data_6EG9
#
_model_server_result.job_id            yBYT0KolDu8ROmJaCFWHaQ 
_model_server_result.datetime_utc      '2024-12-30 17:14:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6eg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6EG9 
#
_exptl.entry_id    6EG9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              532.559 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6EG9 
_cell.length_a            85.037 
_cell.length_b            85.037 
_cell.length_c            434.301 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,F,G,H,I,J,L 1 1 
A,C,D,E,K 1 3 
B,F,G,H,I,J,L 2 1,4 
A,C,D,E,K 2 2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 y,-x+y,z-1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -72.3835 
3 'crystal symmetry operation' 8_445 x-y-1,-y-1,-z 1 0 0 0 -1 0 0 0 -1 -42.5185 -73.644202 0 
4 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -42.5185 -73.644202 -72.3835 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 242 A HIS 390 1_555 E CO CO . A CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc2 E CO CO . A CO 503 8_445 B NZ LYS 260 B LYS 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc3 B NE2 HIS 18 B HIS 166 1_555 H CO CO . B CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc4 B NE2 HIS 138 B HIS 286 1_555 I CO CO . B CO 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc5 B NE2 HIS 242 B HIS 390 1_555 J CO CO . B CO 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
#
_chem_comp.formula           'C29 H27 F3 N6 O' 
_chem_comp.formula_weight    532.559 
_chem_comp.id                0LI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Ponatinib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C84 0LI doub 1 n y 
N1 C1 0LI sing 2 n y 
N3 C20 0LI sing 3 n n 
N3 C21 0LI sing 4 n n 
N3 C24 0LI sing 5 n n 
C4 C5 0LI sing 6 n n 
C4 C3 0LI trip 7 n n 
C5 C6 0LI doub 8 n y 
C5 C10 0LI sing 9 n y 
C6 C7 0LI sing 10 n y 
C6 C11 0LI sing 11 n n 
C7 C8 0LI doub 12 n y 
C7 H7 0LI sing 13 n n 
C8 C9 0LI sing 14 n y 
C8 H8 0LI sing 15 n n 
C10 C9 0LI doub 16 n y 
C10 H10 0LI sing 17 n n 
C13 N2 0LI sing 18 n n 
C13 C14 0LI doub 19 n y 
C13 C18 0LI sing 20 n y 
C15 C14 0LI sing 21 n y 
C15 C16 0LI doub 22 n y 
C15 H15 0LI sing 23 n n 
C17 C16 0LI sing 24 n y 
C17 C18 0LI doub 25 n y 
C17 C19 0LI sing 26 n n 
C20 C16 0LI sing 27 n n 
C20 H20 0LI sing 28 n n 
C20 H20A 0LI sing 29 n n 
C21 C22 0LI sing 30 n n 
C21 H21 0LI sing 31 n n 
C21 H21A 0LI sing 32 n n 
C22 N4 0LI sing 33 n n 
C22 H22 0LI sing 34 n n 
C22 H22A 0LI sing 35 n n 
C24 C23 0LI sing 36 n n 
C24 H24 0LI sing 37 n n 
C24 H24A 0LI sing 38 n n 
C81 C82 0LI doub 39 n y 
C81 C84 0LI sing 40 n y 
C81 H81 0LI sing 41 n n 
C82 C83 0LI sing 42 n y 
C82 H82 0LI sing 43 n n 
C83 N81 0LI doub 44 n y 
C83 H83 0LI sing 45 n n 
N81 N82 0LI sing 46 n y 
N82 C84 0LI sing 47 n y 
N82 C2 0LI sing 48 n y 
C1 C2 0LI doub 49 n y 
C1 H1 0LI sing 50 n n 
C2 C3 0LI sing 51 n n 
C9 C12 0LI sing 52 n n 
C11 H11 0LI sing 53 n n 
C11 H11A 0LI sing 54 n n 
C11 H11B 0LI sing 55 n n 
C12 O1 0LI doub 56 n n 
C12 N2 0LI sing 57 n n 
N2 HN2 0LI sing 58 n n 
C14 H14 0LI sing 59 n n 
C18 H18 0LI sing 60 n n 
C19 F1 0LI sing 61 n n 
C19 F2 0LI sing 62 n n 
C19 F3 0LI sing 63 n n 
C23 N4 0LI sing 64 n n 
C23 H23 0LI sing 65 n n 
C23 H23A 0LI sing 66 n n 
C25 N4 0LI sing 67 n n 
C25 H25 0LI sing 68 n n 
C25 H25A 0LI sing 69 n n 
C25 H25B 0LI sing 70 n n 
#
_atom_sites.entry_id                     6EG9 
_atom_sites.fract_transf_matrix[1][1]    0.01176 
_atom_sites.fract_transf_matrix[1][2]    0.006789 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002303 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0LI A 1 501 1000 0LI 0LI . 
D 3 SO4 A 1 502 1 SO4 SO4 . 
E 4 CO A 1 503 4 CO CO . 
F 2 0LI B 1 501 1003 0LI 0LI . 
G 3 SO4 B 1 502 2 SO4 SO4 . 
H 4 CO B 1 503 1 CO CO . 
I 4 CO B 1 504 2 CO CO . 
J 4 CO B 1 505 3 CO CO . 
K 5 HOH A 1 601 43 HOH HOH . 
K 5 HOH A 2 602 57 HOH HOH . 
K 5 HOH A 3 603 14 HOH HOH . 
K 5 HOH A 4 604 5 HOH HOH . 
K 5 HOH A 5 605 79 HOH HOH . 
K 5 HOH A 6 606 65 HOH HOH . 
K 5 HOH A 7 607 7 HOH HOH . 
K 5 HOH A 8 608 36 HOH HOH . 
K 5 HOH A 9 609 64 HOH HOH . 
K 5 HOH A 10 610 67 HOH HOH . 
K 5 HOH A 11 611 16 HOH HOH . 
K 5 HOH A 12 612 91 HOH HOH . 
K 5 HOH A 13 613 9 HOH HOH . 
K 5 HOH A 14 614 66 HOH HOH . 
K 5 HOH A 15 615 22 HOH HOH . 
K 5 HOH A 16 616 73 HOH HOH . 
K 5 HOH A 17 617 10 HOH HOH . 
K 5 HOH A 18 618 41 HOH HOH . 
K 5 HOH A 19 619 62 HOH HOH . 
K 5 HOH A 20 620 68 HOH HOH . 
K 5 HOH A 21 621 61 HOH HOH . 
K 5 HOH A 22 622 96 HOH HOH . 
K 5 HOH A 23 623 6 HOH HOH . 
K 5 HOH A 24 624 19 HOH HOH . 
K 5 HOH A 25 625 42 HOH HOH . 
K 5 HOH A 26 626 90 HOH HOH . 
K 5 HOH A 27 627 33 HOH HOH . 
K 5 HOH A 28 628 13 HOH HOH . 
K 5 HOH A 29 629 99 HOH HOH . 
K 5 HOH A 30 630 77 HOH HOH . 
K 5 HOH A 31 631 20 HOH HOH . 
K 5 HOH A 32 632 86 HOH HOH . 
K 5 HOH A 33 633 81 HOH HOH . 
K 5 HOH A 34 634 82 HOH HOH . 
K 5 HOH A 35 635 94 HOH HOH . 
K 5 HOH A 36 636 74 HOH HOH . 
K 5 HOH A 37 637 83 HOH HOH . 
K 5 HOH A 38 638 26 HOH HOH . 
L 5 HOH B 1 601 39 HOH HOH . 
L 5 HOH B 2 602 24 HOH HOH . 
L 5 HOH B 3 603 88 HOH HOH . 
L 5 HOH B 4 604 51 HOH HOH . 
L 5 HOH B 5 605 23 HOH HOH . 
L 5 HOH B 6 606 93 HOH HOH . 
L 5 HOH B 7 607 89 HOH HOH . 
L 5 HOH B 8 608 12 HOH HOH . 
L 5 HOH B 9 609 50 HOH HOH . 
L 5 HOH B 10 610 60 HOH HOH . 
L 5 HOH B 11 611 21 HOH HOH . 
L 5 HOH B 12 612 3 HOH HOH . 
L 5 HOH B 13 613 17 HOH HOH . 
L 5 HOH B 14 614 59 HOH HOH . 
L 5 HOH B 15 615 78 HOH HOH . 
L 5 HOH B 16 616 30 HOH HOH . 
L 5 HOH B 17 617 38 HOH HOH . 
L 5 HOH B 18 618 1 HOH HOH . 
L 5 HOH B 19 619 95 HOH HOH . 
L 5 HOH B 20 620 8 HOH HOH . 
L 5 HOH B 21 621 40 HOH HOH . 
L 5 HOH B 22 622 58 HOH HOH . 
L 5 HOH B 23 623 49 HOH HOH . 
L 5 HOH B 24 624 54 HOH HOH . 
L 5 HOH B 25 625 72 HOH HOH . 
L 5 HOH B 26 626 85 HOH HOH . 
L 5 HOH B 27 627 44 HOH HOH . 
L 5 HOH B 28 628 84 HOH HOH . 
L 5 HOH B 29 629 4 HOH HOH . 
L 5 HOH B 30 630 35 HOH HOH . 
L 5 HOH B 31 631 15 HOH HOH . 
L 5 HOH B 32 632 70 HOH HOH . 
L 5 HOH B 33 633 11 HOH HOH . 
L 5 HOH B 34 634 18 HOH HOH . 
L 5 HOH B 35 635 31 HOH HOH . 
L 5 HOH B 36 636 52 HOH HOH . 
L 5 HOH B 37 637 87 HOH HOH . 
L 5 HOH B 38 638 2 HOH HOH . 
L 5 HOH B 39 639 34 HOH HOH . 
L 5 HOH B 40 640 76 HOH HOH . 
L 5 HOH B 41 641 37 HOH HOH . 
L 5 HOH B 42 642 32 HOH HOH . 
L 5 HOH B 43 643 53 HOH HOH . 
L 5 HOH B 44 644 27 HOH HOH . 
L 5 HOH B 45 645 55 HOH HOH . 
L 5 HOH B 46 646 71 HOH HOH . 
L 5 HOH B 47 647 47 HOH HOH . 
L 5 HOH B 48 648 97 HOH HOH . 
L 5 HOH B 49 649 29 HOH HOH . 
L 5 HOH B 50 650 45 HOH HOH . 
L 5 HOH B 51 651 25 HOH HOH . 
L 5 HOH B 52 652 98 HOH HOH . 
L 5 HOH B 53 653 75 HOH HOH . 
L 5 HOH B 54 654 48 HOH HOH . 
L 5 HOH B 55 655 56 HOH HOH . 
L 5 HOH B 56 656 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 0LI . . . F 2 -6.158 -29.092 -30.618 1 49.93 ? N1 0LI 501 B 1 
HETATM 2 N N3 0LI . . . F 2 5.41 -31.584 -20.372 1 60.25 ? N3 0LI 501 B 1 
HETATM 3 C C4 0LI . . . F 2 -3.133 -27.453 -27.664 1 59.82 ? C4 0LI 501 B 1 
HETATM 4 C C5 0LI . . . F 2 -2.016 -26.97 -26.911 1 57.32 ? C5 0LI 501 B 1 
HETATM 5 C C6 0LI . . . F 2 -1.66 -25.641 -26.822 1 60.48 ? C6 0LI 501 B 1 
HETATM 6 C C7 0LI . . . F 2 -0.547 -25.285 -26.059 1 61.3 ? C7 0LI 501 B 1 
HETATM 7 C C8 0LI . . . F 2 0.214 -26.248 -25.39 1 60.23 ? C8 0LI 501 B 1 
HETATM 8 C C10 0LI . . . F 2 -1.275 -27.947 -26.253 1 56.4 ? C10 0LI 501 B 1 
HETATM 9 C C13 0LI . . . F 2 2.635 -29.229 -23.957 1 54.11 ? C13 0LI 501 B 1 
HETATM 10 C C15 0LI . . . F 2 4.607 -29.392 -22.595 1 55.03 ? C15 0LI 501 B 1 
HETATM 11 C C17 0LI . . . F 2 3.494 -31.429 -23.267 1 57 ? C17 0LI 501 B 1 
HETATM 12 C C20 0LI . . . F 2 5.52 -31.486 -21.853 1 55.77 ? C20 0LI 501 B 1 
HETATM 13 C C21 0LI . . . F 2 6.805 -31.652 -19.898 1 58.17 ? C21 0LI 501 B 1 
HETATM 14 C C22 0LI . . . F 2 6.899 -31.768 -18.384 1 56 ? C22 0LI 501 B 1 
HETATM 15 C C24 0LI . . . F 2 4.743 -30.466 -19.666 1 62.61 ? C24 0LI 501 B 1 
HETATM 16 C C81 0LI . . . F 2 -8.289 -29.27 -29.479 1 51.86 ? C81 0LI 501 B 1 
HETATM 17 C C82 0LI . . . F 2 -8.918 -29.056 -28.251 1 56.29 ? C82 0LI 501 B 1 
HETATM 18 C C83 0LI . . . F 2 -8.133 -28.551 -27.207 1 54.59 ? C83 0LI 501 B 1 
HETATM 19 N N81 0LI . . . F 2 -6.755 -28.288 -27.457 1 52.46 ? N81 0LI 501 B 1 
HETATM 20 N N82 0LI . . . F 2 -6.313 -28.503 -28.532 1 55.56 ? N82 0LI 501 B 1 
HETATM 21 C C84 0LI . . . F 2 -6.993 -28.985 -29.584 1 50.79 ? C84 0LI 501 B 1 
HETATM 22 C C1 0LI . . . F 2 -4.959 -28.682 -30.225 1 57.74 ? C1 0LI 501 B 1 
HETATM 23 C C2 0LI . . . F 2 -5.067 -28.329 -28.958 1 54.53 ? C2 0LI 501 B 1 
HETATM 24 C C3 0LI . . . F 2 -3.967 -27.825 -28.211 1 55.39 ? C3 0LI 501 B 1 
HETATM 25 C C9 0LI . . . F 2 -0.15 -27.599 -25.495 1 55.66 ? C9 0LI 501 B 1 
HETATM 26 C C11 0LI . . . F 2 -2.403 -24.683 -27.48 1 60.47 ? C11 0LI 501 B 1 
HETATM 27 C C12 0LI . . . F 2 0.537 -28.625 -24.861 1 56.08 ? C12 0LI 501 B 1 
HETATM 28 O O1 0LI . . . F 2 -0.049 -29.677 -24.619 1 56 ? O1 0LI 501 B 1 
HETATM 29 N N2 0LI . . . F 2 1.822 -28.357 -24.581 1 55.54 ? N2 0LI 501 B 1 
HETATM 30 C C14 0LI . . . F 2 3.675 -28.618 -23.258 1 56.97 ? C14 0LI 501 B 1 
HETATM 31 C C16 0LI . . . F 2 4.521 -30.782 -22.561 1 56 ? C16 0LI 501 B 1 
HETATM 32 C C18 0LI . . . F 2 2.557 -30.642 -23.963 1 47.04 ? C18 0LI 501 B 1 
HETATM 33 C C19 0LI . . . F 2 3.364 -32.827 -23.298 1 68.41 ? C19 0LI 501 B 1 
HETATM 34 F F1 0LI . . . F 2 2.555 -32.985 -24.354 1 59.21 ? F1 0LI 501 B 1 
HETATM 35 F F2 0LI . . . F 2 4.244 -33.43 -23.625 1 67.77 ? F2 0LI 501 B 1 
HETATM 36 F F3 0LI . . . F 2 2.774 -33.27 -22.5 1 60.48 ? F3 0LI 501 B 1 
HETATM 37 C C23 0LI . . . F 2 4.793 -30.648 -18.174 1 59.17 ? C23 0LI 501 B 1 
HETATM 38 C C25 0LI . . . F 2 6.164 -30.771 -16.239 1 43.18 ? C25 0LI 501 B 1 
HETATM 39 N N4 0LI . . . F 2 6.186 -30.662 -17.712 1 55.9 ? N4 0LI 501 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           39 
#