data_6EDS # _model_server_result.job_id sIoF3haQzX01paJfqEw7KA _model_server_result.datetime_utc '2024-12-23 15:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eds # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1104}' # _entry.id 6EDS # _exptl.entry_id 6EDS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.649 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "{(8R,9S,10S)-9-(2',3'-dimethyl[1,1'-biphenyl]-4-yl)-6-[(1-methyl-1H-imidazol-2-yl)sulfonyl]-1,6-diazabicyclo[6.2.0]decan-10-yl}methanol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EDS _cell.length_a 263.119 _cell.length_b 263.119 _cell.length_c 90.322 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EDS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # _chem_comp.formula 'C27 H34 N4 O3 S' _chem_comp.formula_weight 494.649 _chem_comp.id J22 _chem_comp.mon_nstd_flag . _chem_comp.name "{(8R,9S,10S)-9-(2',3'-dimethyl[1,1'-biphenyl]-4-yl)-6-[(1-methyl-1H-imidazol-2-yl)sulfonyl]-1,6-diazabicyclo[6.2.0]decan-10-yl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 S02 J22 doub 218 n n C06 C05 J22 doub 219 n y C06 N07 J22 sing 220 n y C05 N04 J22 sing 221 n y C08 N07 J22 sing 222 n n N07 C03 J22 sing 223 n y N04 C03 J22 doub 224 n y C03 S02 J22 sing 225 n n S02 O01 J22 doub 226 n n S02 N09 J22 sing 227 n n C13 C12 J22 sing 228 n n C13 C14 J22 sing 229 n n C12 N09 J22 sing 230 n n N09 C10 J22 sing 231 n n C14 C15 J22 sing 232 n n C10 C11 J22 sing 233 n n C15 N16 J22 sing 234 n n C11 N16 J22 sing 235 n n C11 C20 J22 sing 236 n n N16 C17 J22 sing 237 n n C34 C33 J22 doub 238 n y C34 C21 J22 sing 239 n y C33 C24 J22 sing 240 n y C20 C21 J22 sing 241 n n C20 C17 J22 sing 242 n n C32 C31 J22 doub 243 n y C32 C25 J22 sing 244 n y C21 C22 J22 doub 245 n y C31 C30 J22 sing 246 n y C17 C18 J22 sing 247 n n C24 C25 J22 sing 248 n n C24 C23 J22 doub 249 n y C25 C26 J22 doub 250 n y C22 C23 J22 sing 251 n y C30 C28 J22 doub 252 n y C18 O19 J22 sing 253 n n C26 C28 J22 sing 254 n y C26 C27 J22 sing 255 n n C28 C29 J22 sing 256 n n C05 H051 J22 sing 257 n n C06 H061 J22 sing 258 n n C08 H083 J22 sing 259 n n C08 H081 J22 sing 260 n n C08 H082 J22 sing 261 n n C10 H102 J22 sing 262 n n C10 H101 J22 sing 263 n n C11 H111 J22 sing 264 n n C12 H121 J22 sing 265 n n C12 H122 J22 sing 266 n n C13 H132 J22 sing 267 n n C13 H131 J22 sing 268 n n C14 H142 J22 sing 269 n n C14 H141 J22 sing 270 n n C15 H151 J22 sing 271 n n C15 H152 J22 sing 272 n n C17 H171 J22 sing 273 n n C18 H181 J22 sing 274 n n C18 H182 J22 sing 275 n n C20 H201 J22 sing 276 n n C22 H221 J22 sing 277 n n C23 H231 J22 sing 278 n n C27 H273 J22 sing 279 n n C27 H272 J22 sing 280 n n C27 H271 J22 sing 281 n n C29 H292 J22 sing 282 n n C29 H291 J22 sing 283 n n C29 H293 J22 sing 284 n n C30 H301 J22 sing 285 n n C31 H311 J22 sing 286 n n C32 H321 J22 sing 287 n n C33 H331 J22 sing 288 n n C34 H341 J22 sing 289 n n O19 H191 J22 sing 290 n n # _atom_sites.entry_id 6EDS _atom_sites.fract_transf_matrix[1][1] 0.003801 _atom_sites.fract_transf_matrix[1][2] 0.002194 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J22 A 1 1101 1 J22 J22 . F 4 EPE A 1 1102 1102 EPE EPE . G 5 PEG A 1 1103 1103 PEG PEG . H 6 DIO A 1 1104 1104 DIO DIO . I 4 EPE B 1 1101 1102 EPE EPE . J 5 PEG B 1 1102 1103 PEG PEG . K 6 DIO B 1 1103 1104 DIO DIO . L 3 J22 B 1 1104 1 J22 J22 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 J22 . . . L 3 63.206 -99.065 22.993 0.83 79.98 ? C03 J22 1104 B 1 HETATM 2 C C05 J22 . . . L 3 64.075 -97.262 23.999 0.83 85.21 ? C05 J22 1104 B 1 HETATM 3 C C06 J22 . . . L 3 64.672 -97.366 22.715 0.83 83.04 ? C06 J22 1104 B 1 HETATM 4 C C08 J22 . . . L 3 64.447 -98.98 20.764 0.83 78.6 ? C08 J22 1104 B 1 HETATM 5 C C10 J22 . . . L 3 61.559 -100.747 25.344 0.83 68.83 ? C10 J22 1104 B 1 HETATM 6 C C11 J22 . . . L 3 61.142 -101.988 26.234 0.83 66.1 ? C11 J22 1104 B 1 HETATM 7 C C12 J22 . . . L 3 59.668 -100.573 23.671 0.83 70.74 ? C12 J22 1104 B 1 HETATM 8 C C13 J22 . . . L 3 58.808 -101.818 24.07 0.83 70.26 ? C13 J22 1104 B 1 HETATM 9 C C14 J22 . . . L 3 57.982 -101.626 25.367 0.83 71.9 ? C14 J22 1104 B 1 HETATM 10 C C15 J22 . . . L 3 58.828 -100.949 26.485 0.83 74.59 ? C15 J22 1104 B 1 HETATM 11 C C17 J22 . . . L 3 60.56 -102.062 28.337 0.83 64.26 ? C17 J22 1104 B 1 HETATM 12 C C18 J22 . . . L 3 60.428 -100.881 29.306 0.83 64.36 ? C18 J22 1104 B 1 HETATM 13 C C20 J22 . . . L 3 61.91 -102.036 27.579 0.83 63.78 ? C20 J22 1104 B 1 HETATM 14 C C21 J22 . . . L 3 62.823 -103.241 27.859 0.83 60.22 ? C21 J22 1104 B 1 HETATM 15 C C22 J22 . . . L 3 64.203 -103.013 27.921 0.83 61.22 ? C22 J22 1104 B 1 HETATM 16 C C23 J22 . . . L 3 65.086 -104.068 28.197 0.83 57.38 ? C23 J22 1104 B 1 HETATM 17 C C24 J22 . . . L 3 64.633 -105.39 28.422 0.83 52.23 ? C24 J22 1104 B 1 HETATM 18 C C25 J22 . . . L 3 65.617 -106.386 28.716 0.83 48.82 ? C25 J22 1104 B 1 HETATM 19 C C26 J22 . . . L 3 65.619 -107.163 29.916 0.83 44.32 ? C26 J22 1104 B 1 HETATM 20 C C27 J22 . . . L 3 64.475 -107.002 30.921 0.83 44.16 ? C27 J22 1104 B 1 HETATM 21 C C28 J22 . . . L 3 66.652 -108.092 30.15 0.83 45.98 ? C28 J22 1104 B 1 HETATM 22 C C29 J22 . . . L 3 66.653 -108.939 31.411 0.83 43.97 ? C29 J22 1104 B 1 HETATM 23 C C30 J22 . . . L 3 67.699 -108.231 29.202 0.83 55.16 ? C30 J22 1104 B 1 HETATM 24 C C31 J22 . . . L 3 67.728 -107.45 28.014 0.83 56.66 ? C31 J22 1104 B 1 HETATM 25 C C32 J22 . . . L 3 66.689 -106.526 27.79 0.83 53.61 ? C32 J22 1104 B 1 HETATM 26 C C33 J22 . . . L 3 63.228 -105.615 28.378 0.83 57.04 ? C33 J22 1104 B 1 HETATM 27 C C34 J22 . . . L 3 62.333 -104.546 28.101 0.83 59.37 ? C34 J22 1104 B 1 HETATM 28 N N04 J22 . . . L 3 63.174 -98.333 24.135 0.83 82.98 ? N04 J22 1104 B 1 HETATM 29 N N07 J22 . . . L 3 64.11 -98.485 22.133 0.83 80.81 ? N07 J22 1104 B 1 HETATM 30 N N09 J22 . . . L 3 61.139 -100.777 23.904 0.83 71.91 ? N09 J22 1104 B 1 HETATM 31 N N16 J22 . . . L 3 59.831 -101.904 27.047 0.83 68.36 ? N16 J22 1104 B 1 HETATM 32 O O01 J22 . . . L 3 63.094 -101.703 22.526 0.83 78.2 ? O01 J22 1104 B 1 HETATM 33 O O19 J22 . . . L 3 61.784 -100.573 29.783 0.83 69.83 ? O19 J22 1104 B 1 HETATM 34 O O35 J22 . . . L 3 61.573 -100.402 21.413 0.83 75.56 ? O35 J22 1104 B 1 HETATM 35 S S02 J22 . . . L 3 62.22 -100.546 22.691 0.83 75.05 ? S02 J22 1104 B 1 HETATM 36 H H051 J22 . . . L 3 64.222 -96.624 24.659 0.83 102.25 ? H051 J22 1104 B 1 HETATM 37 H H061 J22 . . . L 3 65.306 -96.792 22.353 0.83 99.65 ? H061 J22 1104 B 1 HETATM 38 H H083 J22 . . . L 3 65.151 -98.51 20.357 0.83 94.32 ? H083 J22 1104 B 1 HETATM 39 H H081 J22 . . . L 3 63.705 -98.927 20.191 0.83 94.32 ? H081 J22 1104 B 1 HETATM 40 H H082 J22 . . . L 3 64.699 -99.884 20.789 0.83 94.32 ? H082 J22 1104 B 1 HETATM 41 H H102 J22 . . . L 3 61.274 -99.973 25.793 0.83 82.6 ? H102 J22 1104 B 1 HETATM 42 H H101 J22 . . . L 3 62.492 -100.669 25.407 0.83 82.6 ? H101 J22 1104 B 1 HETATM 43 H H111 J22 . . . L 3 61.182 -102.804 25.77 0.83 79.32 ? H111 J22 1104 B 1 HETATM 44 H H121 J22 . . . L 3 59.319 -99.841 24.144 0.83 84.89 ? H121 J22 1104 B 1 HETATM 45 H H122 J22 . . . L 3 59.519 -100.34 22.773 0.83 84.89 ? H122 J22 1104 B 1 HETATM 46 H H132 J22 . . . L 3 59.37 -102.566 24.155 0.83 84.31 ? H132 J22 1104 B 1 HETATM 47 H H131 J22 . . . L 3 58.232 -102.054 23.366 0.83 84.31 ? H131 J22 1104 B 1 HETATM 48 H H142 J22 . . . L 3 57.659 -102.453 25.673 0.83 86.28 ? H142 J22 1104 B 1 HETATM 49 H H141 J22 . . . L 3 57.205 -101.134 25.178 0.83 86.28 ? H141 J22 1104 B 1 HETATM 50 H H151 J22 . . . L 3 58.261 -100.599 27.147 0.83 89.5 ? H151 J22 1104 B 1 HETATM 51 H H152 J22 . . . L 3 59.204 -100.174 26.111 0.83 89.5 ? H152 J22 1104 B 1 HETATM 52 H H171 J22 . . . L 3 60.431 -102.904 28.732 0.83 77.12 ? H171 J22 1104 B 1 HETATM 53 H H181 J22 . . . L 3 59.864 -101.097 30.024 0.83 77.24 ? H181 J22 1104 B 1 HETATM 54 H H182 J22 . . . L 3 60.119 -100.103 28.882 0.83 77.24 ? H182 J22 1104 B 1 HETATM 55 H H201 J22 . . . L 3 62.333 -101.211 27.725 0.83 76.53 ? H201 J22 1104 B 1 HETATM 56 H H221 J22 . . . L 3 64.555 -102.166 27.777 0.83 73.47 ? H221 J22 1104 B 1 HETATM 57 H H231 J22 . . . L 3 66.001 -103.916 28.232 0.83 68.85 ? H231 J22 1104 B 1 HETATM 58 H H273 J22 . . . L 3 64.078 -106.151 30.951 0.83 52.99 ? H273 J22 1104 B 1 HETATM 59 H H272 J22 . . . L 3 64.72 -107.155 31.815 0.83 52.99 ? H272 J22 1104 B 1 HETATM 60 H H271 J22 . . . L 3 63.743 -107.576 30.796 0.83 52.99 ? H271 J22 1104 B 1 HETATM 61 H H292 J22 . . . L 3 67.151 -109.734 31.372 0.83 52.76 ? H292 J22 1104 B 1 HETATM 62 H H291 J22 . . . L 3 65.804 -109.234 31.682 0.83 52.76 ? H291 J22 1104 B 1 HETATM 63 H H293 J22 . . . L 3 66.99 -108.516 32.178 0.83 52.76 ? H293 J22 1104 B 1 HETATM 64 H H301 J22 . . . L 3 68.393 -108.835 29.326 0.83 66.19 ? H301 J22 1104 B 1 HETATM 65 H H311 J22 . . . L 3 68.411 -107.539 27.39 0.83 67.99 ? H311 J22 1104 B 1 HETATM 66 H H321 J22 . . . L 3 66.695 -106.007 27.02 0.83 64.34 ? H321 J22 1104 B 1 HETATM 67 H H331 J22 . . . L 3 62.925 -106.48 28.533 0.83 68.44 ? H331 J22 1104 B 1 HETATM 68 H H341 J22 . . . L 3 61.423 -104.73 28.074 0.83 71.24 ? H341 J22 1104 B 1 HETATM 69 H H191 J22 . . . L 3 61.989 -99.871 29.386 0.83 83.8 ? H191 J22 1104 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #