data_6EDS # _model_server_result.job_id 2OnD0Zea2tFDmWCzSVjcUQ _model_server_result.datetime_utc '2024-12-23 16:29:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 6EDS # _exptl.entry_id 6EDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.649 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "{(8R,9S,10S)-9-(2',3'-dimethyl[1,1'-biphenyl]-4-yl)-6-[(1-methyl-1H-imidazol-2-yl)sulfonyl]-1,6-diazabicyclo[6.2.0]decan-10-yl}methanol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EDS _cell.length_a 263.119 _cell.length_b 263.119 _cell.length_c 90.322 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # _chem_comp.formula 'C27 H34 N4 O3 S' _chem_comp.formula_weight 494.649 _chem_comp.id J22 _chem_comp.mon_nstd_flag . _chem_comp.name "{(8R,9S,10S)-9-(2',3'-dimethyl[1,1'-biphenyl]-4-yl)-6-[(1-methyl-1H-imidazol-2-yl)sulfonyl]-1,6-diazabicyclo[6.2.0]decan-10-yl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 S02 J22 doub 218 n n C06 C05 J22 doub 219 n y C06 N07 J22 sing 220 n y C05 N04 J22 sing 221 n y C08 N07 J22 sing 222 n n N07 C03 J22 sing 223 n y N04 C03 J22 doub 224 n y C03 S02 J22 sing 225 n n S02 O01 J22 doub 226 n n S02 N09 J22 sing 227 n n C13 C12 J22 sing 228 n n C13 C14 J22 sing 229 n n C12 N09 J22 sing 230 n n N09 C10 J22 sing 231 n n C14 C15 J22 sing 232 n n C10 C11 J22 sing 233 n n C15 N16 J22 sing 234 n n C11 N16 J22 sing 235 n n C11 C20 J22 sing 236 n n N16 C17 J22 sing 237 n n C34 C33 J22 doub 238 n y C34 C21 J22 sing 239 n y C33 C24 J22 sing 240 n y C20 C21 J22 sing 241 n n C20 C17 J22 sing 242 n n C32 C31 J22 doub 243 n y C32 C25 J22 sing 244 n y C21 C22 J22 doub 245 n y C31 C30 J22 sing 246 n y C17 C18 J22 sing 247 n n C24 C25 J22 sing 248 n n C24 C23 J22 doub 249 n y C25 C26 J22 doub 250 n y C22 C23 J22 sing 251 n y C30 C28 J22 doub 252 n y C18 O19 J22 sing 253 n n C26 C28 J22 sing 254 n y C26 C27 J22 sing 255 n n C28 C29 J22 sing 256 n n C05 H051 J22 sing 257 n n C06 H061 J22 sing 258 n n C08 H083 J22 sing 259 n n C08 H081 J22 sing 260 n n C08 H082 J22 sing 261 n n C10 H102 J22 sing 262 n n C10 H101 J22 sing 263 n n C11 H111 J22 sing 264 n n C12 H121 J22 sing 265 n n C12 H122 J22 sing 266 n n C13 H132 J22 sing 267 n n C13 H131 J22 sing 268 n n C14 H142 J22 sing 269 n n C14 H141 J22 sing 270 n n C15 H151 J22 sing 271 n n C15 H152 J22 sing 272 n n C17 H171 J22 sing 273 n n C18 H181 J22 sing 274 n n C18 H182 J22 sing 275 n n C20 H201 J22 sing 276 n n C22 H221 J22 sing 277 n n C23 H231 J22 sing 278 n n C27 H273 J22 sing 279 n n C27 H272 J22 sing 280 n n C27 H271 J22 sing 281 n n C29 H292 J22 sing 282 n n C29 H291 J22 sing 283 n n C29 H293 J22 sing 284 n n C30 H301 J22 sing 285 n n C31 H311 J22 sing 286 n n C32 H321 J22 sing 287 n n C33 H331 J22 sing 288 n n C34 H341 J22 sing 289 n n O19 H191 J22 sing 290 n n # _atom_sites.entry_id 6EDS _atom_sites.fract_transf_matrix[1][1] 0.003801 _atom_sites.fract_transf_matrix[1][2] 0.002194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J22 A 1 1101 1 J22 J22 . F 4 EPE A 1 1102 1102 EPE EPE . G 5 PEG A 1 1103 1103 PEG PEG . H 6 DIO A 1 1104 1104 DIO DIO . I 4 EPE B 1 1101 1102 EPE EPE . J 5 PEG B 1 1102 1103 PEG PEG . K 6 DIO B 1 1103 1104 DIO DIO . L 3 J22 B 1 1104 1 J22 J22 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 J22 . . . E 3 100.266 -69.272 -29.756 0.86 58.89 ? C03 J22 1101 A 1 HETATM 2 C C05 J22 . . . E 3 99.862 -71.258 -28.786 0.86 58.27 ? C05 J22 1101 A 1 HETATM 3 C C06 J22 . . . E 3 101.166 -71.298 -29.341 0.86 56.48 ? C06 J22 1101 A 1 HETATM 4 C C08 J22 . . . E 3 102.614 -69.653 -30.634 0.86 60.75 ? C08 J22 1101 A 1 HETATM 5 C C10 J22 . . . E 3 97.28 -67.662 -30.335 0.86 59.93 ? C10 J22 1101 A 1 HETATM 6 C C11 J22 . . . E 3 96.252 -66.744 -31.12 0.86 56.92 ? C11 J22 1101 A 1 HETATM 7 C C12 J22 . . . E 3 98.432 -66.064 -28.755 0.86 59.37 ? C12 J22 1101 A 1 HETATM 8 C C13 J22 . . . E 3 97.848 -64.685 -29.207 0.86 63.33 ? C13 J22 1101 A 1 HETATM 9 C C14 J22 . . . E 3 96.366 -64.433 -28.798 0.86 63.95 ? C14 J22 1101 A 1 HETATM 10 C C15 J22 . . . E 3 95.492 -65.722 -28.914 0.86 62.53 ? C15 J22 1101 A 1 HETATM 11 C C17 J22 . . . E 3 94.065 -66.709 -31.043 0.86 54.97 ? C17 J22 1101 A 1 HETATM 12 C C18 J22 . . . E 3 93.141 -67.566 -30.149 0.86 53.97 ? C18 J22 1101 A 1 HETATM 13 C C20 J22 . . . E 3 95.131 -67.548 -31.817 0.86 55.11 ? C20 J22 1101 A 1 HETATM 14 C C21 J22 . . . E 3 95.024 -67.431 -33.348 0.86 49.89 ? C21 J22 1101 A 1 HETATM 15 C C22 J22 . . . E 3 94.78 -68.596 -34.087 0.86 49.72 ? C22 J22 1101 A 1 HETATM 16 C C23 J22 . . . E 3 94.658 -68.539 -35.485 0.86 47.86 ? C23 J22 1101 A 1 HETATM 17 C C24 J22 . . . E 3 94.769 -67.323 -36.201 0.86 45.52 ? C24 J22 1101 A 1 HETATM 18 C C25 J22 . . . E 3 94.624 -67.352 -37.626 0.86 50.18 ? C25 J22 1101 A 1 HETATM 19 C C26 J22 . . . E 3 93.386 -67.082 -38.277 0.86 46.12 ? C26 J22 1101 A 1 HETATM 20 C C27 J22 . . . E 3 92.172 -66.692 -37.441 0.86 42.87 ? C27 J22 1101 A 1 HETATM 21 C C28 J22 . . . E 3 93.295 -67.154 -39.679 0.86 50.33 ? C28 J22 1101 A 1 HETATM 22 C C29 J22 . . . E 3 91.987 -66.852 -40.365 0.86 48.82 ? C29 J22 1101 A 1 HETATM 23 C C30 J22 . . . E 3 94.436 -67.513 -40.442 0.86 56.61 ? C30 J22 1101 A 1 HETATM 24 C C31 J22 . . . E 3 95.68 -67.803 -39.813 0.86 59.09 ? C31 J22 1101 A 1 HETATM 25 C C32 J22 . . . E 3 95.757 -67.726 -38.406 0.86 57.73 ? C32 J22 1101 A 1 HETATM 26 C C33 J22 . . . E 3 95.006 -66.14 -35.445 0.86 43.29 ? C33 J22 1101 A 1 HETATM 27 C C34 J22 . . . E 3 95.128 -66.195 -34.031 0.86 46.2 ? C34 J22 1101 A 1 HETATM 28 N N04 J22 . . . E 3 99.332 -69.985 -29.066 0.86 58.13 ? N04 J22 1101 A 1 HETATM 29 N N07 J22 . . . E 3 101.367 -70.062 -29.922 0.86 56.65 ? N07 J22 1101 A 1 HETATM 30 N N09 J22 . . . E 3 98.572 -67.009 -29.896 0.86 62.25 ? N09 J22 1101 A 1 HETATM 31 N N16 J22 . . . E 3 95.146 -65.994 -30.326 0.86 57 ? N16 J22 1101 A 1 HETATM 32 O O01 J22 . . . E 3 100.243 -67.499 -31.793 0.86 70.32 ? O01 J22 1101 A 1 HETATM 33 O O19 J22 . . . E 3 92.93 -68.83 -30.872 0.86 60.9 ? O19 J22 1101 A 1 HETATM 34 O O35 J22 . . . E 3 101.122 -66.752 -29.824 0.86 65.42 ? O35 J22 1101 A 1 HETATM 35 S S02 J22 . . . E 3 100.054 -67.566 -30.348 0.86 66.42 ? S02 J22 1101 A 1 HETATM 36 H H051 J22 . . . E 3 99.405 -71.92 -28.321 0.86 69.93 ? H051 J22 1101 A 1 HETATM 37 H H061 J22 . . . E 3 101.755 -72.016 -29.312 0.86 67.78 ? H061 J22 1101 A 1 HETATM 38 H H083 J22 . . . E 3 103.236 -70.349 -30.733 0.86 72.9 ? H083 J22 1101 A 1 HETATM 39 H H081 J22 . . . E 3 103.048 -68.952 -30.185 0.86 72.9 ? H081 J22 1101 A 1 HETATM 40 H H082 J22 . . . E 3 102.417 -69.336 -31.496 0.86 72.9 ? H082 J22 1101 A 1 HETATM 41 H H102 J22 . . . E 3 96.813 -68.064 -29.626 0.86 71.92 ? H102 J22 1101 A 1 HETATM 42 H H101 J22 . . . E 3 97.462 -68.4 -30.886 0.86 71.92 ? H101 J22 1101 A 1 HETATM 43 H H111 J22 . . . E 3 96.676 -66.148 -31.709 0.86 68.3 ? H111 J22 1101 A 1 HETATM 44 H H121 J22 . . . E 3 97.874 -66.386 -28.072 0.86 71.24 ? H121 J22 1101 A 1 HETATM 45 H H122 J22 . . . E 3 99.261 -65.953 -28.328 0.86 71.24 ? H122 J22 1101 A 1 HETATM 46 H H132 J22 . . . E 3 97.939 -64.608 -30.138 0.86 76 ? H132 J22 1101 A 1 HETATM 47 H H131 J22 . . . E 3 98.381 -63.986 -28.877 0.86 76 ? H131 J22 1101 A 1 HETATM 48 H H142 J22 . . . E 3 95.996 -63.755 -29.333 0.86 76.75 ? H142 J22 1101 A 1 HETATM 49 H H141 J22 . . . E 3 96.336 -64.076 -27.93 0.86 76.75 ? H141 J22 1101 A 1 HETATM 50 H H151 J22 . . . E 3 94.73 -65.642 -28.37 0.86 75.03 ? H151 J22 1101 A 1 HETATM 51 H H152 J22 . . . E 3 95.969 -66.414 -28.494 0.86 75.03 ? H152 J22 1101 A 1 HETATM 52 H H171 J22 . . . E 3 93.604 -66.157 -31.646 0.86 65.96 ? H171 J22 1101 A 1 HETATM 53 H H181 J22 . . . E 3 92.324 -67.13 -29.993 0.86 64.76 ? H181 J22 1101 A 1 HETATM 54 H H182 J22 . . . E 3 93.543 -67.795 -29.332 0.86 64.76 ? H182 J22 1101 A 1 HETATM 55 H H201 J22 . . . E 3 95.13 -68.433 -31.504 0.86 66.14 ? H201 J22 1101 A 1 HETATM 56 H H221 J22 . . . E 3 94.7 -69.421 -33.668 0.86 59.66 ? H221 J22 1101 A 1 HETATM 57 H H231 J22 . . . E 3 94.502 -69.313 -35.975 0.86 57.44 ? H231 J22 1101 A 1 HETATM 58 H H273 J22 . . . E 3 92.144 -67.052 -36.574 0.86 51.44 ? H273 J22 1101 A 1 HETATM 59 H H272 J22 . . . E 3 91.349 -66.955 -37.808 0.86 51.44 ? H272 J22 1101 A 1 HETATM 60 H H271 J22 . . . E 3 92.06 -65.772 -37.295 0.86 51.44 ? H271 J22 1101 A 1 HETATM 61 H H292 J22 . . . E 3 92.044 -66.6 -41.268 0.86 58.58 ? H292 J22 1101 A 1 HETATM 62 H H291 J22 . . . E 3 91.499 -66.148 -39.98 0.86 58.58 ? H291 J22 1101 A 1 HETATM 63 H H293 J22 . . . E 3 91.369 -67.559 -40.381 0.86 58.58 ? H293 J22 1101 A 1 HETATM 64 H H301 J22 . . . E 3 94.408 -67.568 -41.369 0.86 67.94 ? H301 J22 1101 A 1 HETATM 65 H H311 J22 . . . E 3 96.431 -68.038 -40.305 0.86 70.9 ? H311 J22 1101 A 1 HETATM 66 H H321 J22 . . . E 3 96.561 -67.913 -37.98 0.86 69.27 ? H321 J22 1101 A 1 HETATM 67 H H331 J22 . . . E 3 95.077 -65.339 -35.91 0.86 51.95 ? H331 J22 1101 A 1 HETATM 68 H H341 J22 . . . E 3 95.284 -65.402 -33.572 0.86 55.44 ? H341 J22 1101 A 1 HETATM 69 H H191 J22 . . . E 3 93.529 -69.333 -30.589 0.86 73.08 ? H191 J22 1101 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 137 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #