 HOH HOH . 
O 4 HOH A 30 330 45 HOH HOH . 
O 4 HOH A 31 331 209 HOH HOH . 
O 4 HOH A 32 332 19 HOH HOH . 
O 4 HOH A 33 333 154 HOH HOH . 
O 4 HOH A 34 334 138 HOH HOH . 
O 4 HOH A 35 335 131 HOH HOH . 
O 4 HOH A 36 336 121 HOH HOH . 
O 4 HOH A 37 337 207 HOH HOH . 
O 4 HOH A 38 338 240 HOH HOH . 
O 4 HOH A 39 339 36 HOH HOH . 
O 4 HOH A 40 340 65 HOH HOH . 
O 4 HOH A 41 341 167 HOH HOH . 
O 4 HOH A 42 342 218 HOH HOH . 
O 4 HOH A 43 343 234 HOH HOH . 
O 4 HOH A 44 344 194 HOH HOH . 
O 4 HOH A 45 345 40 HOH HOH . 
O 4 HOH A 46 346 239 HOH HOH . 
O 4 HOH A 47 347 143 HOH HOH . 
O 4 HOH A 48 348 66 HOH HOH . 
O 4 HOH A 49 349 197 HOH HOH . 
O 4 HOH A 50 350 155 HOH HOH . 
O 4 HOH A 51 351 221 HOH HOH . 
O 4 HOH A 52 352 124 HOH HOH . 
O 4 HOH A 53 353 214 HOH HOH . 
O 4 HOH A 54 354 189 HOH HOH . 
O 4 HOH A 55 355 97 HOH HOH . 
O 4 HOH A 56 356 202 HOH HOH . 
P 4 HOH B 1 301 170 HOH HOH . 
P 4 HOH B 2 302 210 HOH HOH . 
P 4 HOH B 3 303 237 HOH HOH . 
P 4 HOH B 4 304 224 HOH HOH . 
P 4 HOH B 5 305 196 HOH HOH . 
P 4 HOH B 6 306 118 HOH HOH . 
P 4 HOH B 7 307 244 HOH HOH . 
P 4 HOH B 8 308 130 HOH HOH . 
P 4 HOH B 9 309 25 HOH HOH . 
P 4 HOH B 10 310 68 HOH HOH . 
P 4 HOH B 11 311 140 HOH HOH . 
P 4 HOH B 12 312 11 HOH HOH . 
P 4 HOH B 13 313 50 HOH HOH . 
P 4 HOH B 14 314 46 HOH HOH . 
P 4 HOH B 15 315 30 HOH HOH . 
P 4 HOH B 16 316 123 HOH HOH . 
P 4 HOH B 17 317 144 HOH HOH . 
P 4 HOH B 18 318 104 HOH HOH . 
P 4 HOH B 19 319 88 HOH HOH . 
P 4 HOH B 20 320 107 HOH HOH . 
P 4 HOH B 21 321 157 HOH HOH . 
P 4 HOH B 22 322 253 HOH HOH . 
P 4 HOH B 23 323 149 HOH HOH . 
P 4 HOH B 24 324 15 HOH HOH . 
P 4 HOH B 25 325 73 HOH HOH . 
P 4 HOH B 26 326 108 HOH HOH . 
P 4 HOH B 27 327 56 HOH HOH . 
P 4 HOH B 28 328 14 HOH HOH . 
P 4 HOH B 29 329 204 HOH HOH . 
P 4 HOH B 30 330 231 HOH HOH . 
P 4 HOH B 31 331 81 HOH HOH . 
P 4 HOH B 32 332 99 HOH HOH . 
P 4 HOH B 33 333 94 HOH HOH . 
P 4 HOH B 34 334 162 HOH HOH . 
P 4 HOH B 35 335 13 HOH HOH . 
P 4 HOH B 36 336 129 HOH HOH . 
P 4 HOH B 37 337 251 HOH HOH . 
P 4 HOH B 38 338 171 HOH HOH . 
P 4 HOH B 39 339 9 HOH HOH . 
P 4 HOH B 40 340 70 HOH HOH . 
P 4 HOH B 41 341 24 HOH HOH . 
P 4 HOH B 42 342 254 HOH HOH . 
P 4 HOH B 43 343 146 HOH HOH . 
P 4 HOH B 44 344 187 HOH HOH . 
P 4 HOH B 45 345 16 HOH HOH . 
P 4 HOH B 46 346 84 HOH HOH . 
P 4 HOH B 47 347 44 HOH HOH . 
P 4 HOH B 48 348 86 HOH HOH . 
P 4 HOH B 49 349 82 HOH HOH . 
P 4 HOH B 50 350 252 HOH HOH . 
P 4 HOH B 51 351 32 HOH HOH . 
P 4 HOH B 52 352 152 HOH HOH . 
P 4 HOH B 53 353 255 HOH HOH . 
P 4 HOH B 54 354 182 HOH HOH . 
P 4 HOH B 55 355 139 HOH HOH . 
P 4 HOH B 56 356 186 HOH HOH . 
P 4 HOH B 57 357 256 HOH HOH . 
P 4 HOH B 58 358 133 HOH HOH . 
P 4 HOH B 59 359 241 HOH HOH . 
P 4 HOH B 60 360 109 HOH HOH . 
P 4 HOH B 61 361 76 HOH HOH . 
P 4 HOH B 62 362 168 HOH HOH . 
P 4 HOH B 63 363 114 HOH HOH . 
P 4 HOH B 64 364 195 HOH HOH . 
P 4 HOH B 65 365 188 HOH HOH . 
P 4 HOH B 66 366 217 HOH HOH . 
P 4 HOH B 67 367 245 HOH HOH . 
P 4 HOH B 68 368 38 HOH HOH . 
Q 4 HOH C 1 301 74 HOH HOH . 
Q 4 HOH C 2 302 206 HOH HOH . 
Q 4 HOH C 3 303 249 HOH HOH . 
Q 4 HOH C 4 304 122 HOH HOH . 
Q 4 HOH C 5 305 136 HOH HOH . 
Q 4 HOH C 6 306 127 HOH HOH . 
Q 4 HOH C 7 307 69 HOH HOH . 
Q 4 HOH C 8 308 83 HOH HOH . 
Q 4 HOH C 9 309 250 HOH HOH . 
Q 4 HOH C 10 310 103 HOH HOH . 
Q 4 HOH C 11 311 132 HOH HOH . 
Q 4 HOH C 12 312 216 HOH HOH . 
Q 4 HOH C 13 313 20 HOH HOH . 
Q 4 HOH C 14 314 61 HOH HOH . 
Q 4 HOH C 15 315 39 HOH HOH . 
Q 4 HOH C 16 316 181 HOH HOH . 
Q 4 HOH C 17 317 85 HOH HOH . 
Q 4 HOH C 18 318 63 HOH HOH . 
Q 4 HOH C 19 319 116 HOH HOH . 
Q 4 HOH C 20 320 177 HOH HOH . 
Q 4 HOH C 21 321 48 HOH HOH . 
Q 4 HOH C 22 322 128 HOH HOH . 
Q 4 HOH C 23 323 176 HOH HOH . 
Q 4 HOH C 24 324 33 HOH HOH . 
Q 4 HOH C 25 325 153 HOH HOH . 
Q 4 HOH C 26 326 51 HOH HOH . 
Q 4 HOH C 27 327 158 HOH HOH . 
Q 4 HOH C 28 328 37 HOH HOH . 
Q 4 HOH C 29 329 112 HOH HOH . 
Q 4 HOH C 30 330 203 HOH HOH . 
Q 4 HOH C 31 331 174 HOH HOH . 
Q 4 HOH C 32 332 5 HOH HOH . 
Q 4 HOH C 33 333 201 HOH HOH . 
Q 4 HOH C 34 334 161 HOH HOH . 
Q 4 HOH C 35 335 34 HOH HOH . 
Q 4 HOH C 36 336 62 HOH HOH . 
Q 4 HOH C 37 337 12 HOH HOH . 
Q 4 HOH C 38 338 89 HOH HOH . 
Q 4 HOH C 39 339 4 HOH HOH . 
Q 4 HOH C 40 340 215 HOH HOH . 
Q 4 HOH C 41 341 7 HOH HOH . 
Q 4 HOH C 42 342 126 HOH HOH . 
Q 4 HOH C 43 343 23 HOH HOH . 
Q 4 HOH C 44 344 80 HOH HOH . 
Q 4 HOH C 45 345 59 HOH HOH . 
Q 4 HOH C 46 346 223 HOH HOH . 
Q 4 HOH C 47 347 52 HOH HOH . 
Q 4 HOH C 48 348 49 HOH HOH . 
Q 4 HOH C 49 349 67 HOH HOH . 
Q 4 HOH C 50 350 90 HOH HOH . 
Q 4 HOH C 51 351 78 HOH HOH . 
Q 4 HOH C 52 352 110 HOH HOH . 
Q 4 HOH C 53 353 35 HOH HOH . 
Q 4 HOH C 54 354 71 HOH HOH . 
Q 4 HOH C 55 355 243 HOH HOH . 
Q 4 HOH C 56 356 227 HOH HOH . 
Q 4 HOH C 57 357 115 HOH HOH . 
Q 4 HOH C 58 358 229 HOH HOH . 
Q 4 HOH C 59 359 54 HOH HOH . 
Q 4 HOH C 60 360 142 HOH HOH . 
Q 4 HOH C 61 361 106 HOH HOH . 
Q 4 HOH C 62 362 199 HOH HOH . 
Q 4 HOH C 63 363 21 HOH HOH . 
Q 4 HOH C 64 364 190 HOH HOH . 
Q 4 HOH C 65 365 191 HOH HOH . 
Q 4 HOH C 66 366 213 HOH HOH . 
Q 4 HOH C 67 367 222 HOH HOH . 
Q 4 HOH C 68 368 198 HOH HOH . 
R 4 HOH D 1 301 235 HOH HOH . 
R 4 HOH D 2 302 248 HOH HOH . 
R 4 HOH D 3 303 137 HOH HOH . 
R 4 HOH D 4 304 79 HOH HOH . 
R 4 HOH D 5 305 246 HOH HOH . 
R 4 HOH D 6 306 135 HOH HOH . 
R 4 HOH D 7 307 164 HOH HOH . 
R 4 HOH D 8 308 43 HOH HOH . 
R 4 HOH D 9 309 183 HOH HOH . 
R 4 HOH D 10 310 29 HOH HOH . 
R 4 HOH D 11 311 87 HOH HOH . 
R 4 HOH D 12 312 28 HOH HOH . 
R 4 HOH D 13 313 120 HOH HOH . 
R 4 HOH D 14 314 95 HOH HOH . 
R 4 HOH D 15 315 117 HOH HOH . 
R 4 HOH D 16 316 100 HOH HOH . 
R 4 HOH D 17 317 184 HOH HOH . 
R 4 HOH D 18 318 180 HOH HOH . 
R 4 HOH D 19 319 58 HOH HOH . 
R 4 HOH D 20 320 96 HOH HOH . 
R 4 HOH D 21 321 141 HOH HOH . 
R 4 HOH D 22 322 31 HOH HOH . 
R 4 HOH D 23 323 53 HOH HOH . 
R 4 HOH D 24 324 105 HOH HOH . 
R 4 HOH D 25 325 148 HOH HOH . 
R 4 HOH D 26 326 75 HOH HOH . 
R 4 HOH D 27 327 238 HOH HOH . 
R 4 HOH D 28 328 119 HOH HOH . 
R 4 HOH D 29 329 77 HOH HOH . 
R 4 HOH D 30 330 60 HOH HOH . 
R 4 HOH D 31 331 27 HOH HOH . 
R 4 HOH D 32 332 145 HOH HOH . 
R 4 HOH D 33 333 41 HOH HOH . 
R 4 HOH D 34 334 111 HOH HOH . 
R 4 HOH D 35 335 228 HOH HOH . 
R 4 HOH D 36 336 98 HOH HOH . 
R 4 HOH D 37 337 258 HOH HOH . 
R 4 HOH D 38 338 147 HOH HOH . 
R 4 HOH D 39 339 247 HOH HOH . 
R 4 HOH D 40 340 219 HOH HOH . 
R 4 HOH D 41 341 165 HOH HOH . 
R 4 HOH D 42 342 92 HOH HOH . 
R 4 HOH D 43 343 151 HOH HOH . 
R 4 HOH D 44 344 220 HOH HOH . 
R 4 HOH D 45 345 55 HOH HOH . 
R 4 HOH D 46 346 91 HOH HOH . 
R 4 HOH D 47 347 101 HOH HOH . 
R 4 HOH D 48 348 166 HOH HOH . 
R 4 HOH D 49 349 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . J 3 -36.503 5.301 -35.338 1 70.85 ? S1 DTT 201 C 1 
HETATM 2 C C1 DTT . . . J 3 -37.508 4.481 -34.079 1 61.76 ? C1 DTT 201 C 1 
HETATM 3 C C2 DTT . . . J 3 -38.939 4.424 -34.563 1 62.96 ? C2 DTT 201 C 1 
HETATM 4 O O2 DTT . . . J 3 -39.039 3.313 -35.419 1 52.84 ? O2 DTT 201 C 1 
HETATM 5 C C3 DTT . . . J 3 -39.371 5.723 -35.294 1 63.28 ? C3 DTT 201 C 1 
HETATM 6 O O3 DTT . . . J 3 -39.067 5.606 -36.667 1 60.27 ? O3 DTT 201 C 1 
HETATM 7 C C4 DTT . . . J 3 -40.833 6.085 -35.138 1 67.42 ? C4 DTT 201 C 1 
HETATM 8 S S4 DTT . . . J 3 -41.137 7.804 -34.631 1 56.73 ? S4 DTT 201 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#