data_6EF3 # _model_server_result.job_id 3Al0P3QhGKJMccekU2e1ng _model_server_result.datetime_utc '2024-11-14 17:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ef3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":501}' # _entry.id 6EF3 # _exptl.entry_id 6EF3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EF3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 Y N N ? 25 Z N N ? 25 AA N N ? 25 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 W NZ LYS 3 s LYS 108 1_555 X C GLY 76 u GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 W NZ LYS 3 s LYS 108 1_555 X O GLY 76 u GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6EF3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 25 ATP H 1 501 501 ATP ATP . Z 25 ATP I 1 501 501 ATP ATP . AA 25 ATP J 1 501 501 ATP ATP . BA 26 ADP K 1 501 501 ADP ADP . CA 26 ADP L 1 501 501 ADP ADP . DA 25 ATP M 1 501 501 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 25 164.875 206.977 146.623 1 41.85 ? PG ATP 501 H 1 HETATM 2 O O1G ATP . . . Y 25 164.82 206.393 145.238 1 41.85 ? O1G ATP 501 H 1 HETATM 3 O O2G ATP . . . Y 25 166.112 206.632 147.407 1 41.85 ? O2G ATP 501 H 1 HETATM 4 O O3G ATP . . . Y 25 163.585 206.897 147.392 1 41.85 ? O3G ATP 501 H 1 HETATM 5 P PB ATP . . . Y 25 163.84 209.231 145.539 1 41.85 ? PB ATP 501 H 1 HETATM 6 O O1B ATP . . . Y 25 163.763 208.601 144.178 1 41.85 ? O1B ATP 501 H 1 HETATM 7 O O2B ATP . . . Y 25 162.653 209.26 146.463 1 41.85 ? O2B ATP 501 H 1 HETATM 8 O O3B ATP . . . Y 25 165.026 208.538 146.343 1 41.85 ? O3B ATP 501 H 1 HETATM 9 P PA ATP . . . Y 25 163.82 211.611 144.181 1 41.85 ? PA ATP 501 H 1 HETATM 10 O O1A ATP . . . Y 25 163.956 210.905 142.864 1 41.85 ? O1A ATP 501 H 1 HETATM 11 O O2A ATP . . . Y 25 162.485 212.154 144.603 1 41.85 ? O2A ATP 501 H 1 HETATM 12 O O3A ATP . . . Y 25 164.407 210.707 145.352 1 41.85 ? O3A ATP 501 H 1 HETATM 13 O O5' ATP . . . Y 25 164.886 212.787 144.205 1 41.85 ? O5' ATP 501 H 1 HETATM 14 C C5' ATP . . . Y 25 164.732 213.747 145.218 1 41.85 ? C5' ATP 501 H 1 HETATM 15 C C4' ATP . . . Y 25 165.844 214.776 145.104 1 41.85 ? C4' ATP 501 H 1 HETATM 16 O O4' ATP . . . Y 25 166.404 214.758 143.795 1 41.85 ? O4' ATP 501 H 1 HETATM 17 C C3' ATP . . . Y 25 165.431 216.204 145.389 1 41.85 ? C3' ATP 501 H 1 HETATM 18 O O3' ATP . . . Y 25 166.042 216.664 146.595 1 41.85 ? O3' ATP 501 H 1 HETATM 19 C C2' ATP . . . Y 25 165.887 217.014 144.207 1 41.85 ? C2' ATP 501 H 1 HETATM 20 O O2' ATP . . . Y 25 166.964 217.864 144.578 1 41.85 ? O2' ATP 501 H 1 HETATM 21 C C1' ATP . . . Y 25 166.38 216.038 143.167 1 41.85 ? C1' ATP 501 H 1 HETATM 22 N N9 ATP . . . Y 25 165.484 215.936 141.996 1 41.85 ? N9 ATP 501 H 1 HETATM 23 C C8 ATP . . . Y 25 165.006 214.766 141.534 1 41.85 ? C8 ATP 501 H 1 HETATM 24 N N7 ATP . . . Y 25 164.223 214.966 140.46 1 41.85 ? N7 ATP 501 H 1 HETATM 25 C C5 ATP . . . Y 25 164.194 216.264 140.218 1 41.85 ? C5 ATP 501 H 1 HETATM 26 C C6 ATP . . . Y 25 163.538 217.075 139.221 1 41.85 ? C6 ATP 501 H 1 HETATM 27 N N6 ATP . . . Y 25 162.782 216.417 138.327 1 41.85 ? N6 ATP 501 H 1 HETATM 28 N N1 ATP . . . Y 25 163.734 218.394 139.279 1 41.85 ? N1 ATP 501 H 1 HETATM 29 C C2 ATP . . . Y 25 164.518 218.938 140.227 1 41.85 ? C2 ATP 501 H 1 HETATM 30 N N3 ATP . . . Y 25 165.144 218.238 141.174 1 41.85 ? N3 ATP 501 H 1 HETATM 31 C C4 ATP . . . Y 25 165.028 216.909 141.212 1 41.85 ? C4 ATP 501 H 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 352 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #