data_6ECX # _model_server_result.job_id 9I74GPnqn4XXsGkuOdo6XQ _model_server_result.datetime_utc '2024-10-19 10:18:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ecx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 6ECX # _exptl.entry_id 6ECX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ECX _cell.length_a 88.565 _cell.length_b 88.565 _cell.length_c 86.077 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 290 n n N HN1 SAM sing 291 n n N HN2 SAM sing 292 n n CA C SAM sing 293 n n CA CB SAM sing 294 n n CA HA SAM sing 295 n n C O SAM doub 296 n n C OXT SAM sing 297 n n CB CG SAM sing 298 n n CB HB1 SAM sing 299 n n CB HB2 SAM sing 300 n n CG SD SAM sing 301 n n CG HG1 SAM sing 302 n n CG HG2 SAM sing 303 n n SD CE SAM sing 304 n n SD C5' SAM sing 305 n n CE HE1 SAM sing 306 n n CE HE2 SAM sing 307 n n CE HE3 SAM sing 308 n n C5' C4' SAM sing 309 n n C5' "H5'1" SAM sing 310 n n C5' "H5'2" SAM sing 311 n n C4' O4' SAM sing 312 n n C4' C3' SAM sing 313 n n C4' H4' SAM sing 314 n n O4' C1' SAM sing 315 n n C3' O3' SAM sing 316 n n C3' C2' SAM sing 317 n n C3' H3' SAM sing 318 n n O3' HO3' SAM sing 319 n n C2' O2' SAM sing 320 n n C2' C1' SAM sing 321 n n C2' H2' SAM sing 322 n n O2' HO2' SAM sing 323 n n C1' N9 SAM sing 324 n n C1' H1' SAM sing 325 n n N9 C8 SAM sing 326 n y N9 C4 SAM sing 327 n y C8 N7 SAM doub 328 n y C8 H8 SAM sing 329 n n N7 C5 SAM sing 330 n y C5 C6 SAM sing 331 n y C5 C4 SAM doub 332 n y C6 N6 SAM sing 333 n n C6 N1 SAM doub 334 n y N6 HN61 SAM sing 335 n n N6 HN62 SAM sing 336 n n N1 C2 SAM sing 337 n y C2 N3 SAM doub 338 n y C2 H2 SAM sing 339 n n N3 C4 SAM sing 340 n y # _atom_sites.entry_id 6ECX _atom_sites.fract_transf_matrix[1][1] 0.011291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 1301 1400 SAM SAM . C 3 GOL A 1 1302 1 GOL GOL . D 3 GOL A 1 1303 2 GOL GOL . E 3 GOL A 1 1304 3 GOL GOL . F 3 GOL A 1 1305 4 GOL GOL . G 4 HOH A 1 1401 146 HOH HOH . G 4 HOH A 2 1402 112 HOH HOH . G 4 HOH A 3 1403 96 HOH HOH . G 4 HOH A 4 1404 6 HOH HOH . G 4 HOH A 5 1405 12 HOH HOH . G 4 HOH A 6 1406 26 HOH HOH . G 4 HOH A 7 1407 75 HOH HOH . G 4 HOH A 8 1408 18 HOH HOH . G 4 HOH A 9 1409 94 HOH HOH . G 4 HOH A 10 1410 61 HOH HOH . G 4 HOH A 11 1411 74 HOH HOH . G 4 HOH A 12 1412 101 HOH HOH . G 4 HOH A 13 1413 119 HOH HOH . G 4 HOH A 14 1414 65 HOH HOH . G 4 HOH A 15 1415 68 HOH HOH . G 4 HOH A 16 1416 45 HOH HOH . G 4 HOH A 17 1417 31 HOH HOH . G 4 HOH A 18 1418 63 HOH HOH . G 4 HOH A 19 1419 16 HOH HOH . G 4 HOH A 20 1420 128 HOH HOH . G 4 HOH A 21 1421 5 HOH HOH . G 4 HOH A 22 1422 7 HOH HOH . G 4 HOH A 23 1423 43 HOH HOH . G 4 HOH A 24 1424 11 HOH HOH . G 4 HOH A 25 1425 77 HOH HOH . G 4 HOH A 26 1426 92 HOH HOH . G 4 HOH A 27 1427 81 HOH HOH . G 4 HOH A 28 1428 145 HOH HOH . G 4 HOH A 29 1429 57 HOH HOH . G 4 HOH A 30 1430 33 HOH HOH . G 4 HOH A 31 1431 44 HOH HOH . G 4 HOH A 32 1432 42 HOH HOH . G 4 HOH A 33 1433 17 HOH HOH . G 4 HOH A 34 1434 29 HOH HOH . G 4 HOH A 35 1435 9 HOH HOH . G 4 HOH A 36 1436 85 HOH HOH . G 4 HOH A 37 1437 110 HOH HOH . G 4 HOH A 38 1438 3 HOH HOH . G 4 HOH A 39 1439 19 HOH HOH . G 4 HOH A 40 1440 13 HOH HOH . G 4 HOH A 41 1441 38 HOH HOH . G 4 HOH A 42 1442 20 HOH HOH . G 4 HOH A 43 1443 30 HOH HOH . G 4 HOH A 44 1444 47 HOH HOH . G 4 HOH A 45 1445 23 HOH HOH . G 4 HOH A 46 1446 15 HOH HOH . G 4 HOH A 47 1447 66 HOH HOH . G 4 HOH A 48 1448 4 HOH HOH . G 4 HOH A 49 1449 144 HOH HOH . G 4 HOH A 50 1450 27 HOH HOH . G 4 HOH A 51 1451 107 HOH HOH . G 4 HOH A 52 1452 76 HOH HOH . G 4 HOH A 53 1453 22 HOH HOH . G 4 HOH A 54 1454 10 HOH HOH . G 4 HOH A 55 1455 106 HOH HOH . G 4 HOH A 56 1456 37 HOH HOH . G 4 HOH A 57 1457 53 HOH HOH . G 4 HOH A 58 1458 64 HOH HOH . G 4 HOH A 59 1459 8 HOH HOH . G 4 HOH A 60 1460 2 HOH HOH . G 4 HOH A 61 1461 84 HOH HOH . G 4 HOH A 62 1462 105 HOH HOH . G 4 HOH A 63 1463 115 HOH HOH . G 4 HOH A 64 1464 86 HOH HOH . G 4 HOH A 65 1465 113 HOH HOH . G 4 HOH A 66 1466 99 HOH HOH . G 4 HOH A 67 1467 35 HOH HOH . G 4 HOH A 68 1468 36 HOH HOH . G 4 HOH A 69 1469 72 HOH HOH . G 4 HOH A 70 1470 67 HOH HOH . G 4 HOH A 71 1471 51 HOH HOH . G 4 HOH A 72 1472 120 HOH HOH . G 4 HOH A 73 1473 95 HOH HOH . G 4 HOH A 74 1474 139 HOH HOH . G 4 HOH A 75 1475 14 HOH HOH . G 4 HOH A 76 1476 41 HOH HOH . G 4 HOH A 77 1477 1 HOH HOH . G 4 HOH A 78 1478 143 HOH HOH . G 4 HOH A 79 1479 59 HOH HOH . G 4 HOH A 80 1480 89 HOH HOH . G 4 HOH A 81 1481 108 HOH HOH . G 4 HOH A 82 1482 48 HOH HOH . G 4 HOH A 83 1483 117 HOH HOH . G 4 HOH A 84 1484 52 HOH HOH . G 4 HOH A 85 1485 54 HOH HOH . G 4 HOH A 86 1486 50 HOH HOH . G 4 HOH A 87 1487 39 HOH HOH . G 4 HOH A 88 1488 40 HOH HOH . G 4 HOH A 89 1489 109 HOH HOH . G 4 HOH A 90 1490 32 HOH HOH . G 4 HOH A 91 1491 130 HOH HOH . G 4 HOH A 92 1492 103 HOH HOH . G 4 HOH A 93 1493 116 HOH HOH . G 4 HOH A 94 1494 124 HOH HOH . G 4 HOH A 95 1495 102 HOH HOH . G 4 HOH A 96 1496 70 HOH HOH . G 4 HOH A 97 1497 118 HOH HOH . G 4 HOH A 98 1498 25 HOH HOH . G 4 HOH A 99 1499 24 HOH HOH . G 4 HOH A 100 1500 78 HOH HOH . G 4 HOH A 101 1501 28 HOH HOH . G 4 HOH A 102 1502 133 HOH HOH . G 4 HOH A 103 1503 55 HOH HOH . G 4 HOH A 104 1504 79 HOH HOH . G 4 HOH A 105 1505 71 HOH HOH . G 4 HOH A 106 1506 104 HOH HOH . G 4 HOH A 107 1507 135 HOH HOH . G 4 HOH A 108 1508 21 HOH HOH . G 4 HOH A 109 1509 62 HOH HOH . G 4 HOH A 110 1510 142 HOH HOH . G 4 HOH A 111 1511 140 HOH HOH . G 4 HOH A 112 1512 98 HOH HOH . G 4 HOH A 113 1513 123 HOH HOH . G 4 HOH A 114 1514 83 HOH HOH . G 4 HOH A 115 1515 100 HOH HOH . G 4 HOH A 116 1516 91 HOH HOH . G 4 HOH A 117 1517 73 HOH HOH . G 4 HOH A 118 1518 49 HOH HOH . G 4 HOH A 119 1519 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -13.63 -24.59 -22.689 1 59.92 ? N SAM 1301 A 1 HETATM 2 C CA SAM . . . B 2 -13.058 -25.303 -23.824 1 68.71 ? CA SAM 1301 A 1 HETATM 3 C C SAM . . . B 2 -11.542 -25.382 -23.707 1 81.7 ? C SAM 1301 A 1 HETATM 4 O O SAM . . . B 2 -10.969 -24.675 -22.883 1 85.24 ? O SAM 1301 A 1 HETATM 5 O OXT SAM . . . B 2 -10.862 -26.138 -24.408 1 81.46 ? OXT SAM 1301 A 1 HETATM 6 C CB SAM . . . B 2 -13.454 -24.621 -25.122 1 64.93 ? CB SAM 1301 A 1 HETATM 7 C CG SAM . . . B 2 -13.192 -23.121 -25.157 1 64.36 ? CG SAM 1301 A 1 HETATM 8 S SD SAM . . . B 2 -13.511 -22.471 -26.819 1 60.79 ? SD SAM 1301 A 1 HETATM 9 C CE SAM . . . B 2 -12.327 -21.101 -26.883 1 61.22 ? CE SAM 1301 A 1 HETATM 10 C C5' SAM . . . B 2 -15.145 -21.711 -26.642 1 41.71 ? C5' SAM 1301 A 1 HETATM 11 C C4' SAM . . . B 2 -16.264 -22.744 -26.488 1 51.82 ? C4' SAM 1301 A 1 HETATM 12 O O4' SAM . . . B 2 -17.484 -22.159 -26.057 1 50.78 ? O4' SAM 1301 A 1 HETATM 13 C C3' SAM . . . B 2 -16.613 -23.518 -27.755 1 63.24 ? C3' SAM 1301 A 1 HETATM 14 O O3' SAM . . . B 2 -16.706 -24.877 -27.366 1 57.42 ? O3' SAM 1301 A 1 HETATM 15 C C2' SAM . . . B 2 -18 -23.024 -28.146 1 60.11 ? C2' SAM 1301 A 1 HETATM 16 O O2' SAM . . . B 2 -18.803 -23.991 -28.794 1 55.81 ? O2' SAM 1301 A 1 HETATM 17 C C1' SAM . . . B 2 -18.577 -22.701 -26.775 1 53.35 ? C1' SAM 1301 A 1 HETATM 18 N N9 SAM . . . B 2 -19.706 -21.75 -26.754 1 52.12 ? N9 SAM 1301 A 1 HETATM 19 C C8 SAM . . . B 2 -19.707 -20.474 -27.263 1 52.72 ? C8 SAM 1301 A 1 HETATM 20 N N7 SAM . . . B 2 -20.917 -19.912 -27.01 1 48.68 ? N7 SAM 1301 A 1 HETATM 21 C C5 SAM . . . B 2 -21.693 -20.807 -26.358 1 44.03 ? C5 SAM 1301 A 1 HETATM 22 C C6 SAM . . . B 2 -22.987 -20.757 -25.873 1 45.29 ? C6 SAM 1301 A 1 HETATM 23 N N6 SAM . . . B 2 -23.732 -19.662 -26.019 1 54.74 ? N6 SAM 1301 A 1 HETATM 24 N N1 SAM . . . B 2 -23.524 -21.857 -25.223 1 56.71 ? N1 SAM 1301 A 1 HETATM 25 C C2 SAM . . . B 2 -22.773 -22.996 -25.049 1 46.87 ? C2 SAM 1301 A 1 HETATM 26 N N3 SAM . . . B 2 -21.483 -23.033 -25.534 1 48.39 ? N3 SAM 1301 A 1 HETATM 27 C C4 SAM . . . B 2 -20.944 -21.967 -26.183 1 50.01 ? C4 SAM 1301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #