data_6EDS # _model_server_result.job_id 9aKOE3oXveOjh70y_Rdi4Q _model_server_result.datetime_utc '2024-12-23 15:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1104}' # _entry.id 6EDS # _exptl.entry_id 6EDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EDS _cell.length_a 263.119 _cell.length_b 263.119 _cell.length_c 90.322 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 6EDS _atom_sites.fract_transf_matrix[1][1] 0.003801 _atom_sites.fract_transf_matrix[1][2] 0.002194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J22 A 1 1101 1 J22 J22 . F 4 EPE A 1 1102 1102 EPE EPE . G 5 PEG A 1 1103 1103 PEG PEG . H 6 DIO A 1 1104 1104 DIO DIO . I 4 EPE B 1 1101 1102 EPE EPE . J 5 PEG B 1 1102 1103 PEG PEG . K 6 DIO B 1 1103 1104 DIO DIO . L 3 J22 B 1 1104 1 J22 J22 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . H 6 125.778 -63.388 -18.507 1 85.21 ? C1 DIO 1104 A 1 HETATM 2 C C2 DIO . . . H 6 127.516 -63.874 -17.04 1 88.47 ? C2 DIO 1104 A 1 HETATM 3 C C1' DIO . . . H 6 126.691 -62.483 -19.327 1 86.23 ? C1' DIO 1104 A 1 HETATM 4 C C2' DIO . . . H 6 128.406 -62.899 -17.814 1 93.61 ? C2' DIO 1104 A 1 HETATM 5 O O1 DIO . . . H 6 126.488 -64.392 -17.834 1 85.21 ? O1 DIO 1104 A 1 HETATM 6 O O1' DIO . . . H 6 127.68 -61.924 -18.515 1 93.09 ? O1' DIO 1104 A 1 HETATM 7 H H11 DIO . . . H 6 125.135 -63.805 -19.102 1 102.25 ? H11 DIO 1104 A 1 HETATM 8 H H12 DIO . . . H 6 125.306 -62.848 -17.855 1 102.25 ? H12 DIO 1104 A 1 HETATM 9 H H21 DIO . . . H 6 127.124 -63.409 -16.284 1 106.16 ? H21 DIO 1104 A 1 HETATM 10 H H22 DIO . . . H 6 128.062 -64.608 -16.716 1 106.16 ? H22 DIO 1104 A 1 HETATM 11 H "H1'1" DIO . . . H 6 126.162 -61.772 -19.722 1 103.48 ? "H1'1" DIO 1104 A 1 HETATM 12 H "H1'2" DIO . . . H 6 127.111 -63.005 -20.028 1 103.48 ? "H1'2" DIO 1104 A 1 HETATM 13 H "H2'1" DIO . . . H 6 128.939 -63.404 -18.449 1 112.33 ? "H2'1" DIO 1104 A 1 HETATM 14 H "H2'2" DIO . . . H 6 128.997 -62.455 -17.187 1 112.33 ? "H2'2" DIO 1104 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #