data_6EC6 # _model_server_result.job_id 9AXzFCH0lOYClve8dDHrUg _model_server_result.datetime_utc '2025-08-31 18:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ec6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6EC6 # _exptl.entry_id 6EC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EC6 _cell.length_a 88.292 _cell.length_b 137.916 _cell.length_c 153.837 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,3 B,E,F,H 1 2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -88.292 0 0 3 'crystal symmetry operation' 2_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 137.916 153.837 4 'crystal symmetry operation' 2_466 x-1,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 -88.292 137.916 153.837 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6EC6 _atom_sites.fract_transf_matrix[1][1] 0.011326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 701 1 GOL GOL . D 3 CL A 1 702 2 CL CL . E 2 GOL B 1 701 2 GOL GOL . F 3 CL B 1 702 1 CL CL . G 4 HOH A 1 801 149 HOH HOH . G 4 HOH A 2 802 165 HOH HOH . G 4 HOH A 3 803 118 HOH HOH . G 4 HOH A 4 804 68 HOH HOH . G 4 HOH A 5 805 103 HOH HOH . G 4 HOH A 6 806 150 HOH HOH . G 4 HOH A 7 807 70 HOH HOH . G 4 HOH A 8 808 108 HOH HOH . G 4 HOH A 9 809 23 HOH HOH . G 4 HOH A 10 810 116 HOH HOH . G 4 HOH A 11 811 76 HOH HOH . G 4 HOH A 12 812 243 HOH HOH . G 4 HOH A 13 813 1 HOH HOH . G 4 HOH A 14 814 80 HOH HOH . G 4 HOH A 15 815 188 HOH HOH . G 4 HOH A 16 816 46 HOH HOH . G 4 HOH A 17 817 89 HOH HOH . G 4 HOH A 18 818 31 HOH HOH . G 4 HOH A 19 819 173 HOH HOH . G 4 HOH A 20 820 199 HOH HOH . G 4 HOH A 21 821 36 HOH HOH . G 4 HOH A 22 822 25 HOH HOH . G 4 HOH A 23 823 43 HOH HOH . G 4 HOH A 24 824 139 HOH HOH . G 4 HOH A 25 825 22 HOH HOH . G 4 HOH A 26 826 21 HOH HOH . G 4 HOH A 27 827 203 HOH HOH . G 4 HOH A 28 828 93 HOH HOH . G 4 HOH A 29 829 42 HOH HOH . G 4 HOH A 30 830 157 HOH HOH . G 4 HOH A 31 831 79 HOH HOH . G 4 HOH A 32 832 19 HOH HOH . G 4 HOH A 33 833 81 HOH HOH . G 4 HOH A 34 834 37 HOH HOH . G 4 HOH A 35 835 6 HOH HOH . G 4 HOH A 36 836 207 HOH HOH . G 4 HOH A 37 837 176 HOH HOH . G 4 HOH A 38 838 228 HOH HOH . G 4 HOH A 39 839 94 HOH HOH . G 4 HOH A 40 840 49 HOH HOH . G 4 HOH A 41 841 104 HOH HOH . G 4 HOH A 42 842 39 HOH HOH . G 4 HOH A 43 843 210 HOH HOH . G 4 HOH A 44 844 20 HOH HOH . G 4 HOH A 45 845 51 HOH HOH . G 4 HOH A 46 846 168 HOH HOH . G 4 HOH A 47 847 128 HOH HOH . G 4 HOH A 48 848 14 HOH HOH . G 4 HOH A 49 849 95 HOH HOH . G 4 HOH A 50 850 102 HOH HOH . G 4 HOH A 51 851 73 HOH HOH . G 4 HOH A 52 852 92 HOH HOH . G 4 HOH A 53 853 141 HOH HOH . G 4 HOH A 54 854 64 HOH HOH . G 4 HOH A 55 855 28 HOH HOH . G 4 HOH A 56 856 62 HOH HOH . G 4 HOH A 57 857 244 HOH HOH . G 4 HOH A 58 858 47 HOH HOH . G 4 HOH A 59 859 148 HOH HOH . G 4 HOH A 60 860 112 HOH HOH . G 4 HOH A 61 861 3 HOH HOH . G 4 HOH A 62 862 10 HOH HOH . G 4 HOH A 63 863 83 HOH HOH . G 4 HOH A 64 864 163 HOH HOH . G 4 HOH A 65 865 35 HOH HOH . G 4 HOH A 66 866 60 HOH HOH . G 4 HOH A 67 867 164 HOH HOH . G 4 HOH A 68 868 156 HOH HOH . G 4 HOH A 69 869 143 HOH HOH . G 4 HOH A 70 870 155 HOH HOH . G 4 HOH A 71 871 172 HOH HOH . G 4 HOH A 72 872 24 HOH HOH . G 4 HOH A 73 873 191 HOH HOH . G 4 HOH A 74 874 117 HOH HOH . G 4 HOH A 75 875 100 HOH HOH . G 4 HOH A 76 876 50 HOH HOH . G 4 HOH A 77 877 226 HOH HOH . G 4 HOH A 78 878 135 HOH HOH . G 4 HOH A 79 879 101 HOH HOH . G 4 HOH A 80 880 246 HOH HOH . G 4 HOH A 81 881 183 HOH HOH . G 4 HOH A 82 882 166 HOH HOH . G 4 HOH A 83 883 88 HOH HOH . G 4 HOH A 84 884 123 HOH HOH . G 4 HOH A 85 885 144 HOH HOH . G 4 HOH A 86 886 162 HOH HOH . G 4 HOH A 87 887 140 HOH HOH . G 4 HOH A 88 888 131 HOH HOH . G 4 HOH A 89 889 178 HOH HOH . G 4 HOH A 90 890 109 HOH HOH . G 4 HOH A 91 891 200 HOH HOH . G 4 HOH A 92 892 174 HOH HOH . G 4 HOH A 93 893 213 HOH HOH . G 4 HOH A 94 894 145 HOH HOH . G 4 HOH A 95 895 44 HOH HOH . G 4 HOH A 96 896 219 HOH HOH . G 4 HOH A 97 897 187 HOH HOH . G 4 HOH A 98 898 45 HOH HOH . G 4 HOH A 99 899 169 HOH HOH . G 4 HOH A 100 900 48 HOH HOH . G 4 HOH A 101 901 177 HOH HOH . G 4 HOH A 102 902 235 HOH HOH . G 4 HOH A 103 903 215 HOH HOH . G 4 HOH A 104 904 218 HOH HOH . G 4 HOH A 105 905 111 HOH HOH . G 4 HOH A 106 906 239 HOH HOH . G 4 HOH A 107 907 237 HOH HOH . G 4 HOH A 108 908 245 HOH HOH . G 4 HOH A 109 909 158 HOH HOH . G 4 HOH A 110 910 90 HOH HOH . G 4 HOH A 111 911 238 HOH HOH . G 4 HOH A 112 912 185 HOH HOH . G 4 HOH A 113 913 154 HOH HOH . G 4 HOH A 114 914 241 HOH HOH . G 4 HOH A 115 915 223 HOH HOH . G 4 HOH A 116 916 254 HOH HOH . G 4 HOH A 117 917 196 HOH HOH . G 4 HOH A 118 918 229 HOH HOH . G 4 HOH A 119 919 233 HOH HOH . G 4 HOH A 120 920 198 HOH HOH . G 4 HOH A 121 921 257 HOH HOH . G 4 HOH A 122 922 113 HOH HOH . G 4 HOH A 123 923 216 HOH HOH . G 4 HOH A 124 924 189 HOH HOH . G 4 HOH A 125 925 240 HOH HOH . G 4 HOH A 126 926 96 HOH HOH . G 4 HOH A 127 927 175 HOH HOH . H 4 HOH B 1 801 4 HOH HOH . H 4 HOH B 2 802 124 HOH HOH . H 4 HOH B 3 803 9 HOH HOH . H 4 HOH B 4 804 208 HOH HOH . H 4 HOH B 5 805 2 HOH HOH . H 4 HOH B 6 806 151 HOH HOH . H 4 HOH B 7 807 120 HOH HOH . H 4 HOH B 8 808 251 HOH HOH . H 4 HOH B 9 809 30 HOH HOH . H 4 HOH B 10 810 224 HOH HOH . H 4 HOH B 11 811 91 HOH HOH . H 4 HOH B 12 812 182 HOH HOH . H 4 HOH B 13 813 59 HOH HOH . H 4 HOH B 14 814 129 HOH HOH . H 4 HOH B 15 815 133 HOH HOH . H 4 HOH B 16 816 57 HOH HOH . H 4 HOH B 17 817 74 HOH HOH . H 4 HOH B 18 818 8 HOH HOH . H 4 HOH B 19 819 65 HOH HOH . H 4 HOH B 20 820 7 HOH HOH . H 4 HOH B 21 821 105 HOH HOH . H 4 HOH B 22 822 13 HOH HOH . H 4 HOH B 23 823 18 HOH HOH . H 4 HOH B 24 824 202 HOH HOH . H 4 HOH B 25 825 132 HOH HOH . H 4 HOH B 26 826 98 HOH HOH . H 4 HOH B 27 827 99 HOH HOH . H 4 HOH B 28 828 32 HOH HOH . H 4 HOH B 29 829 115 HOH HOH . H 4 HOH B 30 830 121 HOH HOH . H 4 HOH B 31 831 11 HOH HOH . H 4 HOH B 32 832 15 HOH HOH . H 4 HOH B 33 833 71 HOH HOH . H 4 HOH B 34 834 29 HOH HOH . H 4 HOH B 35 835 85 HOH HOH . H 4 HOH B 36 836 66 HOH HOH . H 4 HOH B 37 837 33 HOH HOH . H 4 HOH B 38 838 186 HOH HOH . H 4 HOH B 39 839 142 HOH HOH . H 4 HOH B 40 840 236 HOH HOH . H 4 HOH B 41 841 75 HOH HOH . H 4 HOH B 42 842 53 HOH HOH . H 4 HOH B 43 843 58 HOH HOH . H 4 HOH B 44 844 242 HOH HOH . H 4 HOH B 45 845 194 HOH HOH . H 4 HOH B 46 846 63 HOH HOH . H 4 HOH B 47 847 26 HOH HOH . H 4 HOH B 48 848 106 HOH HOH . H 4 HOH B 49 849 16 HOH HOH . H 4 HOH B 50 850 86 HOH HOH . H 4 HOH B 51 851 34 HOH HOH . H 4 HOH B 52 852 114 HOH HOH . H 4 HOH B 53 853 38 HOH HOH . H 4 HOH B 54 854 82 HOH HOH . H 4 HOH B 55 855 27 HOH HOH . H 4 HOH B 56 856 84 HOH HOH . H 4 HOH B 57 857 12 HOH HOH . H 4 HOH B 58 858 119 HOH HOH . H 4 HOH B 59 859 192 HOH HOH . H 4 HOH B 60 860 161 HOH HOH . H 4 HOH B 61 861 55 HOH HOH . H 4 HOH B 62 862 77 HOH HOH . H 4 HOH B 63 863 152 HOH HOH . H 4 HOH B 64 864 127 HOH HOH . H 4 HOH B 65 865 54 HOH HOH . H 4 HOH B 66 866 87 HOH HOH . H 4 HOH B 67 867 171 HOH HOH . H 4 HOH B 68 868 204 HOH HOH . H 4 HOH B 69 869 138 HOH HOH . H 4 HOH B 70 870 193 HOH HOH . H 4 HOH B 71 871 40 HOH HOH . H 4 HOH B 72 872 222 HOH HOH . H 4 HOH B 73 873 107 HOH HOH . H 4 HOH B 74 874 17 HOH HOH . H 4 HOH B 75 875 5 HOH HOH . H 4 HOH B 76 876 69 HOH HOH . H 4 HOH B 77 877 137 HOH HOH . H 4 HOH B 78 878 249 HOH HOH . H 4 HOH B 79 879 225 HOH HOH . H 4 HOH B 80 880 97 HOH HOH . H 4 HOH B 81 881 217 HOH HOH . H 4 HOH B 82 882 160 HOH HOH . H 4 HOH B 83 883 201 HOH HOH . H 4 HOH B 84 884 190 HOH HOH . H 4 HOH B 85 885 211 HOH HOH . H 4 HOH B 86 886 206 HOH HOH . H 4 HOH B 87 887 195 HOH HOH . H 4 HOH B 88 888 72 HOH HOH . H 4 HOH B 89 889 179 HOH HOH . H 4 HOH B 90 890 41 HOH HOH . H 4 HOH B 91 891 134 HOH HOH . H 4 HOH B 92 892 146 HOH HOH . H 4 HOH B 93 893 221 HOH HOH . H 4 HOH B 94 894 110 HOH HOH . H 4 HOH B 95 895 230 HOH HOH . H 4 HOH B 96 896 227 HOH HOH . H 4 HOH B 97 897 181 HOH HOH . H 4 HOH B 98 898 209 HOH HOH . H 4 HOH B 99 899 170 HOH HOH . H 4 HOH B 100 900 78 HOH HOH . H 4 HOH B 101 901 56 HOH HOH . H 4 HOH B 102 902 136 HOH HOH . H 4 HOH B 103 903 147 HOH HOH . H 4 HOH B 104 904 247 HOH HOH . H 4 HOH B 105 905 67 HOH HOH . H 4 HOH B 106 906 252 HOH HOH . H 4 HOH B 107 907 197 HOH HOH . H 4 HOH B 108 908 184 HOH HOH . H 4 HOH B 109 909 52 HOH HOH . H 4 HOH B 110 910 125 HOH HOH . H 4 HOH B 111 911 130 HOH HOH . H 4 HOH B 112 912 205 HOH HOH . H 4 HOH B 113 913 253 HOH HOH . H 4 HOH B 114 914 153 HOH HOH . H 4 HOH B 115 915 220 HOH HOH . H 4 HOH B 116 916 167 HOH HOH . H 4 HOH B 117 917 159 HOH HOH . H 4 HOH B 118 918 255 HOH HOH . H 4 HOH B 119 919 122 HOH HOH . H 4 HOH B 120 920 232 HOH HOH . H 4 HOH B 121 921 180 HOH HOH . H 4 HOH B 122 922 248 HOH HOH . H 4 HOH B 123 923 231 HOH HOH . H 4 HOH B 124 924 214 HOH HOH . H 4 HOH B 125 925 234 HOH HOH . H 4 HOH B 126 926 126 HOH HOH . H 4 HOH B 127 927 256 HOH HOH . H 4 HOH B 128 928 250 HOH HOH . H 4 HOH B 129 929 212 HOH HOH . H 4 HOH B 130 930 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 61.842 61.448 67.446 1 44.42 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . C 2 60.516 62.019 67.628 1 29.53 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . C 2 61.623 60.018 66.684 1 55.57 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . C 2 60.607 59.221 67.26 1 48.37 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . C 2 62.95 59.185 66.675 1 52.95 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . C 2 62.53 57.938 66.045 1 42.6 ? O3 GOL 701 A 1 HETATM 7 H H11 GOL . . . C 2 62.429 62.013 66.92 1 53.25 ? H11 GOL 701 A 1 HETATM 8 H H12 GOL . . . C 2 62.292 61.308 68.294 1 53.25 ? H12 GOL 701 A 1 HETATM 9 H HO1 GOL . . . C 2 60.5 62.348 68.411 1 35.38 ? HO1 GOL 701 A 1 HETATM 10 H H2 GOL . . . C 2 61.332 60.177 65.772 1 66.63 ? H2 GOL 701 A 1 HETATM 11 H HO2 GOL . . . C 2 60.08 59.737 67.683 1 57.99 ? HO2 GOL 701 A 1 HETATM 12 H H31 GOL . . . C 2 63.645 59.667 66.2 1 63.48 ? H31 GOL 701 A 1 HETATM 13 H H32 GOL . . . C 2 63.274 59.059 67.581 1 63.48 ? H32 GOL 701 A 1 HETATM 14 H HO3 GOL . . . C 2 62.003 57.554 66.59 1 51.06 ? HO3 GOL 701 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 809 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #