data_6EFW # _model_server_result.job_id 8iMpBK4ajv4em9JSRh8PsA _model_server_result.datetime_utc '2024-11-13 14:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6efw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6EFW # _exptl.entry_id 6EFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EFW _cell.length_a 85.42 _cell.length_b 85.42 _cell.length_c 187.08 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,3 A,B,C,D 2 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -85.42 -85.42 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -85.42 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -85.42 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -85.42 0 0 6 'crystal symmetry operation' 6_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -85.42 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -85.42 -85.42 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NA NA . A NA 401 1_555 D O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc2 B NA NA . A NA 401 1_555 D O HOH . A HOH 566 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EFW _atom_sites.fract_transf_matrix[1][1] 0.011707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 84 HOH HOH . D 4 HOH A 2 502 122 HOH HOH . D 4 HOH A 3 503 251 HOH HOH . D 4 HOH A 4 504 244 HOH HOH . D 4 HOH A 5 505 219 HOH HOH . D 4 HOH A 6 506 62 HOH HOH . D 4 HOH A 7 507 201 HOH HOH . D 4 HOH A 8 508 143 HOH HOH . D 4 HOH A 9 509 20 HOH HOH . D 4 HOH A 10 510 253 HOH HOH . D 4 HOH A 11 511 166 HOH HOH . D 4 HOH A 12 512 217 HOH HOH . D 4 HOH A 13 513 144 HOH HOH . D 4 HOH A 14 514 87 HOH HOH . D 4 HOH A 15 515 68 HOH HOH . D 4 HOH A 16 516 52 HOH HOH . D 4 HOH A 17 517 158 HOH HOH . D 4 HOH A 18 518 139 HOH HOH . D 4 HOH A 19 519 89 HOH HOH . D 4 HOH A 20 520 164 HOH HOH . D 4 HOH A 21 521 16 HOH HOH . D 4 HOH A 22 522 27 HOH HOH . D 4 HOH A 23 523 35 HOH HOH . D 4 HOH A 24 524 208 HOH HOH . D 4 HOH A 25 525 76 HOH HOH . D 4 HOH A 26 526 51 HOH HOH . D 4 HOH A 27 527 102 HOH HOH . D 4 HOH A 28 528 60 HOH HOH . D 4 HOH A 29 529 233 HOH HOH . D 4 HOH A 30 530 41 HOH HOH . D 4 HOH A 31 531 128 HOH HOH . D 4 HOH A 32 532 108 HOH HOH . D 4 HOH A 33 533 6 HOH HOH . D 4 HOH A 34 534 258 HOH HOH . D 4 HOH A 35 535 8 HOH HOH . D 4 HOH A 36 536 155 HOH HOH . D 4 HOH A 37 537 115 HOH HOH . D 4 HOH A 38 538 18 HOH HOH . D 4 HOH A 39 539 53 HOH HOH . D 4 HOH A 40 540 86 HOH HOH . D 4 HOH A 41 541 13 HOH HOH . D 4 HOH A 42 542 12 HOH HOH . D 4 HOH A 43 543 250 HOH HOH . D 4 HOH A 44 544 215 HOH HOH . D 4 HOH A 45 545 97 HOH HOH . D 4 HOH A 46 546 42 HOH HOH . D 4 HOH A 47 547 170 HOH HOH . D 4 HOH A 48 548 248 HOH HOH . D 4 HOH A 49 549 110 HOH HOH . D 4 HOH A 50 550 229 HOH HOH . D 4 HOH A 51 551 40 HOH HOH . D 4 HOH A 52 552 25 HOH HOH . D 4 HOH A 53 553 162 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 262 HOH HOH . D 4 HOH A 57 557 14 HOH HOH . D 4 HOH A 58 558 61 HOH HOH . D 4 HOH A 59 559 33 HOH HOH . D 4 HOH A 60 560 99 HOH HOH . D 4 HOH A 61 561 1 HOH HOH . D 4 HOH A 62 562 183 HOH HOH . D 4 HOH A 63 563 48 HOH HOH . D 4 HOH A 64 564 66 HOH HOH . D 4 HOH A 65 565 88 HOH HOH . D 4 HOH A 66 566 15 HOH HOH . D 4 HOH A 67 567 43 HOH HOH . D 4 HOH A 68 568 11 HOH HOH . D 4 HOH A 69 569 54 HOH HOH . D 4 HOH A 70 570 65 HOH HOH . D 4 HOH A 71 571 75 HOH HOH . D 4 HOH A 72 572 22 HOH HOH . D 4 HOH A 73 573 81 HOH HOH . D 4 HOH A 74 574 58 HOH HOH . D 4 HOH A 75 575 32 HOH HOH . D 4 HOH A 76 576 9 HOH HOH . D 4 HOH A 77 577 138 HOH HOH . D 4 HOH A 78 578 125 HOH HOH . D 4 HOH A 79 579 107 HOH HOH . D 4 HOH A 80 580 227 HOH HOH . D 4 HOH A 81 581 146 HOH HOH . D 4 HOH A 82 582 231 HOH HOH . D 4 HOH A 83 583 131 HOH HOH . D 4 HOH A 84 584 83 HOH HOH . D 4 HOH A 85 585 179 HOH HOH . D 4 HOH A 86 586 213 HOH HOH . D 4 HOH A 87 587 104 HOH HOH . D 4 HOH A 88 588 38 HOH HOH . D 4 HOH A 89 589 64 HOH HOH . D 4 HOH A 90 590 23 HOH HOH . D 4 HOH A 91 591 92 HOH HOH . D 4 HOH A 92 592 109 HOH HOH . D 4 HOH A 93 593 28 HOH HOH . D 4 HOH A 94 594 118 HOH HOH . D 4 HOH A 95 595 193 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 4 HOH HOH . D 4 HOH A 98 598 29 HOH HOH . D 4 HOH A 99 599 159 HOH HOH . D 4 HOH A 100 600 133 HOH HOH . D 4 HOH A 101 601 85 HOH HOH . D 4 HOH A 102 602 120 HOH HOH . D 4 HOH A 103 603 94 HOH HOH . D 4 HOH A 104 604 184 HOH HOH . D 4 HOH A 105 605 5 HOH HOH . D 4 HOH A 106 606 204 HOH HOH . D 4 HOH A 107 607 34 HOH HOH . D 4 HOH A 108 608 249 HOH HOH . D 4 HOH A 109 609 209 HOH HOH . D 4 HOH A 110 610 137 HOH HOH . D 4 HOH A 111 611 101 HOH HOH . D 4 HOH A 112 612 91 HOH HOH . D 4 HOH A 113 613 140 HOH HOH . D 4 HOH A 114 614 3 HOH HOH . D 4 HOH A 115 615 2 HOH HOH . D 4 HOH A 116 616 165 HOH HOH . D 4 HOH A 117 617 39 HOH HOH . D 4 HOH A 118 618 95 HOH HOH . D 4 HOH A 119 619 175 HOH HOH . D 4 HOH A 120 620 150 HOH HOH . D 4 HOH A 121 621 57 HOH HOH . D 4 HOH A 122 622 98 HOH HOH . D 4 HOH A 123 623 10 HOH HOH . D 4 HOH A 124 624 24 HOH HOH . D 4 HOH A 125 625 71 HOH HOH . D 4 HOH A 126 626 63 HOH HOH . D 4 HOH A 127 627 36 HOH HOH . D 4 HOH A 128 628 100 HOH HOH . D 4 HOH A 129 629 113 HOH HOH . D 4 HOH A 130 630 134 HOH HOH . D 4 HOH A 131 631 211 HOH HOH . D 4 HOH A 132 632 259 HOH HOH . D 4 HOH A 133 633 30 HOH HOH . D 4 HOH A 134 634 136 HOH HOH . D 4 HOH A 135 635 257 HOH HOH . D 4 HOH A 136 636 37 HOH HOH . D 4 HOH A 137 637 26 HOH HOH . D 4 HOH A 138 638 145 HOH HOH . D 4 HOH A 139 639 49 HOH HOH . D 4 HOH A 140 640 255 HOH HOH . D 4 HOH A 141 641 70 HOH HOH . D 4 HOH A 142 642 77 HOH HOH . D 4 HOH A 143 643 212 HOH HOH . D 4 HOH A 144 644 236 HOH HOH . D 4 HOH A 145 645 67 HOH HOH . D 4 HOH A 146 646 45 HOH HOH . D 4 HOH A 147 647 79 HOH HOH . D 4 HOH A 148 648 187 HOH HOH . D 4 HOH A 149 649 78 HOH HOH . D 4 HOH A 150 650 226 HOH HOH . D 4 HOH A 151 651 96 HOH HOH . D 4 HOH A 152 652 105 HOH HOH . D 4 HOH A 153 653 106 HOH HOH . D 4 HOH A 154 654 116 HOH HOH . D 4 HOH A 155 655 141 HOH HOH . D 4 HOH A 156 656 254 HOH HOH . D 4 HOH A 157 657 69 HOH HOH . D 4 HOH A 158 658 112 HOH HOH . D 4 HOH A 159 659 261 HOH HOH . D 4 HOH A 160 660 72 HOH HOH . D 4 HOH A 161 661 80 HOH HOH . D 4 HOH A 162 662 267 HOH HOH . D 4 HOH A 163 663 50 HOH HOH . D 4 HOH A 164 664 151 HOH HOH . D 4 HOH A 165 665 216 HOH HOH . D 4 HOH A 166 666 117 HOH HOH . D 4 HOH A 167 667 152 HOH HOH . D 4 HOH A 168 668 123 HOH HOH . D 4 HOH A 169 669 44 HOH HOH . D 4 HOH A 170 670 93 HOH HOH . D 4 HOH A 171 671 82 HOH HOH . D 4 HOH A 172 672 240 HOH HOH . D 4 HOH A 173 673 121 HOH HOH . D 4 HOH A 174 674 218 HOH HOH . D 4 HOH A 175 675 21 HOH HOH . D 4 HOH A 176 676 55 HOH HOH . D 4 HOH A 177 677 130 HOH HOH . D 4 HOH A 178 678 232 HOH HOH . D 4 HOH A 179 679 103 HOH HOH . D 4 HOH A 180 680 192 HOH HOH . D 4 HOH A 181 681 161 HOH HOH . D 4 HOH A 182 682 188 HOH HOH . D 4 HOH A 183 683 124 HOH HOH . D 4 HOH A 184 684 47 HOH HOH . D 4 HOH A 185 685 222 HOH HOH . D 4 HOH A 186 686 190 HOH HOH . D 4 HOH A 187 687 246 HOH HOH . D 4 HOH A 188 688 195 HOH HOH . D 4 HOH A 189 689 263 HOH HOH . D 4 HOH A 190 690 194 HOH HOH . D 4 HOH A 191 691 221 HOH HOH . D 4 HOH A 192 692 173 HOH HOH . D 4 HOH A 193 693 185 HOH HOH . D 4 HOH A 194 694 177 HOH HOH . D 4 HOH A 195 695 189 HOH HOH . D 4 HOH A 196 696 167 HOH HOH . D 4 HOH A 197 697 256 HOH HOH . D 4 HOH A 198 698 147 HOH HOH . D 4 HOH A 199 699 178 HOH HOH . D 4 HOH A 200 700 260 HOH HOH . D 4 HOH A 201 701 266 HOH HOH . D 4 HOH A 202 702 238 HOH HOH . D 4 HOH A 203 703 210 HOH HOH . D 4 HOH A 204 704 148 HOH HOH . D 4 HOH A 205 705 168 HOH HOH . D 4 HOH A 206 706 17 HOH HOH . D 4 HOH A 207 707 176 HOH HOH . D 4 HOH A 208 708 196 HOH HOH . D 4 HOH A 209 709 90 HOH HOH . D 4 HOH A 210 710 265 HOH HOH . D 4 HOH A 211 711 180 HOH HOH . D 4 HOH A 212 712 74 HOH HOH . D 4 HOH A 213 713 135 HOH HOH . D 4 HOH A 214 714 129 HOH HOH . D 4 HOH A 215 715 111 HOH HOH . D 4 HOH A 216 716 223 HOH HOH . D 4 HOH A 217 717 264 HOH HOH . D 4 HOH A 218 718 191 HOH HOH . D 4 HOH A 219 719 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -42.71 _atom_site.Cartn_y -42.71 _atom_site.Cartn_z -25.66 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 40.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #