data_6EDS # _model_server_result.job_id jgr7cws_dQO5O5KPt5osAQ _model_server_result.datetime_utc '2024-12-23 15:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 6EDS # _exptl.entry_id 6EDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EDS _cell.length_a 263.119 _cell.length_b 263.119 _cell.length_c 90.322 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 97 n n N1 C6 EPE sing 98 n n N1 C9 EPE sing 99 n n C2 C3 EPE sing 100 n n C2 H21 EPE sing 101 n n C2 H22 EPE sing 102 n n C3 N4 EPE sing 103 n n C3 H31 EPE sing 104 n n C3 H32 EPE sing 105 n n N4 C5 EPE sing 106 n n N4 C7 EPE sing 107 n n C5 C6 EPE sing 108 n n C5 H51 EPE sing 109 n n C5 H52 EPE sing 110 n n C6 H61 EPE sing 111 n n C6 H62 EPE sing 112 n n C7 C8 EPE sing 113 n n C7 H71 EPE sing 114 n n C7 H72 EPE sing 115 n n C8 O8 EPE sing 116 n n C8 H81 EPE sing 117 n n C8 H82 EPE sing 118 n n O8 HO8 EPE sing 119 n n C9 C10 EPE sing 120 n n C9 H91 EPE sing 121 n n C9 H92 EPE sing 122 n n C10 S EPE sing 123 n n C10 H101 EPE sing 124 n n C10 H102 EPE sing 125 n n S O1S EPE doub 126 n n S O2S EPE doub 127 n n S O3S EPE sing 128 n n O3S HOS3 EPE sing 129 n n # _atom_sites.entry_id 6EDS _atom_sites.fract_transf_matrix[1][1] 0.003801 _atom_sites.fract_transf_matrix[1][2] 0.002194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J22 A 1 1101 1 J22 J22 . F 4 EPE A 1 1102 1102 EPE EPE . G 5 PEG A 1 1103 1103 PEG PEG . H 6 DIO A 1 1104 1104 DIO DIO . I 4 EPE B 1 1101 1102 EPE EPE . J 5 PEG B 1 1102 1103 PEG PEG . K 6 DIO B 1 1103 1104 DIO DIO . L 3 J22 B 1 1104 1 J22 J22 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 4 97.08 -55.26 3.533 0.92 80.18 ? N1 EPE 1102 A 1 HETATM 2 C C2 EPE . . . F 4 95.696 -55.441 3.982 0.92 85.87 ? C2 EPE 1102 A 1 HETATM 3 C C3 EPE . . . F 4 95.615 -56.59 4.977 0.92 91.24 ? C3 EPE 1102 A 1 HETATM 4 N N4 EPE . . . F 4 96.148 -57.786 4.357 0.92 92.6 ? N4 EPE 1102 A 1 HETATM 5 C C5 EPE . . . F 4 97.484 -57.681 3.786 0.92 87.02 ? C5 EPE 1102 A 1 HETATM 6 C C6 EPE . . . F 4 97.613 -56.462 2.874 0.92 82.41 ? C6 EPE 1102 A 1 HETATM 7 C C7 EPE . . . F 4 95.556 -59.072 4.712 0.92 93.06 ? C7 EPE 1102 A 1 HETATM 8 C C8 EPE . . . F 4 95.758 -60.157 3.658 0.92 89.22 ? C8 EPE 1102 A 1 HETATM 9 O O8 EPE . . . F 4 94.731 -61.123 3.746 0.92 86.79 ? O8 EPE 1102 A 1 HETATM 10 C C9 EPE . . . F 4 97.317 -54.042 2.728 0.92 80.04 ? C9 EPE 1102 A 1 HETATM 11 C C10 EPE . . . F 4 96.275 -53.721 1.649 0.92 82.7 ? C10 EPE 1102 A 1 HETATM 12 S S EPE . . . F 4 96.132 -51.938 1.3 0.92 88.35 ? S EPE 1102 A 1 HETATM 13 O O1S EPE . . . F 4 97.326 -51.436 0.618 0.92 89.47 ? O1S EPE 1102 A 1 HETATM 14 O O2S EPE . . . F 4 94.969 -51.712 0.444 0.92 84.3 ? O2S EPE 1102 A 1 HETATM 15 O O3S EPE . . . F 4 95.94 -51.207 2.555 0.92 95.43 ? O3S EPE 1102 A 1 HETATM 16 H H21 EPE . . . F 4 95.339 -54.524 4.451 0.92 103.05 ? H21 EPE 1102 A 1 HETATM 17 H H22 EPE . . . F 4 95.057 -55.654 3.125 0.92 103.05 ? H22 EPE 1102 A 1 HETATM 18 H H31 EPE . . . F 4 94.579 -56.755 5.271 0.92 109.49 ? H31 EPE 1102 A 1 HETATM 19 H H32 EPE . . . F 4 96.191 -56.347 5.87 0.92 109.49 ? H32 EPE 1102 A 1 HETATM 20 H H51 EPE . . . F 4 97.705 -58.583 3.216 0.92 104.42 ? H51 EPE 1102 A 1 HETATM 21 H H52 EPE . . . F 4 98.215 -57.609 4.591 0.92 104.42 ? H52 EPE 1102 A 1 HETATM 22 H H61 EPE . . . F 4 98.662 -56.304 2.622 0.92 98.89 ? H61 EPE 1102 A 1 HETATM 23 H H62 EPE . . . F 4 97.068 -56.641 1.947 0.92 98.89 ? H62 EPE 1102 A 1 HETATM 24 H H71 EPE . . . F 4 95.988 -59.41 5.654 0.92 111.67 ? H71 EPE 1102 A 1 HETATM 25 H H72 EPE . . . F 4 94.487 -58.934 4.876 0.92 111.67 ? H72 EPE 1102 A 1 HETATM 26 H H81 EPE . . . F 4 95.753 -59.707 2.665 0.92 107.06 ? H81 EPE 1102 A 1 HETATM 27 H H82 EPE . . . F 4 96.725 -60.636 3.807 0.92 107.06 ? H82 EPE 1102 A 1 HETATM 28 H HO8 EPE . . . F 4 94.115 -60.88 4.468 0.92 104.15 ? HO8 EPE 1102 A 1 HETATM 29 H H91 EPE . . . F 4 97.38 -53.191 3.406 0.92 96.05 ? H91 EPE 1102 A 1 HETATM 30 H H92 EPE . . . F 4 98.29 -54.134 2.247 0.92 96.05 ? H92 EPE 1102 A 1 HETATM 31 H H101 EPE . . . F 4 96.543 -54.242 0.73 0.92 99.24 ? H101 EPE 1102 A 1 HETATM 32 H H102 EPE . . . F 4 95.304 -54.099 1.969 0.92 99.24 ? H102 EPE 1102 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #