data_6ECA # _model_server_result.job_id -coeFm6LFhZxiGTz7ZZENw _model_server_result.datetime_utc '2024-12-26 15:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 6ECA # _exptl.entry_id 6ECA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6ECA _cell.length_a 154.8 _cell.length_b 154.8 _cell.length_c 241.906 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 77.4 134.060733 201.588333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6ECA _atom_sites.fract_transf_matrix[1][1] 0.00646 _atom_sites.fract_transf_matrix[1][2] 0.00373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 701 2 GOL GOL . D 2 GOL B 1 701 1 GOL GOL . E 2 GOL B 1 702 3 GOL GOL . F 3 CL B 1 703 1 CL CL . G 4 HOH A 1 801 61 HOH HOH . G 4 HOH A 2 802 13 HOH HOH . G 4 HOH A 3 803 161 HOH HOH . G 4 HOH A 4 804 6 HOH HOH . G 4 HOH A 5 805 90 HOH HOH . G 4 HOH A 6 806 155 HOH HOH . G 4 HOH A 7 807 88 HOH HOH . G 4 HOH A 8 808 44 HOH HOH . G 4 HOH A 9 809 85 HOH HOH . G 4 HOH A 10 810 84 HOH HOH . G 4 HOH A 11 811 144 HOH HOH . G 4 HOH A 12 812 148 HOH HOH . G 4 HOH A 13 813 56 HOH HOH . G 4 HOH A 14 814 120 HOH HOH . G 4 HOH A 15 815 11 HOH HOH . G 4 HOH A 16 816 4 HOH HOH . G 4 HOH A 17 817 154 HOH HOH . G 4 HOH A 18 818 63 HOH HOH . G 4 HOH A 19 819 59 HOH HOH . G 4 HOH A 20 820 10 HOH HOH . G 4 HOH A 21 821 1 HOH HOH . G 4 HOH A 22 822 3 HOH HOH . G 4 HOH A 23 823 57 HOH HOH . G 4 HOH A 24 824 14 HOH HOH . G 4 HOH A 25 825 8 HOH HOH . G 4 HOH A 26 826 46 HOH HOH . G 4 HOH A 27 827 146 HOH HOH . G 4 HOH A 28 828 2 HOH HOH . G 4 HOH A 29 829 9 HOH HOH . G 4 HOH A 30 830 86 HOH HOH . G 4 HOH A 31 831 108 HOH HOH . G 4 HOH A 32 832 7 HOH HOH . G 4 HOH A 33 833 5 HOH HOH . G 4 HOH A 34 834 100 HOH HOH . G 4 HOH A 35 835 91 HOH HOH . G 4 HOH A 36 836 110 HOH HOH . G 4 HOH A 37 837 119 HOH HOH . G 4 HOH A 38 838 129 HOH HOH . G 4 HOH A 39 839 15 HOH HOH . G 4 HOH A 40 840 118 HOH HOH . G 4 HOH A 41 841 64 HOH HOH . G 4 HOH A 42 842 62 HOH HOH . G 4 HOH A 43 843 109 HOH HOH . G 4 HOH A 44 844 12 HOH HOH . G 4 HOH A 45 845 54 HOH HOH . G 4 HOH A 46 846 79 HOH HOH . G 4 HOH A 47 847 101 HOH HOH . G 4 HOH A 48 848 102 HOH HOH . G 4 HOH A 49 849 87 HOH HOH . G 4 HOH A 50 850 147 HOH HOH . G 4 HOH A 51 851 98 HOH HOH . G 4 HOH A 52 852 78 HOH HOH . G 4 HOH A 53 853 103 HOH HOH . G 4 HOH A 54 854 162 HOH HOH . G 4 HOH A 55 855 16 HOH HOH . G 4 HOH A 56 856 163 HOH HOH . G 4 HOH A 57 857 171 HOH HOH . G 4 HOH A 58 858 115 HOH HOH . G 4 HOH A 59 859 156 HOH HOH . G 4 HOH A 60 860 65 HOH HOH . G 4 HOH A 61 861 39 HOH HOH . G 4 HOH A 62 862 182 HOH HOH . G 4 HOH A 63 863 121 HOH HOH . G 4 HOH A 64 864 185 HOH HOH . G 4 HOH A 65 865 53 HOH HOH . G 4 HOH A 66 866 158 HOH HOH . G 4 HOH A 67 867 99 HOH HOH . G 4 HOH A 68 868 55 HOH HOH . G 4 HOH A 69 869 127 HOH HOH . G 4 HOH A 70 870 126 HOH HOH . G 4 HOH A 71 871 40 HOH HOH . G 4 HOH A 72 872 128 HOH HOH . G 4 HOH A 73 873 80 HOH HOH . G 4 HOH A 74 874 186 HOH HOH . G 4 HOH A 75 875 175 HOH HOH . G 4 HOH A 76 876 177 HOH HOH . G 4 HOH A 77 877 157 HOH HOH . G 4 HOH A 78 878 93 HOH HOH . G 4 HOH A 79 879 122 HOH HOH . G 4 HOH A 80 880 149 HOH HOH . G 4 HOH A 81 881 58 HOH HOH . G 4 HOH A 82 882 94 HOH HOH . G 4 HOH A 83 883 172 HOH HOH . G 4 HOH A 84 884 181 HOH HOH . G 4 HOH A 85 885 47 HOH HOH . G 4 HOH A 86 886 183 HOH HOH . G 4 HOH A 87 887 176 HOH HOH . G 4 HOH A 88 888 141 HOH HOH . G 4 HOH A 89 889 114 HOH HOH . G 4 HOH A 90 890 60 HOH HOH . G 4 HOH A 91 891 178 HOH HOH . G 4 HOH A 92 892 187 HOH HOH . H 4 HOH B 1 801 18 HOH HOH . H 4 HOH B 2 802 133 HOH HOH . H 4 HOH B 3 803 38 HOH HOH . H 4 HOH B 4 804 25 HOH HOH . H 4 HOH B 5 805 160 HOH HOH . H 4 HOH B 6 806 95 HOH HOH . H 4 HOH B 7 807 23 HOH HOH . H 4 HOH B 8 808 143 HOH HOH . H 4 HOH B 9 809 31 HOH HOH . H 4 HOH B 10 810 24 HOH HOH . H 4 HOH B 11 811 136 HOH HOH . H 4 HOH B 12 812 22 HOH HOH . H 4 HOH B 13 813 35 HOH HOH . H 4 HOH B 14 814 142 HOH HOH . H 4 HOH B 15 815 71 HOH HOH . H 4 HOH B 16 816 145 HOH HOH . H 4 HOH B 17 817 19 HOH HOH . H 4 HOH B 18 818 92 HOH HOH . H 4 HOH B 19 819 77 HOH HOH . H 4 HOH B 20 820 159 HOH HOH . H 4 HOH B 21 821 32 HOH HOH . H 4 HOH B 22 822 43 HOH HOH . H 4 HOH B 23 823 106 HOH HOH . H 4 HOH B 24 824 89 HOH HOH . H 4 HOH B 25 825 29 HOH HOH . H 4 HOH B 26 826 152 HOH HOH . H 4 HOH B 27 827 111 HOH HOH . H 4 HOH B 28 828 68 HOH HOH . H 4 HOH B 29 829 74 HOH HOH . H 4 HOH B 30 830 72 HOH HOH . H 4 HOH B 31 831 51 HOH HOH . H 4 HOH B 32 832 30 HOH HOH . H 4 HOH B 33 833 36 HOH HOH . H 4 HOH B 34 834 21 HOH HOH . H 4 HOH B 35 835 137 HOH HOH . H 4 HOH B 36 836 26 HOH HOH . H 4 HOH B 37 837 17 HOH HOH . H 4 HOH B 38 838 33 HOH HOH . H 4 HOH B 39 839 138 HOH HOH . H 4 HOH B 40 840 49 HOH HOH . H 4 HOH B 41 841 73 HOH HOH . H 4 HOH B 42 842 124 HOH HOH . H 4 HOH B 43 843 41 HOH HOH . H 4 HOH B 44 844 70 HOH HOH . H 4 HOH B 45 845 117 HOH HOH . H 4 HOH B 46 846 69 HOH HOH . H 4 HOH B 47 847 139 HOH HOH . H 4 HOH B 48 848 27 HOH HOH . H 4 HOH B 49 849 34 HOH HOH . H 4 HOH B 50 850 76 HOH HOH . H 4 HOH B 51 851 97 HOH HOH . H 4 HOH B 52 852 167 HOH HOH . H 4 HOH B 53 853 168 HOH HOH . H 4 HOH B 54 854 123 HOH HOH . H 4 HOH B 55 855 66 HOH HOH . H 4 HOH B 56 856 50 HOH HOH . H 4 HOH B 57 857 173 HOH HOH . H 4 HOH B 58 858 20 HOH HOH . H 4 HOH B 59 859 107 HOH HOH . H 4 HOH B 60 860 28 HOH HOH . H 4 HOH B 61 861 82 HOH HOH . H 4 HOH B 62 862 48 HOH HOH . H 4 HOH B 63 863 135 HOH HOH . H 4 HOH B 64 864 42 HOH HOH . H 4 HOH B 65 865 150 HOH HOH . H 4 HOH B 66 866 164 HOH HOH . H 4 HOH B 67 867 134 HOH HOH . H 4 HOH B 68 868 125 HOH HOH . H 4 HOH B 69 869 131 HOH HOH . H 4 HOH B 70 870 81 HOH HOH . H 4 HOH B 71 871 116 HOH HOH . H 4 HOH B 72 872 140 HOH HOH . H 4 HOH B 73 873 105 HOH HOH . H 4 HOH B 74 874 112 HOH HOH . H 4 HOH B 75 875 104 HOH HOH . H 4 HOH B 76 876 83 HOH HOH . H 4 HOH B 77 877 52 HOH HOH . H 4 HOH B 78 878 165 HOH HOH . H 4 HOH B 79 879 75 HOH HOH . H 4 HOH B 80 880 45 HOH HOH . H 4 HOH B 81 881 180 HOH HOH . H 4 HOH B 82 882 184 HOH HOH . H 4 HOH B 83 883 153 HOH HOH . H 4 HOH B 84 884 174 HOH HOH . H 4 HOH B 85 885 37 HOH HOH . H 4 HOH B 86 886 67 HOH HOH . H 4 HOH B 87 887 166 HOH HOH . H 4 HOH B 88 888 113 HOH HOH . H 4 HOH B 89 889 179 HOH HOH . H 4 HOH B 90 890 170 HOH HOH . H 4 HOH B 91 891 96 HOH HOH . H 4 HOH B 92 892 130 HOH HOH . H 4 HOH B 93 893 169 HOH HOH . H 4 HOH B 94 894 132 HOH HOH . H 4 HOH B 95 895 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 17.677 88.212 107.183 1 54.51 ? C1 GOL 702 B 1 HETATM 2 O O1 GOL . . . E 2 17.589 89.382 106.358 1 53.17 ? O1 GOL 702 B 1 HETATM 3 C C2 GOL . . . E 2 18.739 88.467 108.378 1 58.35 ? C2 GOL 702 B 1 HETATM 4 O O2 GOL . . . E 2 18.21 89.218 109.461 1 60.73 ? O2 GOL 702 B 1 HETATM 5 C C3 GOL . . . E 2 19.215 87.05 108.852 1 48.38 ? C3 GOL 702 B 1 HETATM 6 O O3 GOL . . . E 2 18.863 86.903 110.205 1 45.55 ? O3 GOL 702 B 1 HETATM 7 H H11 GOL . . . E 2 16.821 87.967 107.568 1 65.42 ? H11 GOL 702 B 1 HETATM 8 H H12 GOL . . . E 2 17.953 87.44 106.665 1 65.42 ? H12 GOL 702 B 1 HETATM 9 H HO1 GOL . . . E 2 16.936 89.256 105.829 1 63.8 ? HO1 GOL 702 B 1 HETATM 10 H H2 GOL . . . E 2 19.492 88.982 108.05 1 70.02 ? H2 GOL 702 B 1 HETATM 11 H HO2 GOL . . . E 2 17.824 88.677 109.99 1 72.88 ? HO2 GOL 702 B 1 HETATM 12 H H31 GOL . . . E 2 18.827 86.375 108.273 1 58.05 ? H31 GOL 702 B 1 HETATM 13 H H32 GOL . . . E 2 20.173 86.973 108.72 1 58.05 ? H32 GOL 702 B 1 HETATM 14 H HO3 GOL . . . E 2 18.676 86.081 110.321 1 54.66 ? HO3 GOL 702 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #