data_6EGA # _model_server_result.job_id h2EIwB_HPXKJ6mAOBr-7RQ _model_server_result.datetime_utc '2024-11-04 22:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ega # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 6EGA # _exptl.entry_id 6EGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EGA _cell.length_a 84.629 _cell.length_b 84.629 _cell.length_c 429.041 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 1 3 A,C,D,E,F,G,H,M 2 1,4 B,I,J,K,L,N 2 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 71.506833 3 'crystal symmetry operation' 8_565 x-y,-y+1,-z 1 0 0 0 -1 0 0 0 -1 -42.3145 73.290864 0 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -42.3145 73.290864 71.506833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 138 A HIS 286 1_555 E CO CO . A CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 A NE2 HIS 158 A HIS 306 1_555 H CO CO . A CO 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A NE2 HIS 242 A HIS 390 1_555 F CO CO . A CO 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 G CO CO . A CO 505 8_665 B NE2 HIS 242 B HIS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 H CO CO . A CO 506 8_565 B NE2 HIS 158 B HIS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc6 B NE2 HIS 18 B HIS 166 1_555 L CO CO . B CO 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 B NE2 HIS 18 B HIS 166 1_555 L CO CO . B CO 504 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc8 B NE2 HIS 138 B HIS 286 1_555 K CO CO . B CO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 B NE2 HIS 138 B HIS 286 1_555 K CO CO . B CO 503 10_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EGA _atom_sites.fract_transf_matrix[1][1] 0.011816 _atom_sites.fract_transf_matrix[1][2] 0.006822 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J8A A 1 501 2 J8A DRG . D 3 SO4 A 1 502 1 SO4 SO4 . E 4 CO A 1 503 1 CO CO . F 4 CO A 1 504 2 CO CO . G 4 CO A 1 505 4 CO CO . H 4 CO A 1 506 6 CO CO . I 2 J8A B 1 501 3 J8A DRG . J 3 SO4 B 1 502 2 SO4 SO4 . K 4 CO B 1 503 3 CO CO . L 4 CO B 1 504 5 CO CO . M 5 HOH A 1 601 23 HOH HOH . M 5 HOH A 2 602 70 HOH HOH . M 5 HOH A 3 603 68 HOH HOH . M 5 HOH A 4 604 24 HOH HOH . M 5 HOH A 5 605 10 HOH HOH . M 5 HOH A 6 606 51 HOH HOH . M 5 HOH A 7 607 64 HOH HOH . M 5 HOH A 8 608 9 HOH HOH . M 5 HOH A 9 609 8 HOH HOH . M 5 HOH A 10 610 38 HOH HOH . M 5 HOH A 11 611 7 HOH HOH . M 5 HOH A 12 612 32 HOH HOH . M 5 HOH A 13 613 11 HOH HOH . M 5 HOH A 14 614 25 HOH HOH . M 5 HOH A 15 615 2 HOH HOH . M 5 HOH A 16 616 15 HOH HOH . M 5 HOH A 17 617 49 HOH HOH . M 5 HOH A 18 618 3 HOH HOH . M 5 HOH A 19 619 13 HOH HOH . M 5 HOH A 20 620 72 HOH HOH . M 5 HOH A 21 621 39 HOH HOH . M 5 HOH A 22 622 67 HOH HOH . M 5 HOH A 23 623 43 HOH HOH . M 5 HOH A 24 624 46 HOH HOH . M 5 HOH A 25 625 50 HOH HOH . N 5 HOH B 1 601 18 HOH HOH . N 5 HOH B 2 602 63 HOH HOH . N 5 HOH B 3 603 69 HOH HOH . N 5 HOH B 4 604 14 HOH HOH . N 5 HOH B 5 605 20 HOH HOH . N 5 HOH B 6 606 71 HOH HOH . N 5 HOH B 7 607 1 HOH HOH . N 5 HOH B 8 608 4 HOH HOH . N 5 HOH B 9 609 55 HOH HOH . N 5 HOH B 10 610 65 HOH HOH . N 5 HOH B 11 611 6 HOH HOH . N 5 HOH B 12 612 58 HOH HOH . N 5 HOH B 13 613 56 HOH HOH . N 5 HOH B 14 614 26 HOH HOH . N 5 HOH B 15 615 45 HOH HOH . N 5 HOH B 16 616 62 HOH HOH . N 5 HOH B 17 617 34 HOH HOH . N 5 HOH B 18 618 57 HOH HOH . N 5 HOH B 19 619 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.744 _atom_site.Cartn_y 40.681 _atom_site.Cartn_z 20.908 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 110.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 506 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #