data_6ECP # _model_server_result.job_id c-owmhnaY8m_hnldz5k6ig _model_server_result.datetime_utc '2024-11-23 04:43:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ecp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6ECP # _exptl.entry_id 6ECP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ECP _cell.length_a 67.871 _cell.length_b 136.396 _cell.length_c 61.649 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id 21V _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5,10-dideazatetrahydrofolic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NA2 C2 21V sing 1 n n N3 C2 21V doub 2 n n N3 C4 21V sing 3 n n O4 C4 21V doub 4 n n C2 N1 21V sing 5 n n C4 C4A 21V sing 6 n n N1 C8A 21V sing 7 n n C4A C8A 21V doub 8 n n C4A C5 21V sing 9 n n C8A N8 21V sing 10 n n C5 C6 21V sing 11 n n N8 C7 21V sing 12 n n OE1 CD 21V doub 13 n n OE2 CD 21V sing 14 n n CD CG 21V sing 15 n n C6 C7 21V sing 16 n n C6 C9 21V sing 17 n n C9 C10 21V sing 18 n n CG CB 21V sing 19 n n C13 C12 21V doub 20 n y C13 C14 21V sing 21 n y CB CA 21V sing 22 n n C12 C11 21V sing 23 n y C10 C14 21V sing 24 n n C14 C15 21V doub 25 n y C11 C 21V sing 26 n n C11 C16 21V doub 27 n y C O 21V doub 28 n n C N 21V sing 29 n n C15 C16 21V sing 30 n y N CA 21V sing 31 n n CA CT 21V sing 32 n n O1 CT 21V doub 33 n n CT O2 21V sing 34 n n OE2 H1 21V sing 35 n n CG H2 21V sing 36 n n CG H3 21V sing 37 n n CB H4 21V sing 38 n n CB H5 21V sing 39 n n CA H6 21V sing 40 n n O2 H7 21V sing 41 n n N H8 21V sing 42 n n C12 H9 21V sing 43 n n C13 H10 21V sing 44 n n C16 H11 21V sing 45 n n C15 H12 21V sing 46 n n C10 H13 21V sing 47 n n C10 H14 21V sing 48 n n C9 H15 21V sing 49 n n C9 H16 21V sing 50 n n C6 H17 21V sing 51 n n C7 H18 21V sing 52 n n C7 H19 21V sing 53 n n C5 H20 21V sing 54 n n C5 H21 21V sing 55 n n NA2 H24 21V sing 56 n n NA2 H25 21V sing 57 n n N8 H26 21V sing 58 n n N1 H22 21V sing 59 n n # _atom_sites.entry_id 6ECP _atom_sites.fract_transf_matrix[1][1] 0.014734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 403 301 NAP NAP . D 3 21V A 1 401 401 21V L24 . E 3 21V A 1 402 402 21V L24 . F 2 NAP B 1 401 301 NAP NAP . G 4 HOH A 1 501 32 HOH HOH . G 4 HOH A 2 502 44 HOH HOH . G 4 HOH A 3 503 61 HOH HOH . G 4 HOH A 4 504 70 HOH HOH . G 4 HOH A 5 505 79 HOH HOH . G 4 HOH A 6 506 31 HOH HOH . G 4 HOH A 7 507 60 HOH HOH . G 4 HOH A 8 508 23 HOH HOH . G 4 HOH A 9 509 15 HOH HOH . G 4 HOH A 10 510 17 HOH HOH . G 4 HOH A 11 511 12 HOH HOH . G 4 HOH A 12 512 193 HOH HOH . G 4 HOH A 13 513 59 HOH HOH . G 4 HOH A 14 514 63 HOH HOH . G 4 HOH A 15 515 14 HOH HOH . G 4 HOH A 16 516 77 HOH HOH . G 4 HOH A 17 517 2 HOH HOH . G 4 HOH A 18 518 194 HOH HOH . G 4 HOH A 19 519 152 HOH HOH . G 4 HOH A 20 520 25 HOH HOH . G 4 HOH A 21 521 1 HOH HOH . G 4 HOH A 22 522 65 HOH HOH . G 4 HOH A 23 523 10 HOH HOH . G 4 HOH A 24 524 4 HOH HOH . G 4 HOH A 25 525 66 HOH HOH . G 4 HOH A 26 526 22 HOH HOH . G 4 HOH A 27 527 41 HOH HOH . G 4 HOH A 28 528 40 HOH HOH . G 4 HOH A 29 529 76 HOH HOH . G 4 HOH A 30 530 52 HOH HOH . G 4 HOH A 31 531 47 HOH HOH . G 4 HOH A 32 532 81 HOH HOH . G 4 HOH A 33 533 6 HOH HOH . G 4 HOH A 34 534 53 HOH HOH . G 4 HOH A 35 535 3 HOH HOH . G 4 HOH A 36 536 69 HOH HOH . G 4 HOH A 37 537 195 HOH HOH . G 4 HOH A 38 538 50 HOH HOH . G 4 HOH A 39 539 20 HOH HOH . G 4 HOH A 40 540 42 HOH HOH . G 4 HOH A 41 541 27 HOH HOH . G 4 HOH A 42 542 36 HOH HOH . G 4 HOH A 43 543 9 HOH HOH . G 4 HOH A 44 544 24 HOH HOH . G 4 HOH A 45 545 35 HOH HOH . G 4 HOH A 46 546 38 HOH HOH . G 4 HOH A 47 547 16 HOH HOH . G 4 HOH A 48 548 54 HOH HOH . G 4 HOH A 49 549 29 HOH HOH . G 4 HOH A 50 550 46 HOH HOH . G 4 HOH A 51 551 33 HOH HOH . G 4 HOH A 52 552 5 HOH HOH . G 4 HOH A 53 553 48 HOH HOH . G 4 HOH A 54 554 75 HOH HOH . G 4 HOH A 55 555 80 HOH HOH . G 4 HOH A 56 556 45 HOH HOH . G 4 HOH A 57 557 28 HOH HOH . G 4 HOH A 58 558 67 HOH HOH . G 4 HOH A 59 559 78 HOH HOH . G 4 HOH A 60 560 11 HOH HOH . G 4 HOH A 61 561 18 HOH HOH . G 4 HOH A 62 562 62 HOH HOH . G 4 HOH A 63 563 34 HOH HOH . G 4 HOH A 64 564 82 HOH HOH . G 4 HOH A 65 565 21 HOH HOH . G 4 HOH A 66 566 13 HOH HOH . G 4 HOH A 67 567 43 HOH HOH . G 4 HOH A 68 568 37 HOH HOH . G 4 HOH A 69 569 73 HOH HOH . G 4 HOH A 70 570 39 HOH HOH . G 4 HOH A 71 571 57 HOH HOH . G 4 HOH A 72 572 7 HOH HOH . G 4 HOH A 73 573 8 HOH HOH . G 4 HOH A 74 574 68 HOH HOH . G 4 HOH A 75 575 83 HOH HOH . G 4 HOH A 76 576 26 HOH HOH . G 4 HOH A 77 577 74 HOH HOH . G 4 HOH A 78 578 72 HOH HOH . G 4 HOH A 79 579 55 HOH HOH . G 4 HOH A 80 580 71 HOH HOH . G 4 HOH A 81 581 192 HOH HOH . G 4 HOH A 82 582 49 HOH HOH . G 4 HOH A 83 583 58 HOH HOH . G 4 HOH A 84 584 64 HOH HOH . G 4 HOH A 85 585 56 HOH HOH . G 4 HOH A 86 586 51 HOH HOH . G 4 HOH A 87 587 19 HOH HOH . H 4 HOH B 1 501 155 HOH HOH . H 4 HOH B 2 502 115 HOH HOH . H 4 HOH B 3 503 167 HOH HOH . H 4 HOH B 4 504 182 HOH HOH . H 4 HOH B 5 505 138 HOH HOH . H 4 HOH B 6 506 169 HOH HOH . H 4 HOH B 7 507 185 HOH HOH . H 4 HOH B 8 508 122 HOH HOH . H 4 HOH B 9 509 150 HOH HOH . H 4 HOH B 10 510 90 HOH HOH . H 4 HOH B 11 511 116 HOH HOH . H 4 HOH B 12 512 101 HOH HOH . H 4 HOH B 13 513 30 HOH HOH . H 4 HOH B 14 514 130 HOH HOH . H 4 HOH B 15 515 189 HOH HOH . H 4 HOH B 16 516 173 HOH HOH . H 4 HOH B 17 517 140 HOH HOH . H 4 HOH B 18 518 151 HOH HOH . H 4 HOH B 19 519 105 HOH HOH . H 4 HOH B 20 520 171 HOH HOH . H 4 HOH B 21 521 165 HOH HOH . H 4 HOH B 22 522 144 HOH HOH . H 4 HOH B 23 523 95 HOH HOH . H 4 HOH B 24 524 84 HOH HOH . H 4 HOH B 25 525 109 HOH HOH . H 4 HOH B 26 526 145 HOH HOH . H 4 HOH B 27 527 142 HOH HOH . H 4 HOH B 28 528 86 HOH HOH . H 4 HOH B 29 529 143 HOH HOH . H 4 HOH B 30 530 111 HOH HOH . H 4 HOH B 31 531 184 HOH HOH . H 4 HOH B 32 532 93 HOH HOH . H 4 HOH B 33 533 96 HOH HOH . H 4 HOH B 34 534 121 HOH HOH . H 4 HOH B 35 535 136 HOH HOH . H 4 HOH B 36 536 180 HOH HOH . H 4 HOH B 37 537 117 HOH HOH . H 4 HOH B 38 538 157 HOH HOH . H 4 HOH B 39 539 172 HOH HOH . H 4 HOH B 40 540 141 HOH HOH . H 4 HOH B 41 541 107 HOH HOH . H 4 HOH B 42 542 91 HOH HOH . H 4 HOH B 43 543 161 HOH HOH . H 4 HOH B 44 544 123 HOH HOH . H 4 HOH B 45 545 135 HOH HOH . H 4 HOH B 46 546 103 HOH HOH . H 4 HOH B 47 547 98 HOH HOH . H 4 HOH B 48 548 120 HOH HOH . H 4 HOH B 49 549 175 HOH HOH . H 4 HOH B 50 550 100 HOH HOH . H 4 HOH B 51 551 154 HOH HOH . H 4 HOH B 52 552 118 HOH HOH . H 4 HOH B 53 553 188 HOH HOH . H 4 HOH B 54 554 132 HOH HOH . H 4 HOH B 55 555 149 HOH HOH . H 4 HOH B 56 556 168 HOH HOH . H 4 HOH B 57 557 177 HOH HOH . H 4 HOH B 58 558 164 HOH HOH . H 4 HOH B 59 559 126 HOH HOH . H 4 HOH B 60 560 88 HOH HOH . H 4 HOH B 61 561 85 HOH HOH . H 4 HOH B 62 562 166 HOH HOH . H 4 HOH B 63 563 156 HOH HOH . H 4 HOH B 64 564 110 HOH HOH . H 4 HOH B 65 565 190 HOH HOH . H 4 HOH B 66 566 125 HOH HOH . H 4 HOH B 67 567 160 HOH HOH . H 4 HOH B 68 568 104 HOH HOH . H 4 HOH B 69 569 87 HOH HOH . H 4 HOH B 70 570 176 HOH HOH . H 4 HOH B 71 571 129 HOH HOH . H 4 HOH B 72 572 124 HOH HOH . H 4 HOH B 73 573 127 HOH HOH . H 4 HOH B 74 574 119 HOH HOH . H 4 HOH B 75 575 170 HOH HOH . H 4 HOH B 76 576 187 HOH HOH . H 4 HOH B 77 577 148 HOH HOH . H 4 HOH B 78 578 159 HOH HOH . H 4 HOH B 79 579 113 HOH HOH . H 4 HOH B 80 580 89 HOH HOH . H 4 HOH B 81 581 106 HOH HOH . H 4 HOH B 82 582 114 HOH HOH . H 4 HOH B 83 583 147 HOH HOH . H 4 HOH B 84 584 137 HOH HOH . H 4 HOH B 85 585 146 HOH HOH . H 4 HOH B 86 586 139 HOH HOH . H 4 HOH B 87 587 133 HOH HOH . H 4 HOH B 88 588 174 HOH HOH . H 4 HOH B 89 589 97 HOH HOH . H 4 HOH B 90 590 92 HOH HOH . H 4 HOH B 91 591 134 HOH HOH . H 4 HOH B 92 592 131 HOH HOH . H 4 HOH B 93 593 162 HOH HOH . H 4 HOH B 94 594 178 HOH HOH . H 4 HOH B 95 595 94 HOH HOH . H 4 HOH B 96 596 186 HOH HOH . H 4 HOH B 97 597 112 HOH HOH . H 4 HOH B 98 598 102 HOH HOH . H 4 HOH B 99 599 99 HOH HOH . H 4 HOH B 100 600 181 HOH HOH . H 4 HOH B 101 601 183 HOH HOH . H 4 HOH B 102 602 191 HOH HOH . H 4 HOH B 103 603 163 HOH HOH . H 4 HOH B 104 604 179 HOH HOH . H 4 HOH B 105 605 158 HOH HOH . H 4 HOH B 106 606 108 HOH HOH . H 4 HOH B 107 607 153 HOH HOH . H 4 HOH B 108 608 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OE2 21V . A . D 3 1.11 62.635 23.56 0.5 43.38 ? OE2 21V 401 A 1 HETATM 2 C CD 21V . A . D 3 2.272 62.518 23.972 0.5 43.42 ? CD 21V 401 A 1 HETATM 3 O OE1 21V . A . D 3 2.708 61.492 24.647 0.5 31.99 ? OE1 21V 401 A 1 HETATM 4 C CG 21V . A . D 3 3.354 63.545 23.777 0.5 46.06 ? CG 21V 401 A 1 HETATM 5 C CB 21V . A . D 3 3.166 64.481 22.587 0.5 48.46 ? CB 21V 401 A 1 HETATM 6 C CA 21V . A . D 3 4.413 64.503 21.71 0.5 49.02 ? CA 21V 401 A 1 HETATM 7 C CT 21V . A . D 3 5.572 65.167 22.443 0.5 49.8 ? CT 21V 401 A 1 HETATM 8 O O1 21V . A . D 3 5.616 65.29 23.674 0.5 42.21 ? O1 21V 401 A 1 HETATM 9 O O2 21V . A . D 3 6.513 65.597 21.61 0.5 47.41 ? O2 21V 401 A 1 HETATM 10 N N 21V . A . D 3 4.732 63.145 21.295 0.5 51.43 ? N 21V 401 A 1 HETATM 11 C C 21V . A . D 3 4.311 62.654 20.123 0.5 51.75 ? C 21V 401 A 1 HETATM 12 O O 21V . A . D 3 4.571 63.213 19.064 0.5 54.84 ? O 21V 401 A 1 HETATM 13 C C11 21V . A . D 3 3.507 61.392 20.153 0.5 51.51 ? C11 21V 401 A 1 HETATM 14 C C12 21V . A . D 3 2.21 61.338 20.649 0.5 53.16 ? C12 21V 401 A 1 HETATM 15 C C13 21V . A . D 3 1.485 60.159 20.602 0.5 53.56 ? C13 21V 401 A 1 HETATM 16 C C16 21V . A . D 3 4.055 60.232 19.62 0.5 51.46 ? C16 21V 401 A 1 HETATM 17 C C15 21V . A . D 3 3.324 59.058 19.574 0.5 52.73 ? C15 21V 401 A 1 HETATM 18 C C14 21V . A . D 3 2.03 59.002 20.061 0.5 52.84 ? C14 21V 401 A 1 HETATM 19 C C10 21V . A . D 3 1.236 57.716 19.998 0.5 53.79 ? C10 21V 401 A 1 HETATM 20 C C9 21V . A . D 3 1.548 56.835 18.777 0.5 53.4 ? C9 21V 401 A 1 HETATM 21 C C6 21V . A . D 3 0.794 55.488 18.83 0.5 53.82 ? C6 21V 401 A 1 HETATM 22 C C7 21V . A . D 3 0.507 54.971 17.421 0.5 51.11 ? C7 21V 401 A 1 HETATM 23 N N8 21V . A . D 3 -0.286 53.745 17.433 0.5 53.19 ? N8 21V 401 A 1 HETATM 24 C C5 21V . A . D 3 -0.496 55.519 19.657 0.5 54.64 ? C5 21V 401 A 1 HETATM 25 C C4A 21V . A . D 3 -1.402 54.333 19.434 0.5 55.5 ? C4A 21V 401 A 1 HETATM 26 C C4 21V . A . D 3 -2.455 54.027 20.378 0.5 55.47 ? C4 21V 401 A 1 HETATM 27 O O4 21V . A . D 3 -2.77 54.72 21.355 0.5 53.72 ? O4 21V 401 A 1 HETATM 28 C C8A 21V . A . D 3 -1.206 53.441 18.376 0.5 54.38 ? C8A 21V 401 A 1 HETATM 29 N N1 21V . A . D 3 -1.888 52.272 18.166 0.5 51.23 ? N1 21V 401 A 1 HETATM 30 C C2 21V . A . D 3 -2.828 52.006 19.079 0.5 50.99 ? C2 21V 401 A 1 HETATM 31 N N3 21V . A . D 3 -3.119 52.843 20.125 0.5 51.38 ? N3 21V 401 A 1 HETATM 32 N NA2 21V . A . D 3 -3.504 50.854 19.018 0.5 43.35 ? NA2 21V 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #