data_6EBG # _model_server_result.job_id TzBg2WL3k7Nq4LpfQygl5Q _model_server_result.datetime_utc '2025-03-05 22:11:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ebg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6EBG # _exptl.entry_id 6EBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.357 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-6,8-disulfanyloctanamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EBG _cell.length_a 88.646 _cell.length_b 88.646 _cell.length_c 180.107 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C8 H17 N O S2' _chem_comp.formula_weight 207.357 _chem_comp.id J3S _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-6,8-disulfanyloctanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C6 J3S sing 173 n n C6 C5 J3S sing 174 n n C6 C7 J3S sing 175 n n C5 C4 J3S sing 176 n n C7 C8 J3S sing 177 n n C4 C3 J3S sing 178 n n C3 C2 J3S sing 179 n n O1 C1 J3S doub 180 n n C8 S2 J3S sing 181 n n C1 C2 J3S sing 182 n n C1 N1 J3S sing 183 n n C2 H1 J3S sing 184 n n C2 H2 J3S sing 185 n n C3 H3 J3S sing 186 n n C3 H4 J3S sing 187 n n C4 H5 J3S sing 188 n n C4 H6 J3S sing 189 n n C5 H7 J3S sing 190 n n C5 H8 J3S sing 191 n n C6 H9 J3S sing 192 n n C7 H10 J3S sing 193 n n C7 H11 J3S sing 194 n n C8 H12 J3S sing 195 n n C8 H13 J3S sing 196 n n N1 H14 J3S sing 197 n n N1 H15 J3S sing 198 n n S1 H16 J3S sing 199 n n S2 H17 J3S sing 200 n n # _atom_sites.entry_id 6EBG _atom_sites.fract_transf_matrix[1][1] 0.011281 _atom_sites.fract_transf_matrix[1][2] 0.006513 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 J3S A 1 201 1 J3S LPA . F 2 J3S A 1 202 4 J3S LPA . G 2 J3S C 1 201 3 J3S LPA . H 2 J3S D 1 201 2 J3S LPA . I 3 HOH A 1 301 35 HOH HOH . I 3 HOH A 2 302 37 HOH HOH . I 3 HOH A 3 303 2 HOH HOH . I 3 HOH A 4 304 61 HOH HOH . I 3 HOH A 5 305 14 HOH HOH . I 3 HOH A 6 306 52 HOH HOH . I 3 HOH A 7 307 16 HOH HOH . I 3 HOH A 8 308 40 HOH HOH . I 3 HOH A 9 309 54 HOH HOH . I 3 HOH A 10 310 22 HOH HOH . I 3 HOH A 11 311 38 HOH HOH . I 3 HOH A 12 312 41 HOH HOH . I 3 HOH A 13 313 53 HOH HOH . I 3 HOH A 14 314 43 HOH HOH . I 3 HOH A 15 315 71 HOH HOH . I 3 HOH A 16 316 1 HOH HOH . I 3 HOH A 17 317 19 HOH HOH . I 3 HOH A 18 318 65 HOH HOH . I 3 HOH A 19 319 47 HOH HOH . I 3 HOH A 20 320 70 HOH HOH . I 3 HOH A 21 321 49 HOH HOH . I 3 HOH A 22 322 67 HOH HOH . I 3 HOH A 23 323 46 HOH HOH . J 3 HOH B 1 201 24 HOH HOH . J 3 HOH B 2 202 25 HOH HOH . J 3 HOH B 3 203 57 HOH HOH . J 3 HOH B 4 204 9 HOH HOH . J 3 HOH B 5 205 11 HOH HOH . J 3 HOH B 6 206 23 HOH HOH . J 3 HOH B 7 207 42 HOH HOH . J 3 HOH B 8 208 17 HOH HOH . J 3 HOH B 9 209 39 HOH HOH . J 3 HOH B 10 210 8 HOH HOH . J 3 HOH B 11 211 33 HOH HOH . J 3 HOH B 12 212 12 HOH HOH . J 3 HOH B 13 213 10 HOH HOH . J 3 HOH B 14 214 32 HOH HOH . J 3 HOH B 15 215 29 HOH HOH . J 3 HOH B 16 216 45 HOH HOH . J 3 HOH B 17 217 56 HOH HOH . J 3 HOH B 18 218 62 HOH HOH . J 3 HOH B 19 219 68 HOH HOH . J 3 HOH B 20 220 44 HOH HOH . K 3 HOH C 1 301 50 HOH HOH . K 3 HOH C 2 302 28 HOH HOH . K 3 HOH C 3 303 21 HOH HOH . K 3 HOH C 4 304 4 HOH HOH . K 3 HOH C 5 305 15 HOH HOH . K 3 HOH C 6 306 6 HOH HOH . K 3 HOH C 7 307 5 HOH HOH . K 3 HOH C 8 308 48 HOH HOH . K 3 HOH C 9 309 20 HOH HOH . K 3 HOH C 10 310 51 HOH HOH . K 3 HOH C 11 311 55 HOH HOH . K 3 HOH C 12 312 69 HOH HOH . K 3 HOH C 13 313 58 HOH HOH . L 3 HOH D 1 301 66 HOH HOH . L 3 HOH D 2 302 3 HOH HOH . L 3 HOH D 3 303 30 HOH HOH . L 3 HOH D 4 304 34 HOH HOH . L 3 HOH D 5 305 18 HOH HOH . L 3 HOH D 6 306 27 HOH HOH . L 3 HOH D 7 307 13 HOH HOH . L 3 HOH D 8 308 26 HOH HOH . L 3 HOH D 9 309 31 HOH HOH . L 3 HOH D 10 310 7 HOH HOH . L 3 HOH D 11 311 63 HOH HOH . L 3 HOH D 12 312 36 HOH HOH . L 3 HOH D 13 313 64 HOH HOH . L 3 HOH D 14 314 59 HOH HOH . L 3 HOH D 15 315 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J3S . . . F 2 54.941 8.789 6.786 0.6 65.35 ? C1 J3S 202 A 1 HETATM 2 O O1 J3S . . . F 2 54.631 8.8 5.616 0.6 59.07 ? O1 J3S 202 A 1 HETATM 3 C C2 J3S . . . F 2 53.989 8.404 7.892 0.6 64.53 ? C2 J3S 202 A 1 HETATM 4 C C3 J3S . . . F 2 52.571 8.113 7.426 0.6 65.22 ? C3 J3S 202 A 1 HETATM 5 C C4 J3S . . . F 2 51.494 8.649 8.345 0.8 62.24 ? C4 J3S 202 A 1 HETATM 6 C C5 J3S . . . F 2 50.709 7.622 9.153 0.8 65.9 ? C5 J3S 202 A 1 HETATM 7 C C6 J3S . . . F 2 49.235 7.444 8.818 0.8 65.69 ? C6 J3S 202 A 1 HETATM 8 C C7 J3S . . . F 2 48.571 6.362 9.681 0.6 58.87 ? C7 J3S 202 A 1 HETATM 9 C C8 J3S . . . F 2 48.58 4.965 9.07 0.6 54.09 ? C8 J3S 202 A 1 HETATM 10 N N1 J3S . . . F 2 56.288 9.155 7.239 0.6 66.6 ? N1 J3S 202 A 1 HETATM 11 S S1 J3S . . . F 2 48.405 9.064 8.882 0.8 66.12 ? S1 J3S 202 A 1 HETATM 12 S S2 J3S . . . F 2 47.252 4.697 7.863 0.6 51.95 ? S2 J3S 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 12 #