data_6EDK # _model_server_result.job_id Amy_09C-0f5DR2dTjiqSXg _model_server_result.datetime_utc '2024-11-29 02:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6edk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6EDK # _exptl.entry_id 6EDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.9 _cell.angle_gamma 90 _cell.entry_id 6EDK _cell.length_a 97.2 _cell.length_b 77.3 _cell.length_c 40.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 264 n n O1 C6 MES sing 265 n n C2 C3 MES sing 266 n n C2 H21 MES sing 267 n n C2 H22 MES sing 268 n n C3 N4 MES sing 269 n n C3 H31 MES sing 270 n n C3 H32 MES sing 271 n n N4 C5 MES sing 272 n n N4 C7 MES sing 273 n n N4 HN4 MES sing 274 n n C5 C6 MES sing 275 n n C5 H51 MES sing 276 n n C5 H52 MES sing 277 n n C6 H61 MES sing 278 n n C6 H62 MES sing 279 n n C7 C8 MES sing 280 n n C7 H71 MES sing 281 n n C7 H72 MES sing 282 n n C8 S MES sing 283 n n C8 H81 MES sing 284 n n C8 H82 MES sing 285 n n S O1S MES doub 286 n n S O2S MES doub 287 n n S O3S MES sing 288 n n # _atom_sites.entry_id 6EDK _atom_sites.fract_transf_matrix[1][1] 0.010288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 301 448 MES MES . C 3 SO4 A 1 302 450 SO4 SO4 . D 4 1YA A 1 303 451 1YA 1YA . E 5 HOH A 1 401 447 HOH HOH . E 5 HOH A 2 402 292 HOH HOH . E 5 HOH A 3 403 328 HOH HOH . E 5 HOH A 4 404 441 HOH HOH . E 5 HOH A 5 405 446 HOH HOH . E 5 HOH A 6 406 252 HOH HOH . E 5 HOH A 7 407 273 HOH HOH . E 5 HOH A 8 408 282 HOH HOH . E 5 HOH A 9 409 356 HOH HOH . E 5 HOH A 10 410 336 HOH HOH . E 5 HOH A 11 411 327 HOH HOH . E 5 HOH A 12 412 226 HOH HOH . E 5 HOH A 13 413 230 HOH HOH . E 5 HOH A 14 414 254 HOH HOH . E 5 HOH A 15 415 241 HOH HOH . E 5 HOH A 16 416 233 HOH HOH . E 5 HOH A 17 417 223 HOH HOH . E 5 HOH A 18 418 250 HOH HOH . E 5 HOH A 19 419 229 HOH HOH . E 5 HOH A 20 420 294 HOH HOH . E 5 HOH A 21 421 247 HOH HOH . E 5 HOH A 22 422 280 HOH HOH . E 5 HOH A 23 423 440 HOH HOH . E 5 HOH A 24 424 295 HOH HOH . E 5 HOH A 25 425 362 HOH HOH . E 5 HOH A 26 426 269 HOH HOH . E 5 HOH A 27 427 246 HOH HOH . E 5 HOH A 28 428 216 HOH HOH . E 5 HOH A 29 429 219 HOH HOH . E 5 HOH A 30 430 231 HOH HOH . E 5 HOH A 31 431 300 HOH HOH . E 5 HOH A 32 432 215 HOH HOH . E 5 HOH A 33 433 359 HOH HOH . E 5 HOH A 34 434 412 HOH HOH . E 5 HOH A 35 435 222 HOH HOH . E 5 HOH A 36 436 249 HOH HOH . E 5 HOH A 37 437 439 HOH HOH . E 5 HOH A 38 438 271 HOH HOH . E 5 HOH A 39 439 217 HOH HOH . E 5 HOH A 40 440 225 HOH HOH . E 5 HOH A 41 441 259 HOH HOH . E 5 HOH A 42 442 239 HOH HOH . E 5 HOH A 43 443 276 HOH HOH . E 5 HOH A 44 444 236 HOH HOH . E 5 HOH A 45 445 265 HOH HOH . E 5 HOH A 46 446 386 HOH HOH . E 5 HOH A 47 447 232 HOH HOH . E 5 HOH A 48 448 224 HOH HOH . E 5 HOH A 49 449 264 HOH HOH . E 5 HOH A 50 450 245 HOH HOH . E 5 HOH A 51 451 306 HOH HOH . E 5 HOH A 52 452 235 HOH HOH . E 5 HOH A 53 453 286 HOH HOH . E 5 HOH A 54 454 270 HOH HOH . E 5 HOH A 55 455 285 HOH HOH . E 5 HOH A 56 456 299 HOH HOH . E 5 HOH A 57 457 297 HOH HOH . E 5 HOH A 58 458 289 HOH HOH . E 5 HOH A 59 459 220 HOH HOH . E 5 HOH A 60 460 340 HOH HOH . E 5 HOH A 61 461 290 HOH HOH . E 5 HOH A 62 462 354 HOH HOH . E 5 HOH A 63 463 365 HOH HOH . E 5 HOH A 64 464 329 HOH HOH . E 5 HOH A 65 465 262 HOH HOH . E 5 HOH A 66 466 261 HOH HOH . E 5 HOH A 67 467 267 HOH HOH . E 5 HOH A 68 468 263 HOH HOH . E 5 HOH A 69 469 313 HOH HOH . E 5 HOH A 70 470 255 HOH HOH . E 5 HOH A 71 471 442 HOH HOH . E 5 HOH A 72 472 266 HOH HOH . E 5 HOH A 73 473 248 HOH HOH . E 5 HOH A 74 474 293 HOH HOH . E 5 HOH A 75 475 298 HOH HOH . E 5 HOH A 76 476 234 HOH HOH . E 5 HOH A 77 477 218 HOH HOH . E 5 HOH A 78 478 238 HOH HOH . E 5 HOH A 79 479 431 HOH HOH . E 5 HOH A 80 480 382 HOH HOH . E 5 HOH A 81 481 221 HOH HOH . E 5 HOH A 82 482 418 HOH HOH . E 5 HOH A 83 483 228 HOH HOH . E 5 HOH A 84 484 278 HOH HOH . E 5 HOH A 85 485 318 HOH HOH . E 5 HOH A 86 486 415 HOH HOH . E 5 HOH A 87 487 284 HOH HOH . E 5 HOH A 88 488 287 HOH HOH . E 5 HOH A 89 489 411 HOH HOH . E 5 HOH A 90 490 303 HOH HOH . E 5 HOH A 91 491 240 HOH HOH . E 5 HOH A 92 492 445 HOH HOH . E 5 HOH A 93 493 443 HOH HOH . E 5 HOH A 94 494 244 HOH HOH . E 5 HOH A 95 495 253 HOH HOH . E 5 HOH A 96 496 337 HOH HOH . E 5 HOH A 97 497 348 HOH HOH . E 5 HOH A 98 498 321 HOH HOH . E 5 HOH A 99 499 437 HOH HOH . E 5 HOH A 100 500 438 HOH HOH . E 5 HOH A 101 501 319 HOH HOH . E 5 HOH A 102 502 436 HOH HOH . E 5 HOH A 103 503 305 HOH HOH . E 5 HOH A 104 504 268 HOH HOH . E 5 HOH A 105 505 444 HOH HOH . E 5 HOH A 106 506 398 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . B 2 30.622 35.353 1.191 1 55.55 ? O1 MES 301 A 1 HETATM 2 C C2 MES . . . B 2 30.082 34.529 2.228 1 57.93 ? C2 MES 301 A 1 HETATM 3 C C3 MES . . . B 2 31.184 33.954 3.141 1 57.82 ? C3 MES 301 A 1 HETATM 4 N N4 MES . . . B 2 32.17 33.282 2.301 1 53.37 ? N4 MES 301 A 1 HETATM 5 C C5 MES . . . B 2 32.707 34.109 1.218 1 52.49 ? C5 MES 301 A 1 HETATM 6 C C6 MES . . . B 2 31.549 34.652 0.376 1 55.38 ? C6 MES 301 A 1 HETATM 7 C C7 MES . . . B 2 33.316 32.669 3.038 1 51.96 ? C7 MES 301 A 1 HETATM 8 C C8 MES . . . B 2 32.894 31.509 3.942 1 47.71 ? C8 MES 301 A 1 HETATM 9 S S MES . . . B 2 34.312 30.672 4.552 1 41.43 ? S MES 301 A 1 HETATM 10 O O1S MES . . . B 2 34.524 29.41 3.894 1 45.06 ? O1S MES 301 A 1 HETATM 11 O O2S MES . . . B 2 35.471 31.594 4.256 1 34.77 ? O2S MES 301 A 1 HETATM 12 O O3S MES . . . B 2 34.043 30.445 5.94 1 33.76 ? O3S MES 301 A 1 HETATM 13 H H21 MES . . . B 2 29.388 35.118 2.831 1 69.57 ? H21 MES 301 A 1 HETATM 14 H H22 MES . . . B 2 29.522 33.706 1.779 1 69.57 ? H22 MES 301 A 1 HETATM 15 H H31 MES . . . B 2 30.752 33.247 3.853 1 69.43 ? H31 MES 301 A 1 HETATM 16 H H32 MES . . . B 2 31.658 34.756 3.71 1 69.43 ? H32 MES 301 A 1 HETATM 17 H HN4 MES . . . B 2 31.616 32.539 1.902 1 64.09 ? HN4 MES 301 A 1 HETATM 18 H H51 MES . . . B 2 33.285 34.938 1.634 1 63.03 ? H51 MES 301 A 1 HETATM 19 H H52 MES . . . B 2 33.376 33.515 0.592 1 63.03 ? H52 MES 301 A 1 HETATM 20 H H61 MES . . . B 2 31.938 35.321 -0.394 1 66.51 ? H61 MES 301 A 1 HETATM 21 H H62 MES . . . B 2 31.042 33.824 -0.124 1 66.51 ? H62 MES 301 A 1 HETATM 22 H H71 MES . . . B 2 33.798 33.437 3.647 1 62.41 ? H71 MES 301 A 1 HETATM 23 H H72 MES . . . B 2 34.049 32.306 2.314 1 62.41 ? H72 MES 301 A 1 HETATM 24 H H81 MES . . . B 2 32.269 30.813 3.38 1 57.3 ? H81 MES 301 A 1 HETATM 25 H H82 MES . . . B 2 32.304 31.89 4.778 1 57.3 ? H82 MES 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #