data_6EBD
#
_model_server_result.job_id            ip5-iksn0JNggcNyL59TTA 
_model_server_result.datetime_utc      '2025-03-05 22:17:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ebd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    6EBD 
#
_exptl.entry_id    6EBD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              207.357 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6S)-6,8-disulfanyloctanamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6EBD 
_cell.length_a            87.675 
_cell.length_b            87.675 
_cell.length_c            179.609 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EBD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
#
_chem_comp.formula           'C8 H17 N O S2' 
_chem_comp.formula_weight    207.357 
_chem_comp.id                J3S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6S)-6,8-disulfanyloctanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C6 J3S sing 173 n n 
C6 C5 J3S sing 174 n n 
C6 C7 J3S sing 175 n n 
C5 C4 J3S sing 176 n n 
C7 C8 J3S sing 177 n n 
C4 C3 J3S sing 178 n n 
C3 C2 J3S sing 179 n n 
O1 C1 J3S doub 180 n n 
C8 S2 J3S sing 181 n n 
C1 C2 J3S sing 182 n n 
C1 N1 J3S sing 183 n n 
C2 H1 J3S sing 184 n n 
C2 H2 J3S sing 185 n n 
C3 H3 J3S sing 186 n n 
C3 H4 J3S sing 187 n n 
C4 H5 J3S sing 188 n n 
C4 H6 J3S sing 189 n n 
C5 H7 J3S sing 190 n n 
C5 H8 J3S sing 191 n n 
C6 H9 J3S sing 192 n n 
C7 H10 J3S sing 193 n n 
C7 H11 J3S sing 194 n n 
C8 H12 J3S sing 195 n n 
C8 H13 J3S sing 196 n n 
N1 H14 J3S sing 197 n n 
N1 H15 J3S sing 198 n n 
S1 H16 J3S sing 199 n n 
S2 H17 J3S sing 200 n n 
#
_atom_sites.entry_id                     6EBD 
_atom_sites.fract_transf_matrix[1][1]    0.011406 
_atom_sites.fract_transf_matrix[1][2]    0.006585 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01317 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 J3S A 1 201 2 J3S LPA . 
F 3 CL A 1 202 1 CL CL . 
G 2 J3S B 1 201 1 J3S LPA . 
H 3 CL B 1 202 2 CL CL . 
I 2 J3S C 1 201 3 J3S LPA . 
J 3 CL C 1 202 3 CL CL . 
K 3 CL D 1 201 4 CL CL . 
L 4 HOH A 1 301 13 HOH HOH . 
L 4 HOH A 2 302 7 HOH HOH . 
L 4 HOH A 3 303 27 HOH HOH . 
L 4 HOH A 4 304 6 HOH HOH . 
M 4 HOH B 1 301 11 HOH HOH . 
M 4 HOH B 2 302 26 HOH HOH . 
M 4 HOH B 3 303 12 HOH HOH . 
M 4 HOH B 4 304 15 HOH HOH . 
N 4 HOH C 1 301 17 HOH HOH . 
N 4 HOH C 2 302 25 HOH HOH . 
N 4 HOH C 3 303 24 HOH HOH . 
N 4 HOH C 4 304 10 HOH HOH . 
N 4 HOH C 5 305 16 HOH HOH . 
N 4 HOH C 6 306 23 HOH HOH . 
O 4 HOH D 1 301 22 HOH HOH . 
O 4 HOH D 2 302 5 HOH HOH . 
O 4 HOH D 3 303 20 HOH HOH . 
O 4 HOH D 4 304 14 HOH HOH . 
O 4 HOH D 5 305 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 J3S . . . G 2 -19.809 204.2 4.978 0.85 73.57 ? C1 J3S 201 B 1 
HETATM 2 O O1 J3S . . . G 2 -19.356 204.738 5.976 0.85 62.55 ? O1 J3S 201 B 1 
HETATM 3 C C2 J3S . . . G 2 -19.818 202.697 4.789 0.5 70.74 ? C2 J3S 201 B 1 
HETATM 4 C C3 J3S . . . G 2 -19.423 202.204 3.396 0.5 67.51 ? C3 J3S 201 B 1 
HETATM 5 C C4 J3S . . . G 2 -19.398 200.683 3.262 0.85 65.5 ? C4 J3S 201 B 1 
HETATM 6 C C5 J3S . . . G 2 -18.036 200.01 3.079 0.85 67.37 ? C5 J3S 201 B 1 
HETATM 7 C C6 J3S . . . G 2 -17.953 198.467 3.098 0.85 71.46 ? C6 J3S 201 B 1 
HETATM 8 C C7 J3S . . . G 2 -18.967 197.679 2.26 0.85 71.8 ? C7 J3S 201 B 1 
HETATM 9 C C8 J3S . . . G 2 -19.187 196.233 2.724 0.85 71.53 ? C8 J3S 201 B 1 
HETATM 10 N N1 J3S . . . G 2 -20.387 204.977 3.861 0.5 70.99 ? N1 J3S 201 B 1 
HETATM 11 S S1 J3S . . . G 2 -16.315 197.871 2.562 0.8 75.7 ? S1 J3S 201 B 1 
HETATM 12 S S2 J3S . . . G 2 -20.913 195.824 3.113 0.85 68.97 ? S2 J3S 201 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#