data_6EDG # _model_server_result.job_id 6r6_ClR1ex-AbYcRpzPHCQ _model_server_result.datetime_utc '2024-11-14 15:56:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6edg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6EDG # _exptl.entry_id 6EDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EDG _cell.length_a 38.373 _cell.length_b 48.188 _cell.length_c 99.002 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 N3 O2' _chem_comp.formula_weight 295.336 _chem_comp.id P34 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA N P34 sing 205 n n CAA HAA1 P34 sing 206 n n CAA HAA2 P34 sing 207 n n CAA HAA3 P34 sing 208 n n N CAB P34 sing 209 n n N CA P34 sing 210 n n CAB HAB1 P34 sing 211 n n CAB HAB2 P34 sing 212 n n CAB HAB3 P34 sing 213 n n CA C P34 sing 214 n n CA HA1 P34 sing 215 n n CA HA2 P34 sing 216 n n C O P34 doub 217 n n C NAM P34 sing 218 n n NAM CAP P34 sing 219 n n NAM HAM P34 sing 220 n n CAP CAK P34 sing 221 n y CAP CAG P34 doub 222 n y CAK CAU P34 doub 223 n y CAK HAK P34 sing 224 n n CAU CAT P34 sing 225 n y CAU CAR P34 sing 226 n y CAT CAI P34 sing 227 n y CAT CAS P34 doub 228 n y CAI CAF P34 doub 229 n y CAI HAI P34 sing 230 n n CAF CAE P34 sing 231 n y CAF HAF P34 sing 232 n n CAE CAH P34 doub 233 n y CAE HAE P34 sing 234 n n CAH CAS P34 sing 235 n y CAH HAH P34 sing 236 n n CAS CAQ P34 sing 237 n y CAQ OAD P34 doub 238 n n CAQ NAN P34 sing 239 n y NAN CAR P34 sing 240 n y NAN HAN P34 sing 241 n n CAR CAJ P34 doub 242 n y CAJ CAG P34 sing 243 n y CAJ HAJ P34 sing 244 n n CAG HAG P34 sing 245 n n # _atom_sites.entry_id 6EDG _atom_sites.fract_transf_matrix[1][1] 0.02606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P34 A 1 1001 1001 P34 P34 . C 3 HOH A 1 1101 54 HOH HOH . C 3 HOH A 2 1102 11 HOH HOH . C 3 HOH A 3 1103 34 HOH HOH . C 3 HOH A 4 1104 16 HOH HOH . C 3 HOH A 5 1105 44 HOH HOH . C 3 HOH A 6 1106 36 HOH HOH . C 3 HOH A 7 1107 60 HOH HOH . C 3 HOH A 8 1108 22 HOH HOH . C 3 HOH A 9 1109 25 HOH HOH . C 3 HOH A 10 1110 31 HOH HOH . C 3 HOH A 11 1111 7 HOH HOH . C 3 HOH A 12 1112 17 HOH HOH . C 3 HOH A 13 1113 9 HOH HOH . C 3 HOH A 14 1114 15 HOH HOH . C 3 HOH A 15 1115 28 HOH HOH . C 3 HOH A 16 1116 50 HOH HOH . C 3 HOH A 17 1117 52 HOH HOH . C 3 HOH A 18 1118 40 HOH HOH . C 3 HOH A 19 1119 45 HOH HOH . C 3 HOH A 20 1120 57 HOH HOH . C 3 HOH A 21 1121 19 HOH HOH . C 3 HOH A 22 1122 35 HOH HOH . C 3 HOH A 23 1123 42 HOH HOH . C 3 HOH A 24 1124 14 HOH HOH . C 3 HOH A 25 1125 13 HOH HOH . C 3 HOH A 26 1126 53 HOH HOH . C 3 HOH A 27 1127 12 HOH HOH . C 3 HOH A 28 1128 3 HOH HOH . C 3 HOH A 29 1129 6 HOH HOH . C 3 HOH A 30 1130 8 HOH HOH . C 3 HOH A 31 1131 59 HOH HOH . C 3 HOH A 32 1132 1 HOH HOH . C 3 HOH A 33 1133 26 HOH HOH . C 3 HOH A 34 1134 37 HOH HOH . C 3 HOH A 35 1135 55 HOH HOH . C 3 HOH A 36 1136 49 HOH HOH . C 3 HOH A 37 1137 47 HOH HOH . C 3 HOH A 38 1138 10 HOH HOH . C 3 HOH A 39 1139 4 HOH HOH . C 3 HOH A 40 1140 51 HOH HOH . C 3 HOH A 41 1141 39 HOH HOH . C 3 HOH A 42 1142 48 HOH HOH . C 3 HOH A 43 1143 21 HOH HOH . C 3 HOH A 44 1144 2 HOH HOH . C 3 HOH A 45 1145 20 HOH HOH . C 3 HOH A 46 1146 38 HOH HOH . C 3 HOH A 47 1147 56 HOH HOH . C 3 HOH A 48 1148 27 HOH HOH . C 3 HOH A 49 1149 46 HOH HOH . C 3 HOH A 50 1150 24 HOH HOH . C 3 HOH A 51 1151 62 HOH HOH . C 3 HOH A 52 1152 43 HOH HOH . C 3 HOH A 53 1153 58 HOH HOH . C 3 HOH A 54 1154 29 HOH HOH . C 3 HOH A 55 1155 5 HOH HOH . C 3 HOH A 56 1156 32 HOH HOH . C 3 HOH A 57 1157 18 HOH HOH . C 3 HOH A 58 1158 30 HOH HOH . C 3 HOH A 59 1159 41 HOH HOH . C 3 HOH A 60 1160 61 HOH HOH . C 3 HOH A 61 1161 33 HOH HOH . C 3 HOH A 62 1162 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA P34 . . . B 2 -22.129 -3.923 -6.076 1 84.5 ? CAA P34 1001 A 1 HETATM 2 N N P34 . . . B 2 -21.577 -3.553 -7.406 1 93.23 ? N P34 1001 A 1 HETATM 3 C CAB P34 . . . B 2 -21.048 -4.748 -8.125 1 86.43 ? CAB P34 1001 A 1 HETATM 4 C CA P34 . . . B 2 -22.523 -2.703 -8.225 1 87.5 ? CA P34 1001 A 1 HETATM 5 C C P34 . . . B 2 -22.451 -1.198 -7.888 1 84.14 ? C P34 1001 A 1 HETATM 6 O O P34 . . . B 2 -23.345 -0.861 -7.105 1 89.66 ? O P34 1001 A 1 HETATM 7 N NAM P34 . . . B 2 -21.526 -0.227 -8.27 1 66.84 ? NAM P34 1001 A 1 HETATM 8 C CAP P34 . . . B 2 -20.285 -0.449 -8.775 1 52.86 ? CAP P34 1001 A 1 HETATM 9 C CAK P34 . . . B 2 -19.168 0.204 -8.164 1 36.76 ? CAK P34 1001 A 1 HETATM 10 C CAU P34 . . . B 2 -17.836 -0.168 -8.567 1 32.69 ? CAU P34 1001 A 1 HETATM 11 C CAT P34 . . . B 2 -16.603 0.422 -7.998 1 29.75 ? CAT P34 1001 A 1 HETATM 12 C CAI P34 . . . B 2 -16.579 1.435 -7.024 1 33.6 ? CAI P34 1001 A 1 HETATM 13 C CAF P34 . . . B 2 -15.348 1.982 -6.634 1 29.9 ? CAF P34 1001 A 1 HETATM 14 C CAE P34 . . . B 2 -14.132 1.533 -7.166 1 29.4 ? CAE P34 1001 A 1 HETATM 15 C CAH P34 . . . B 2 -14.125 0.513 -8.082 1 26.85 ? CAH P34 1001 A 1 HETATM 16 C CAS P34 . . . B 2 -15.382 -0.024 -8.524 1 26.33 ? CAS P34 1001 A 1 HETATM 17 C CAQ P34 . . . B 2 -15.362 -1.035 -9.605 1 28.56 ? CAQ P34 1001 A 1 HETATM 18 O OAD P34 . . . B 2 -14.253 -1.436 -9.902 1 24.47 ? OAD P34 1001 A 1 HETATM 19 N NAN P34 . . . B 2 -16.451 -1.69 -9.994 1 27.01 ? NAN P34 1001 A 1 HETATM 20 C CAR P34 . . . B 2 -17.665 -1.218 -9.625 1 36.74 ? CAR P34 1001 A 1 HETATM 21 C CAJ P34 . . . B 2 -18.807 -1.854 -10.155 1 42.38 ? CAJ P34 1001 A 1 HETATM 22 C CAG P34 . . . B 2 -20.079 -1.47 -9.726 1 50.27 ? CAG P34 1001 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #