data_6ECQ # _model_server_result.job_id F6BybZzF1CdejuSy7ywVOA _model_server_result.datetime_utc '2024-11-27 02:08:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ecq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6ECQ # _exptl.entry_id 6ECQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.423 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[(6aR)-3-amino-1,9-dioxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]benzene-1-carbonyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ECQ _cell.length_a 67.49 _cell.length_b 136.37 _cell.length_c 61.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 N7 O7' _chem_comp.formula_weight 471.423 _chem_comp.id LUD _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[(6aR)-3-amino-1,9-dioxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]benzene-1-carbonyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C LUD sing 194 n n C N1 LUD doub 195 n n C N6 LUD sing 196 n n N1 C1 LUD sing 197 n n N6 C19 LUD sing 198 n n C1 C2 LUD doub 199 n n C1 N3 LUD sing 200 n n C19 O6 LUD doub 201 n n C19 C2 LUD sing 202 n n O C6 LUD doub 203 n n C2 N2 LUD sing 204 n n N3 C4 LUD sing 205 n n C6 N2 LUD sing 206 n n C6 N4 LUD sing 207 n n N2 C3 LUD sing 208 n n C12 C11 LUD doub 209 n y C12 C7 LUD sing 210 n y C4 C3 LUD sing 211 n n C11 C10 LUD sing 212 n y N4 C7 LUD sing 213 n n N4 C5 LUD sing 214 n n C3 C5 LUD sing 215 n n C7 C8 LUD doub 216 n y O1 C13 LUD doub 217 n n C10 C13 LUD sing 218 n n C10 C9 LUD doub 219 n y C13 N5 LUD sing 220 n n C8 C9 LUD sing 221 n y N5 C14 LUD sing 222 n n O2 C17 LUD doub 223 n n C15 C14 LUD sing 224 n n C15 C16 LUD sing 225 n n C14 C18 LUD sing 226 n n C16 C17 LUD sing 227 n n C17 O3 LUD sing 228 n n C18 O5 LUD doub 229 n n C18 O4 LUD sing 230 n n C4 H2 LUD sing 231 n n C4 H3 LUD sing 232 n n N5 H4 LUD sing 233 n n C9 H5 LUD sing 234 n n N H6 LUD sing 235 n n N H7 LUD sing 236 n n N6 H8 LUD sing 237 n n C5 H9 LUD sing 238 n n C5 H10 LUD sing 239 n n C3 H11 LUD sing 240 n n C12 H12 LUD sing 241 n n C11 H13 LUD sing 242 n n C8 H14 LUD sing 243 n n C14 H15 LUD sing 244 n n O4 H16 LUD sing 245 n n C15 H17 LUD sing 246 n n C15 H18 LUD sing 247 n n C16 H19 LUD sing 248 n n C16 H20 LUD sing 249 n n O3 H21 LUD sing 250 n n N3 H1 LUD sing 251 n n # _atom_sites.entry_id 6ECQ _atom_sites.fract_transf_matrix[1][1] 0.014817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 301 NAP NAP . D 3 LUD A 1 401 401 LUD L34 . E 2 NAP B 1 301 301 NAP NAP . F 4 HOH A 1 501 46 HOH HOH . F 4 HOH A 2 502 100 HOH HOH . F 4 HOH A 3 503 25 HOH HOH . F 4 HOH A 4 504 4 HOH HOH . F 4 HOH A 5 505 26 HOH HOH . F 4 HOH A 6 506 37 HOH HOH . F 4 HOH A 7 507 8 HOH HOH . F 4 HOH A 8 508 42 HOH HOH . F 4 HOH A 9 509 15 HOH HOH . F 4 HOH A 10 510 19 HOH HOH . F 4 HOH A 11 511 34 HOH HOH . F 4 HOH A 12 512 11 HOH HOH . F 4 HOH A 13 513 33 HOH HOH . F 4 HOH A 14 514 14 HOH HOH . F 4 HOH A 15 515 35 HOH HOH . F 4 HOH A 16 516 20 HOH HOH . F 4 HOH A 17 517 39 HOH HOH . F 4 HOH A 18 518 61 HOH HOH . F 4 HOH A 19 519 40 HOH HOH . F 4 HOH A 20 520 5 HOH HOH . F 4 HOH A 21 521 6 HOH HOH . F 4 HOH A 22 522 28 HOH HOH . F 4 HOH A 23 523 10 HOH HOH . F 4 HOH A 24 524 30 HOH HOH . F 4 HOH A 25 525 27 HOH HOH . F 4 HOH A 26 526 2 HOH HOH . F 4 HOH A 27 527 29 HOH HOH . F 4 HOH A 28 528 99 HOH HOH . F 4 HOH A 29 529 44 HOH HOH . F 4 HOH A 30 530 24 HOH HOH . F 4 HOH A 31 531 45 HOH HOH . F 4 HOH A 32 532 13 HOH HOH . F 4 HOH A 33 533 41 HOH HOH . F 4 HOH A 34 534 31 HOH HOH . F 4 HOH A 35 535 9 HOH HOH . F 4 HOH A 36 536 3 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 23 HOH HOH . F 4 HOH A 39 539 17 HOH HOH . F 4 HOH A 40 540 18 HOH HOH . F 4 HOH A 41 541 22 HOH HOH . F 4 HOH A 42 542 43 HOH HOH . F 4 HOH A 43 543 32 HOH HOH . F 4 HOH A 44 544 21 HOH HOH . G 4 HOH B 1 401 73 HOH HOH . G 4 HOH B 2 402 68 HOH HOH . G 4 HOH B 3 403 74 HOH HOH . G 4 HOH B 4 404 90 HOH HOH . G 4 HOH B 5 405 93 HOH HOH . G 4 HOH B 6 406 76 HOH HOH . G 4 HOH B 7 407 60 HOH HOH . G 4 HOH B 8 408 88 HOH HOH . G 4 HOH B 9 409 95 HOH HOH . G 4 HOH B 10 410 69 HOH HOH . G 4 HOH B 11 411 59 HOH HOH . G 4 HOH B 12 412 85 HOH HOH . G 4 HOH B 13 413 50 HOH HOH . G 4 HOH B 14 414 58 HOH HOH . G 4 HOH B 15 415 92 HOH HOH . G 4 HOH B 16 416 56 HOH HOH . G 4 HOH B 17 417 86 HOH HOH . G 4 HOH B 18 418 80 HOH HOH . G 4 HOH B 19 419 94 HOH HOH . G 4 HOH B 20 420 87 HOH HOH . G 4 HOH B 21 421 55 HOH HOH . G 4 HOH B 22 422 96 HOH HOH . G 4 HOH B 23 423 1 HOH HOH . G 4 HOH B 24 424 70 HOH HOH . G 4 HOH B 25 425 57 HOH HOH . G 4 HOH B 26 426 67 HOH HOH . G 4 HOH B 27 427 54 HOH HOH . G 4 HOH B 28 428 98 HOH HOH . G 4 HOH B 29 429 49 HOH HOH . G 4 HOH B 30 430 81 HOH HOH . G 4 HOH B 31 431 83 HOH HOH . G 4 HOH B 32 432 63 HOH HOH . G 4 HOH B 33 433 84 HOH HOH . G 4 HOH B 34 434 91 HOH HOH . G 4 HOH B 35 435 77 HOH HOH . G 4 HOH B 36 436 79 HOH HOH . G 4 HOH B 37 437 97 HOH HOH . G 4 HOH B 38 438 51 HOH HOH . G 4 HOH B 39 439 62 HOH HOH . G 4 HOH B 40 440 71 HOH HOH . G 4 HOH B 41 441 82 HOH HOH . G 4 HOH B 42 442 78 HOH HOH . G 4 HOH B 43 443 64 HOH HOH . G 4 HOH B 44 444 66 HOH HOH . G 4 HOH B 45 445 47 HOH HOH . G 4 HOH B 46 446 52 HOH HOH . G 4 HOH B 47 447 48 HOH HOH . G 4 HOH B 48 448 72 HOH HOH . G 4 HOH B 49 449 36 HOH HOH . G 4 HOH B 50 450 89 HOH HOH . G 4 HOH B 51 451 7 HOH HOH . G 4 HOH B 52 452 53 HOH HOH . G 4 HOH B 53 453 65 HOH HOH . G 4 HOH B 54 454 16 HOH HOH . G 4 HOH B 55 455 38 HOH HOH . G 4 HOH B 56 456 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LUD . . . D 3 -1.058 50.838 15.985 1 49.62 ? N1 LUD 401 A 1 HETATM 2 C C2 LUD . . . D 3 0.387 52.339 17.312 1 53.81 ? C2 LUD 401 A 1 HETATM 3 N N3 LUD . . . D 3 -2.009 52.447 17.316 1 52.23 ? N3 LUD 401 A 1 HETATM 4 C C4 LUD . . . D 3 -2.055 53.523 18.305 1 52.8 ? C4 LUD 401 A 1 HETATM 5 N N5 LUD . . . D 3 2.345 61.467 21.07 1 49.8 ? N5 LUD 401 A 1 HETATM 6 C C6 LUD . . . D 3 1.234 54.609 18.002 1 53.03 ? C6 LUD 401 A 1 HETATM 7 C C7 LUD . . . D 3 1.373 56.822 19.214 1 52.63 ? C7 LUD 401 A 1 HETATM 8 C C9 LUD . . . D 3 1.683 58.668 20.748 1 49.83 ? C9 LUD 401 A 1 HETATM 9 N N LUD . . . D 3 -0.003 49.111 14.884 1 47.5 ? N LUD 401 A 1 HETATM 10 C C LUD . . . D 3 0.064 50.211 15.637 1 50.48 ? C LUD 401 A 1 HETATM 11 O O LUD . . . D 3 2.081 54.783 17.151 1 50.85 ? O LUD 401 A 1 HETATM 12 O O6 LUD . . . D 3 2.76 51.911 17.234 1 54.32 ? O6 LUD 401 A 1 HETATM 13 C C19 LUD . . . D 3 1.594 51.656 16.908 1 55.06 ? C19 LUD 401 A 1 HETATM 14 N N6 LUD . . . D 3 1.313 50.592 16.063 1 53.49 ? N6 LUD 401 A 1 HETATM 15 N N2 LUD . . . D 3 0.47 53.44 18.191 1 54.53 ? N2 LUD 401 A 1 HETATM 16 N N4 LUD . . . D 3 0.783 55.538 18.921 1 54.49 ? N4 LUD 401 A 1 HETATM 17 C C5 LUD . . . D 3 -0.375 55.03 19.662 1 55.56 ? C5 LUD 401 A 1 HETATM 18 C C3 LUD . . . D 3 -0.686 53.654 19.082 1 54.59 ? C3 LUD 401 A 1 HETATM 19 C C1 LUD . . . D 3 -0.877 51.88 16.839 1 51.91 ? C1 LUD 401 A 1 HETATM 20 C C12 LUD . . . D 3 2.1 57.535 18.252 1 52.6 ? C12 LUD 401 A 1 HETATM 21 C C11 LUD . . . D 3 2.604 58.795 18.54 1 51.49 ? C11 LUD 401 A 1 HETATM 22 C C10 LUD . . . D 3 2.393 59.387 19.788 1 48.56 ? C10 LUD 401 A 1 HETATM 23 C C8 LUD . . . D 3 1.185 57.405 20.469 1 50.3 ? C8 LUD 401 A 1 HETATM 24 C C13 LUD . . . D 3 2.905 60.772 20.065 1 47.56 ? C13 LUD 401 A 1 HETATM 25 O O1 LUD . . . D 3 3.816 61.252 19.397 1 45.32 ? O1 LUD 401 A 1 HETATM 26 C C14 LUD . . . D 3 3.156 61.989 22.166 1 49.07 ? C14 LUD 401 A 1 HETATM 27 C C18 LUD . . . D 3 2.537 61.742 23.535 1 47.2 ? C18 LUD 401 A 1 HETATM 28 O O5 LUD . . . D 3 1.628 60.947 23.718 1 45.15 ? O5 LUD 401 A 1 HETATM 29 O O4 LUD . . . D 3 3.134 62.423 24.492 1 43.26 ? O4 LUD 401 A 1 HETATM 30 C C15 LUD . . . D 3 3.557 63.467 21.974 1 48.82 ? C15 LUD 401 A 1 HETATM 31 C C16 LUD . . . D 3 5.007 63.706 22.441 1 49.81 ? C16 LUD 401 A 1 HETATM 32 C C17 LUD . . . D 3 5.605 65.083 22.503 1 50.96 ? C17 LUD 401 A 1 HETATM 33 O O3 LUD . . . D 3 5.621 65.755 23.526 1 49.14 ? O3 LUD 401 A 1 HETATM 34 O O2 LUD . . . D 3 6.199 65.447 21.381 1 51.24 ? O2 LUD 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 34 #