data_6ECZ # _model_server_result.job_id 9i34cfDmyRHCOvzMSjwlUg _model_server_result.datetime_utc '2024-11-21 18:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ecz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6ECZ # _exptl.entry_id 6ECZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 472.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[2-hydroxy-3-nitro-5-(nitrosulfonyl)phenyl]-N'-(pentafluorophenyl)urea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.45 _cell.angle_gamma 90 _cell.entry_id 6ECZ _cell.length_a 42.88 _cell.length_b 41.884 _cell.length_c 72.905 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ECZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N29 J4D . A J4D 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? # _chem_comp.formula 'C13 H5 F5 N4 O8 S' _chem_comp.formula_weight 472.258 _chem_comp.id J4D _chem_comp.mon_nstd_flag . _chem_comp.name "N-[2-hydroxy-3-nitro-5-(nitrosulfonyl)phenyl]-N'-(pentafluorophenyl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 N23 J4D doub 173 n n F19 C16 J4D sing 174 n n O07 C03 J4D sing 175 n n N23 O25 J4D sing 176 n n N23 C02 J4D sing 177 n n F18 C17 J4D sing 178 n n C16 C17 J4D doub 179 n y C16 C15 J4D sing 180 n y C17 C12 J4D sing 181 n y F20 C15 J4D sing 182 n n C15 C14 J4D doub 183 n y C03 C02 J4D doub 184 n y C03 C04 J4D sing 185 n y C02 C01 J4D sing 186 n y C12 N10 J4D sing 187 n n C12 C13 J4D doub 188 n y N10 C09 J4D sing 189 n n O11 C09 J4D doub 190 n n C09 N08 J4D sing 191 n n C14 C13 J4D sing 192 n y C14 F21 J4D sing 193 n n N08 C04 J4D sing 194 n n C13 F22 J4D sing 195 n n C04 C05 J4D doub 196 n y C01 C06 J4D doub 197 n y C05 C06 J4D sing 198 n y C06 S26 J4D sing 199 n n N29 S26 J4D sing 200 n n S26 O27 J4D doub 201 n n S26 O28 J4D doub 202 n n C01 H1 J4D sing 203 n n C05 H2 J4D sing 204 n n O07 H3 J4D sing 205 n n N08 H4 J4D sing 206 n n N10 H5 J4D sing 207 n n N29 O1 J4D doub 208 n n N29 O2 J4D sing 209 n n # _atom_sites.entry_id 6ECZ _atom_sites.fract_transf_matrix[1][1] 0.023321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00601 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 J4D A 1 302 1 J4D LIG . D 4 HOH A 1 401 12 HOH HOH . D 4 HOH A 2 402 16 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 17 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 11 HOH HOH . D 4 HOH A 7 407 18 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 4 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 10 HOH HOH . D 4 HOH A 13 413 2 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 13 HOH HOH . D 4 HOH A 16 416 7 HOH HOH . D 4 HOH A 17 417 15 HOH HOH . D 4 HOH A 18 418 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 J4D . . . C 3 -0.951 8.63 13.693 1 88.51 ? C13 J4D 302 A 1 HETATM 2 C C15 J4D . . . C 3 1.153 8.184 12.549 1 101.17 ? C15 J4D 302 A 1 HETATM 3 C C17 J4D . . . C 3 -0.781 6.798 12.14 1 99.75 ? C17 J4D 302 A 1 HETATM 4 C C01 J4D . . . C 3 -4.986 1.161 13.865 1 57.62 ? C01 J4D 302 A 1 HETATM 5 C C02 J4D . . . C 3 -4.725 1.752 12.645 1 67.49 ? C02 J4D 302 A 1 HETATM 6 C C03 J4D . . . C 3 -4.65 3.138 12.585 1 57.25 ? C03 J4D 302 A 1 HETATM 7 C C04 J4D . . . C 3 -4.846 3.917 13.736 1 54.11 ? C04 J4D 302 A 1 HETATM 8 C C05 J4D . . . C 3 -5.114 3.309 14.955 1 48.91 ? C05 J4D 302 A 1 HETATM 9 C C06 J4D . . . C 3 -5.183 1.923 15.003 1 47.77 ? C06 J4D 302 A 1 HETATM 10 O O07 J4D . . . C 3 -4.375 3.743 11.355 1 57.38 ? O07 J4D 302 A 1 HETATM 11 N N08 J4D . . . C 3 -4.735 5.362 13.628 1 60.52 ? N08 J4D 302 A 1 HETATM 12 C C09 J4D . . . C 3 -3.359 5.801 13.427 1 76.19 ? C09 J4D 302 A 1 HETATM 13 N N10 J4D . . . C 3 -2.952 7.197 13.272 1 80.17 ? N10 J4D 302 A 1 HETATM 14 O O11 J4D . . . C 3 -2.527 4.953 13.387 1 80.84 ? O11 J4D 302 A 1 HETATM 15 C C12 J4D . . . C 3 -1.546 7.547 13.047 1 88.26 ? C12 J4D 302 A 1 HETATM 16 C C14 J4D . . . C 3 0.39 8.948 13.449 1 99.13 ? C14 J4D 302 A 1 HETATM 17 C C16 J4D . . . C 3 0.558 7.101 11.895 1 103.16 ? C16 J4D 302 A 1 HETATM 18 F F18 J4D . . . C 3 -1.325 5.727 11.481 1 101.98 ? F18 J4D 302 A 1 HETATM 19 F F19 J4D . . . C 3 1.272 6.328 11.007 1 101.89 ? F19 J4D 302 A 1 HETATM 20 F F20 J4D . . . C 3 2.476 8.489 12.308 1 96.08 ? F20 J4D 302 A 1 HETATM 21 F F21 J4D . . . C 3 0.954 10.017 14.103 1 102.4 ? F21 J4D 302 A 1 HETATM 22 F F22 J4D . . . C 3 -1.67 9.386 14.574 1 81.1 ? F22 J4D 302 A 1 HETATM 23 N N23 J4D . . . C 3 -4.547 0.881 11.476 1 73.13 ? N23 J4D 302 A 1 HETATM 24 O O24 J4D . . . C 3 -4.872 1.233 10.396 1 66.82 ? O24 J4D 302 A 1 HETATM 25 O O25 J4D . . . C 3 -4.017 -0.413 11.65 1 70.01 ? O25 J4D 302 A 1 HETATM 26 S S26 J4D . . . C 3 -5.545 1.011 16.524 1 38.66 ? S26 J4D 302 A 1 HETATM 27 O O27 J4D . . . C 3 -6.917 1.262 16.939 1 35.99 ? O27 J4D 302 A 1 HETATM 28 O O28 J4D . . . C 3 -4.752 1.45 17.671 1 47.5 ? O28 J4D 302 A 1 HETATM 29 N N29 J4D . . . C 3 -5.339 -0.657 16.238 1 37.09 ? N29 J4D 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #