data_6EC0
#
_model_server_result.job_id            sd-3L3fMnmbPw3c89PtPcg 
_model_server_result.datetime_utc      '2024-12-21 12:46:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ec0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    6EC0 
#
_exptl.entry_id    6EC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6EC0 
_cell.length_a            106.685 
_cell.length_b            106.685 
_cell.length_c            70.321 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 23.440333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 1 A MET 225 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc2 A SD MET 1 A MET 225 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? 
metalc ? metalc3 A OD2 ASP 37 A ASP 261 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc4 A OD2 ASP 41 A ASP 265 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc5 A OE2 GLU 98 A GLU 322 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc6 D CD CD . A CD 402 6_554 B OE1 GLU 97 B GLU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc7 D CD CD . A CD 402 6_554 B NZ LYS 100 B LYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc8 B OD1 ASP 41 B ASP 233 1_555 I NI NI . B NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc9 B OE1 GLU 82 B GLU 274 1_555 G CD CD . B CD 301 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6EC0 
_atom_sites.fract_transf_matrix[1][1]    0.009373 
_atom_sites.fract_transf_matrix[1][2]    0.005412 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010823 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CD A 1 401 1 CD CD . 
D 3 CD A 1 402 2 CD CD . 
E 3 CD A 1 403 7 CD CD . 
F 4 CO A 1 404 1 CO CO . 
G 3 CD B 1 301 8 CD CD . 
H 4 CO B 1 302 2 CO CO . 
I 5 NI B 1 303 2 NI NI . 
J 5 NI B 1 304 3 NI NI . 
K 6 HOH A 1 501 4 HOH HOH . 
K 6 HOH A 2 502 22 HOH HOH . 
K 6 HOH A 3 503 7 HOH HOH . 
K 6 HOH A 4 504 20 HOH HOH . 
K 6 HOH A 5 505 2 HOH HOH . 
K 6 HOH A 6 506 3 HOH HOH . 
K 6 HOH A 7 507 8 HOH HOH . 
K 6 HOH A 8 508 21 HOH HOH . 
K 6 HOH A 9 509 6 HOH HOH . 
K 6 HOH A 10 510 14 HOH HOH . 
K 6 HOH A 11 511 30 HOH HOH . 
K 6 HOH A 12 512 11 HOH HOH . 
K 6 HOH A 13 513 12 HOH HOH . 
K 6 HOH A 14 514 1 HOH HOH . 
K 6 HOH A 15 515 18 HOH HOH . 
K 6 HOH A 16 516 16 HOH HOH . 
K 6 HOH A 17 517 17 HOH HOH . 
K 6 HOH A 18 518 33 HOH HOH . 
L 6 HOH B 1 401 23 HOH HOH . 
L 6 HOH B 2 402 9 HOH HOH . 
L 6 HOH B 3 403 26 HOH HOH . 
L 6 HOH B 4 404 31 HOH HOH . 
L 6 HOH B 5 405 29 HOH HOH . 
L 6 HOH B 6 406 25 HOH HOH . 
L 6 HOH B 7 407 24 HOH HOH . 
L 6 HOH B 8 408 5 HOH HOH . 
L 6 HOH B 9 409 27 HOH HOH . 
L 6 HOH B 10 410 35 HOH HOH . 
L 6 HOH B 11 411 34 HOH HOH . 
L 6 HOH B 12 412 32 HOH HOH . 
L 6 HOH B 13 413 13 HOH HOH . 
L 6 HOH B 14 414 28 HOH HOH . 
L 6 HOH B 15 415 15 HOH HOH . 
L 6 HOH B 16 416 19 HOH HOH . 
L 6 HOH B 17 417 10 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               25.841 
_atom_site.Cartn_y               -31.785 
_atom_site.Cartn_z               -6.687 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        166 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#