data_6EET # _model_server_result.job_id ZUsqERcfmyq-NPiYzFuobg _model_server_result.datetime_utc '2025-09-16 22:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1405}' # _entry.id 6EET # _exptl.entry_id 6EET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EET _cell.length_a 129.507 _cell.length_b 170.059 _cell.length_c 91.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EET _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1343 NAG 2 n B NAG 2 B 2 NAG A 1344 NAG 2 n C NAG 1 C 1 NAG A 1346 NAG 2 n C NAG 2 C 2 NAG A 1347 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 99 A SER 996 1_555 D C1 MAN . A MAN 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A OG SER 101 A SER 998 1_555 G C1 MAN . A MAN 1408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale3 A OG1 THR 103 A THR 1000 1_555 E C1 MAN . A MAN 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 A ND2 ASN 166 A ASN 1063 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 257 A ASN 1154 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? metalc ? metalc1 A OD1 ASN 2 A ASN 899 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A O TYR 4 A TYR 901 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A OD1 ASP 34 A ASP 931 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 A OD2 ASP 34 A ASP 931 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc5 A OD2 ASP 36 A ASP 933 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 A O ALA 42 A ALA 939 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 A OD1 ASP 92 A ASP 989 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 A OD2 ASP 92 A ASP 989 1_555 K CA CA . A CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc9 A OE2 GLU 129 A GLU 1026 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc10 A OE1 GLU 129 A GLU 1026 1_555 J CA CA . A CA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 A OD1 ASP 178 A ASP 1075 1_555 J CA CA . A CA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc12 A OE1 GLU 180 A GLU 1077 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc13 A OE2 GLU 180 A GLU 1077 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc14 A OE2 GLU 180 A GLU 1077 1_555 J CA CA . A CA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 A OD1 ASP 218 A ASP 1115 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc16 A O GLU 219 A GLU 1116 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc17 A OD1 ASN 220 A ASN 1117 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc18 A OD1 ASP 221 A ASP 1118 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc19 A OD2 ASP 221 A ASP 1118 1_555 J CA CA . A CA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc20 A O HIS 222 A HIS 1119 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc21 A OD1 ASP 252 A ASP 1149 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc22 A OD1 ASP 254 A ASP 1151 1_555 H CA CA . A CA 1409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc23 A OD2 ASP 254 A ASP 1151 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc24 A O TYR 258 A TYR 1155 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc25 A OD2 ASP 308 A ASP 1205 1_555 I CA CA . A CA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 249 n n C1 O1 MAN sing 250 n n C1 O5 MAN sing 251 n n C1 H1 MAN sing 252 n n C2 C3 MAN sing 253 n n C2 O2 MAN sing 254 n n C2 H2 MAN sing 255 n n C3 C4 MAN sing 256 n n C3 O3 MAN sing 257 n n C3 H3 MAN sing 258 n n C4 C5 MAN sing 259 n n C4 O4 MAN sing 260 n n C4 H4 MAN sing 261 n n C5 C6 MAN sing 262 n n C5 O5 MAN sing 263 n n C5 H5 MAN sing 264 n n C6 O6 MAN sing 265 n n C6 H61 MAN sing 266 n n C6 H62 MAN sing 267 n n O1 HO1 MAN sing 268 n n O2 HO2 MAN sing 269 n n O3 HO3 MAN sing 270 n n O4 HO4 MAN sing 271 n n O6 HO6 MAN sing 272 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6EET _atom_sites.fract_transf_matrix[1][1] 0.007722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MAN A 1 1405 1501 MAN MAN . E 3 MAN A 1 1406 1601 MAN MAN . F 4 EPE A 1 1407 1701 EPE EPE . G 3 MAN A 1 1408 1801 MAN MAN . H 5 CA A 1 1409 2 CA CA . I 5 CA A 1 1410 3 CA CA . J 5 CA A 1 1411 4 CA CA . K 5 CA A 1 1412 5 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 3 32.562 -71.876 46.478 1 120.39 ? C1 MAN 1405 A 1 HETATM 2 C C2 MAN . . . D 3 32.53 -73.257 47.101 1 119.88 ? C2 MAN 1405 A 1 HETATM 3 C C3 MAN . . . D 3 31.406 -73.297 48.125 1 114.21 ? C3 MAN 1405 A 1 HETATM 4 C C4 MAN . . . D 3 31.619 -72.18 49.139 1 112.91 ? C4 MAN 1405 A 1 HETATM 5 C C5 MAN . . . D 3 32.036 -70.846 48.51 1 116.46 ? C5 MAN 1405 A 1 HETATM 6 C C6 MAN . . . D 3 32.595 -69.905 49.54 1 116.73 ? C6 MAN 1405 A 1 HETATM 7 O O2 MAN . . . D 3 33.83 -73.519 47.662 1 117.65 ? O2 MAN 1405 A 1 HETATM 8 O O3 MAN . . . D 3 31.3 -74.598 48.723 1 102.38 ? O3 MAN 1405 A 1 HETATM 9 O O4 MAN . . . D 3 30.362 -71.977 49.771 1 110.27 ? O4 MAN 1405 A 1 HETATM 10 O O5 MAN . . . D 3 33.021 -70.984 47.501 1 123 ? O5 MAN 1405 A 1 HETATM 11 O O6 MAN . . . D 3 31.489 -69.672 50.404 1 123.74 ? O6 MAN 1405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #