data_6EFH # _model_server_result.job_id bYQ9TR0JqDJaTy3nsikSVA _model_server_result.datetime_utc '2024-10-27 14:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6efh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6EFH # _exptl.entry_id 6EFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.101 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,2S)-1-amino-1,2-dihydroxypropan-1-olate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EFH _cell.length_a 172.765 _cell.length_b 172.765 _cell.length_c 210.083 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 221 A CYS 221 1_555 C C2 PY0 . A PY0 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale2 B SG CYS 221 B CYS 221 1_555 G C2 PY0 . B PY0 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc1 A OD1 ASP 444 A ASP 444 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 A OD1 ASN 471 A ASN 471 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc3 A O GLY 473 A GLY 473 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 D O1A TPP . A TPP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 D O1B TPP . A TPP 602 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 B OD1 ASP 444 B ASP 444 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc7 B OD1 ASN 471 B ASN 471 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 B O GLY 473 B GLY 473 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc9 H O1A TPP . B TPP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc10 H O3B TPP . B TPP 601 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'C3 H8 N O3 -1' _chem_comp.formula_weight 106.101 _chem_comp.id PY0 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,2S)-1-amino-1,2-dihydroxypropan-1-olate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 PY0 sing 314 n n C2 O3 PY0 sing 315 n n C2 C1 PY0 sing 316 n n C1 O1 PY0 sing 317 n n C1 O2 PY0 sing 318 n n C1 N PY0 sing 319 n n C3 H31C PY0 sing 320 n n C3 H32C PY0 sing 321 n n C3 H33C PY0 sing 322 n n C2 H2 PY0 sing 323 n n O3 H3 PY0 sing 324 n n O1 H1 PY0 sing 325 n n N HN1 PY0 sing 326 n n N HN2 PY0 sing 327 n n # _atom_sites.entry_id 6EFH _atom_sites.fract_transf_matrix[1][1] 0.005788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PY0 A 1 601 600 PY0 PY0 . D 3 TPP A 1 602 601 TPP TPP . E 4 MG A 1 603 602 MG MG . F 5 1PE A 1 604 1 1PE 1PE . G 2 PY0 B 1 600 600 PY0 PY0 . H 3 TPP B 1 601 601 TPP TPP . I 4 MG B 1 602 602 MG MG . J 6 HOH A 1 701 4 HOH HOH . J 6 HOH A 2 702 6 HOH HOH . J 6 HOH A 3 703 28 HOH HOH . J 6 HOH A 4 704 26 HOH HOH . J 6 HOH A 5 705 1 HOH HOH . J 6 HOH A 6 706 3 HOH HOH . J 6 HOH A 7 707 18 HOH HOH . J 6 HOH A 8 708 40 HOH HOH . J 6 HOH A 9 709 29 HOH HOH . J 6 HOH A 10 710 33 HOH HOH . J 6 HOH A 11 711 9 HOH HOH . J 6 HOH A 12 712 30 HOH HOH . J 6 HOH A 13 713 34 HOH HOH . J 6 HOH A 14 714 15 HOH HOH . J 6 HOH A 15 715 17 HOH HOH . J 6 HOH A 16 716 20 HOH HOH . J 6 HOH A 17 717 11 HOH HOH . J 6 HOH A 18 718 13 HOH HOH . J 6 HOH A 19 719 14 HOH HOH . J 6 HOH A 20 720 38 HOH HOH . J 6 HOH A 21 721 39 HOH HOH . J 6 HOH A 22 722 7 HOH HOH . J 6 HOH A 23 723 12 HOH HOH . J 6 HOH A 24 724 27 HOH HOH . J 6 HOH A 25 725 36 HOH HOH . J 6 HOH A 26 726 22 HOH HOH . J 6 HOH A 27 727 16 HOH HOH . J 6 HOH A 28 728 21 HOH HOH . J 6 HOH A 29 729 23 HOH HOH . J 6 HOH A 30 730 19 HOH HOH . K 6 HOH B 1 701 2 HOH HOH . K 6 HOH B 2 702 5 HOH HOH . K 6 HOH B 3 703 24 HOH HOH . K 6 HOH B 4 704 32 HOH HOH . K 6 HOH B 5 705 31 HOH HOH . K 6 HOH B 6 706 37 HOH HOH . K 6 HOH B 7 707 35 HOH HOH . K 6 HOH B 8 708 10 HOH HOH . K 6 HOH B 9 709 8 HOH HOH . K 6 HOH B 10 710 41 HOH HOH . K 6 HOH B 11 711 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PY0 . . . C 2 -58.896 -39.142 41.336 1 62.67 ? C3 PY0 601 A 1 HETATM 2 C C2 PY0 . . . C 2 -60.298 -39.634 41.729 1 63.23 ? C2 PY0 601 A 1 HETATM 3 O O3 PY0 . . . C 2 -61.156 -38.45 41.723 1 64.32 ? O3 PY0 601 A 1 HETATM 4 C C1 PY0 . . . C 2 -60.228 -40.13 43.214 1 63.32 ? C1 PY0 601 A 1 HETATM 5 O O1 PY0 . . . C 2 -61.366 -39.752 44.02 1 54.53 ? O1 PY0 601 A 1 HETATM 6 O O2 PY0 . . . C 2 -59.995 -41.56 43.316 1 62.53 ? O2 PY0 601 A 1 HETATM 7 N N PY0 . . . C 2 -59.09 -39.436 43.881 1 67.73 ? N PY0 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #