data_6ECQ # _model_server_result.job_id S9wj7xYKtxRf2E5bDb8VBQ _model_server_result.datetime_utc '2024-10-26 02:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ecq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6ECQ # _exptl.entry_id 6ECQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ECQ _cell.length_a 67.49 _cell.length_b 136.37 _cell.length_c 61.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 295 n n PA O2A NAP sing 296 n n PA O5B NAP sing 297 n n PA O3 NAP sing 298 n n O2A HOA2 NAP sing 299 n n O5B C5B NAP sing 300 n n C5B C4B NAP sing 301 n n C5B H51A NAP sing 302 n n C5B H52A NAP sing 303 n n C4B O4B NAP sing 304 n n C4B C3B NAP sing 305 n n C4B H4B NAP sing 306 n n O4B C1B NAP sing 307 n n C3B O3B NAP sing 308 n n C3B C2B NAP sing 309 n n C3B H3B NAP sing 310 n n O3B HO3A NAP sing 311 n n C2B O2B NAP sing 312 n n C2B C1B NAP sing 313 n n C2B H2B NAP sing 314 n n O2B P2B NAP sing 315 n n C1B N9A NAP sing 316 n n C1B H1B NAP sing 317 n n N9A C8A NAP sing 318 n y N9A C4A NAP sing 319 n y C8A N7A NAP doub 320 n y C8A H8A NAP sing 321 n n N7A C5A NAP sing 322 n y C5A C6A NAP sing 323 n y C5A C4A NAP doub 324 n y C6A N6A NAP sing 325 n n C6A N1A NAP doub 326 n y N6A H61A NAP sing 327 n n N6A H62A NAP sing 328 n n N1A C2A NAP sing 329 n y C2A N3A NAP doub 330 n y C2A H2A NAP sing 331 n n N3A C4A NAP sing 332 n y O3 PN NAP sing 333 n n PN O1N NAP doub 334 n n PN O2N NAP sing 335 n n PN O5D NAP sing 336 n n O5D C5D NAP sing 337 n n C5D C4D NAP sing 338 n n C5D H51N NAP sing 339 n n C5D H52N NAP sing 340 n n C4D O4D NAP sing 341 n n C4D C3D NAP sing 342 n n C4D H4D NAP sing 343 n n O4D C1D NAP sing 344 n n C3D O3D NAP sing 345 n n C3D C2D NAP sing 346 n n C3D H3D NAP sing 347 n n O3D HO3N NAP sing 348 n n C2D O2D NAP sing 349 n n C2D C1D NAP sing 350 n n C2D H2D NAP sing 351 n n O2D HO2N NAP sing 352 n n C1D N1N NAP sing 353 n n C1D H1D NAP sing 354 n n N1N C2N NAP sing 355 n y N1N C6N NAP doub 356 n y C2N C3N NAP doub 357 n y C2N H2N NAP sing 358 n n C3N C7N NAP sing 359 n n C3N C4N NAP sing 360 n y C7N O7N NAP doub 361 n n C7N N7N NAP sing 362 n n N7N H71N NAP sing 363 n n N7N H72N NAP sing 364 n n C4N C5N NAP doub 365 n y C4N H4N NAP sing 366 n n C5N C6N NAP sing 367 n y C5N H5N NAP sing 368 n n C6N H6N NAP sing 369 n n P2B O1X NAP doub 370 n n P2B O2X NAP sing 371 n n P2B O3X NAP sing 372 n n O2X HOP2 NAP sing 373 n n O3X HOP3 NAP sing 374 n n # _atom_sites.entry_id 6ECQ _atom_sites.fract_transf_matrix[1][1] 0.014817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 301 NAP NAP . D 3 LUD A 1 401 401 LUD L34 . E 2 NAP B 1 301 301 NAP NAP . F 4 HOH A 1 501 46 HOH HOH . F 4 HOH A 2 502 100 HOH HOH . F 4 HOH A 3 503 25 HOH HOH . F 4 HOH A 4 504 4 HOH HOH . F 4 HOH A 5 505 26 HOH HOH . F 4 HOH A 6 506 37 HOH HOH . F 4 HOH A 7 507 8 HOH HOH . F 4 HOH A 8 508 42 HOH HOH . F 4 HOH A 9 509 15 HOH HOH . F 4 HOH A 10 510 19 HOH HOH . F 4 HOH A 11 511 34 HOH HOH . F 4 HOH A 12 512 11 HOH HOH . F 4 HOH A 13 513 33 HOH HOH . F 4 HOH A 14 514 14 HOH HOH . F 4 HOH A 15 515 35 HOH HOH . F 4 HOH A 16 516 20 HOH HOH . F 4 HOH A 17 517 39 HOH HOH . F 4 HOH A 18 518 61 HOH HOH . F 4 HOH A 19 519 40 HOH HOH . F 4 HOH A 20 520 5 HOH HOH . F 4 HOH A 21 521 6 HOH HOH . F 4 HOH A 22 522 28 HOH HOH . F 4 HOH A 23 523 10 HOH HOH . F 4 HOH A 24 524 30 HOH HOH . F 4 HOH A 25 525 27 HOH HOH . F 4 HOH A 26 526 2 HOH HOH . F 4 HOH A 27 527 29 HOH HOH . F 4 HOH A 28 528 99 HOH HOH . F 4 HOH A 29 529 44 HOH HOH . F 4 HOH A 30 530 24 HOH HOH . F 4 HOH A 31 531 45 HOH HOH . F 4 HOH A 32 532 13 HOH HOH . F 4 HOH A 33 533 41 HOH HOH . F 4 HOH A 34 534 31 HOH HOH . F 4 HOH A 35 535 9 HOH HOH . F 4 HOH A 36 536 3 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 23 HOH HOH . F 4 HOH A 39 539 17 HOH HOH . F 4 HOH A 40 540 18 HOH HOH . F 4 HOH A 41 541 22 HOH HOH . F 4 HOH A 42 542 43 HOH HOH . F 4 HOH A 43 543 32 HOH HOH . F 4 HOH A 44 544 21 HOH HOH . G 4 HOH B 1 401 73 HOH HOH . G 4 HOH B 2 402 68 HOH HOH . G 4 HOH B 3 403 74 HOH HOH . G 4 HOH B 4 404 90 HOH HOH . G 4 HOH B 5 405 93 HOH HOH . G 4 HOH B 6 406 76 HOH HOH . G 4 HOH B 7 407 60 HOH HOH . G 4 HOH B 8 408 88 HOH HOH . G 4 HOH B 9 409 95 HOH HOH . G 4 HOH B 10 410 69 HOH HOH . G 4 HOH B 11 411 59 HOH HOH . G 4 HOH B 12 412 85 HOH HOH . G 4 HOH B 13 413 50 HOH HOH . G 4 HOH B 14 414 58 HOH HOH . G 4 HOH B 15 415 92 HOH HOH . G 4 HOH B 16 416 56 HOH HOH . G 4 HOH B 17 417 86 HOH HOH . G 4 HOH B 18 418 80 HOH HOH . G 4 HOH B 19 419 94 HOH HOH . G 4 HOH B 20 420 87 HOH HOH . G 4 HOH B 21 421 55 HOH HOH . G 4 HOH B 22 422 96 HOH HOH . G 4 HOH B 23 423 1 HOH HOH . G 4 HOH B 24 424 70 HOH HOH . G 4 HOH B 25 425 57 HOH HOH . G 4 HOH B 26 426 67 HOH HOH . G 4 HOH B 27 427 54 HOH HOH . G 4 HOH B 28 428 98 HOH HOH . G 4 HOH B 29 429 49 HOH HOH . G 4 HOH B 30 430 81 HOH HOH . G 4 HOH B 31 431 83 HOH HOH . G 4 HOH B 32 432 63 HOH HOH . G 4 HOH B 33 433 84 HOH HOH . G 4 HOH B 34 434 91 HOH HOH . G 4 HOH B 35 435 77 HOH HOH . G 4 HOH B 36 436 79 HOH HOH . G 4 HOH B 37 437 97 HOH HOH . G 4 HOH B 38 438 51 HOH HOH . G 4 HOH B 39 439 62 HOH HOH . G 4 HOH B 40 440 71 HOH HOH . G 4 HOH B 41 441 82 HOH HOH . G 4 HOH B 42 442 78 HOH HOH . G 4 HOH B 43 443 64 HOH HOH . G 4 HOH B 44 444 66 HOH HOH . G 4 HOH B 45 445 47 HOH HOH . G 4 HOH B 46 446 52 HOH HOH . G 4 HOH B 47 447 48 HOH HOH . G 4 HOH B 48 448 72 HOH HOH . G 4 HOH B 49 449 36 HOH HOH . G 4 HOH B 50 450 89 HOH HOH . G 4 HOH B 51 451 7 HOH HOH . G 4 HOH B 52 452 53 HOH HOH . G 4 HOH B 53 453 65 HOH HOH . G 4 HOH B 54 454 16 HOH HOH . G 4 HOH B 55 455 38 HOH HOH . G 4 HOH B 56 456 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -5.728 47.498 25.42 1 33.02 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 -5.596 46.511 24.322 1 32.19 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 -7.109 48.182 25.675 1 32.61 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 -5.438 46.614 26.734 1 28.13 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 -5.431 47.203 28.046 1 25.71 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 -4.918 46.202 29.054 1 24.08 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 -5.141 46.718 30.385 1 22.74 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 -5.57 44.809 29.008 1 22.57 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 -4.611 43.754 29.071 1 20.85 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 -6.467 44.791 30.24 1 21.73 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 -6.613 43.433 30.709 1 19.67 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 -5.731 45.722 31.195 1 22.45 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 -6.602 46.362 32.182 1 23.21 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 -7.798 46.99 31.954 1 23.08 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 -8.442 47.326 33.047 1 23.11 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 -7.606 46.894 34.067 1 23.03 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 -7.744 46.882 35.469 1 22.17 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 -8.812 47.344 36.107 1 22.13 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 -6.745 46.341 36.2 1 22.1 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 -5.682 45.847 35.564 1 22.78 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 -5.443 45.798 34.25 1 23.3 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 -6.455 46.327 33.55 1 23.38 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 -4.599 48.636 25.385 1 44.1 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . C 2 -3.067 48.997 25.017 1 55.37 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . C 2 -2.928 49.102 23.541 1 54.1 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . C 2 -2.119 48.118 25.747 1 47.8 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . C 2 -2.866 50.493 25.579 1 58.65 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . C 2 -3.335 50.954 26.87 1 68.75 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . C 2 -3.15 52.449 27.012 1 74.74 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . C 2 -1.893 52.842 26.419 1 78.07 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . C 2 -4.214 53.317 26.333 1 78.49 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . C 2 -4.402 54.556 27.013 1 79.53 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . C 2 -3.617 53.523 24.939 1 78.68 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . C 2 -4.104 54.705 24.309 1 74.91 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . C 2 -2.128 53.645 25.287 1 78.99 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . C 2 -1.141 53.191 24.151 1 76.73 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . C 2 -0.097 54.031 24.037 1 76.89 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . C 2 0.891 53.791 23.101 1 77.79 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . C 2 2.107 54.687 23.035 1 76.57 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . C 2 2.893 54.572 22.091 1 82.29 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . C 2 2.261 55.625 23.974 1 75.76 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . C 2 0.767 52.673 22.275 1 76.45 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . C 2 -0.318 51.822 22.414 1 76.04 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . C 2 -1.277 52.103 23.365 1 76.7 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . C 2 -7.491 42.334 29.905 1 17.56 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . C 2 -7.912 41.435 31.047 1 17.04 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . C 2 -8.643 42.998 29.151 1 17 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . C 2 -6.589 41.726 28.849 1 16.72 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #