data_6EGF # _model_server_result.job_id emdrdmhpFciKaYXSR72iUQ _model_server_result.datetime_utc '2024-12-04 06:17:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6egf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6EGF # _exptl.entry_id 6EGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EGF _cell.length_a 135.195 _cell.length_b 135.195 _cell.length_c 126.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 158 B ASN 316 1_555 E MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A OD2 ASP 171 B ASP 329 1_555 E MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc3 B O1G ANP . B ANP 501 1_555 E MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 B O2B ANP . B ANP 501 1_555 E MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 B O2A ANP . B ANP 501 1_555 E MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6EGF _atom_sites.fract_transf_matrix[1][1] 0.007397 _atom_sites.fract_transf_matrix[1][2] 0.004271 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP B 1 501 1 ANP ANP . C 3 SO4 B 1 502 2 SO4 SO4 . D 3 SO4 B 1 503 3 SO4 SO4 . E 4 MG B 1 504 1 MG MG . F 5 HOH B 1 601 2 HOH HOH . F 5 HOH B 2 602 4 HOH HOH . F 5 HOH B 3 603 3 HOH HOH . F 5 HOH B 4 604 12 HOH HOH . F 5 HOH B 5 605 18 HOH HOH . F 5 HOH B 6 606 20 HOH HOH . F 5 HOH B 7 607 45 HOH HOH . F 5 HOH B 8 608 1 HOH HOH . F 5 HOH B 9 609 9 HOH HOH . F 5 HOH B 10 610 13 HOH HOH . F 5 HOH B 11 611 25 HOH HOH . F 5 HOH B 12 612 6 HOH HOH . F 5 HOH B 13 613 46 HOH HOH . F 5 HOH B 14 614 28 HOH HOH . F 5 HOH B 15 615 29 HOH HOH . F 5 HOH B 16 616 10 HOH HOH . F 5 HOH B 17 617 50 HOH HOH . F 5 HOH B 18 618 31 HOH HOH . F 5 HOH B 19 619 30 HOH HOH . F 5 HOH B 20 620 17 HOH HOH . F 5 HOH B 21 621 22 HOH HOH . F 5 HOH B 22 622 33 HOH HOH . F 5 HOH B 23 623 19 HOH HOH . F 5 HOH B 24 624 11 HOH HOH . F 5 HOH B 25 625 14 HOH HOH . F 5 HOH B 26 626 26 HOH HOH . F 5 HOH B 27 627 48 HOH HOH . F 5 HOH B 28 628 7 HOH HOH . F 5 HOH B 29 629 5 HOH HOH . F 5 HOH B 30 630 42 HOH HOH . F 5 HOH B 31 631 21 HOH HOH . F 5 HOH B 32 632 36 HOH HOH . F 5 HOH B 33 633 44 HOH HOH . F 5 HOH B 34 634 32 HOH HOH . F 5 HOH B 35 635 39 HOH HOH . F 5 HOH B 36 636 51 HOH HOH . F 5 HOH B 37 637 38 HOH HOH . F 5 HOH B 38 638 27 HOH HOH . F 5 HOH B 39 639 40 HOH HOH . F 5 HOH B 40 640 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 67.035 -10.186 -10.288 1 76.61 ? PG ANP 501 B 1 HETATM 2 O O1G ANP . . . B 2 66.59 -11.622 -10.784 1 97.17 ? O1G ANP 501 B 1 HETATM 3 O O2G ANP . . . B 2 66.031 -9.692 -9.178 1 72.07 ? O2G ANP 501 B 1 HETATM 4 O O3G ANP . . . B 2 68.419 -10.26 -9.723 1 66.16 ? O3G ANP 501 B 1 HETATM 5 P PB ANP . . . B 2 67.064 -9.888 -13.057 1 80.88 ? PB ANP 501 B 1 HETATM 6 O O1B ANP . . . B 2 66.39 -8.989 -14.132 1 78.34 ? O1B ANP 501 B 1 HETATM 7 O O2B ANP . . . B 2 66.303 -11.17 -12.967 1 77.39 ? O2B ANP 501 B 1 HETATM 8 N N3B ANP . . . B 2 67.012 -9.093 -11.58 1 84.58 ? N3B ANP 501 B 1 HETATM 9 P PA ANP . . . B 2 69.334 -11.498 -13.204 1 74.58 ? PA ANP 501 B 1 HETATM 10 O O1A ANP . . . B 2 70.688 -11.118 -12.598 1 83.96 ? O1A ANP 501 B 1 HETATM 11 O O2A ANP . . . B 2 68.581 -12.442 -12.346 1 54.01 ? O2A ANP 501 B 1 HETATM 12 O O3A ANP . . . B 2 68.554 -10.132 -13.464 1 73.17 ? O3A ANP 501 B 1 HETATM 13 O O5' ANP . . . B 2 69.522 -12.148 -14.632 1 73.59 ? O5' ANP 501 B 1 HETATM 14 C C5' ANP . . . B 2 70.135 -11.419 -15.719 1 70.21 ? C5' ANP 501 B 1 HETATM 15 C C4' ANP . . . B 2 69.397 -11.701 -17.007 1 73.47 ? C4' ANP 501 B 1 HETATM 16 O O4' ANP . . . B 2 69.637 -13.066 -17.419 1 72.71 ? O4' ANP 501 B 1 HETATM 17 C C3' ANP . . . B 2 67.879 -11.539 -16.953 1 75.39 ? C3' ANP 501 B 1 HETATM 18 O O3' ANP . . . B 2 67.376 -11.048 -18.19 1 74.02 ? O3' ANP 501 B 1 HETATM 19 C C2' ANP . . . B 2 67.396 -12.962 -16.672 1 71.45 ? C2' ANP 501 B 1 HETATM 20 O O2' ANP . . . B 2 66.08 -13.179 -17.167 1 71.25 ? O2' ANP 501 B 1 HETATM 21 C C1' ANP . . . B 2 68.424 -13.794 -17.443 1 68.69 ? C1' ANP 501 B 1 HETATM 22 N N9 ANP . . . B 2 68.672 -15.11 -16.864 1 75.83 ? N9 ANP 501 B 1 HETATM 23 C C8 ANP . . . B 2 68.898 -15.404 -15.545 1 72.21 ? C8 ANP 501 B 1 HETATM 24 N N7 ANP . . . B 2 69.096 -16.678 -15.307 1 71.05 ? N7 ANP 501 B 1 HETATM 25 C C5 ANP . . . B 2 69 -17.264 -16.561 1 75.11 ? C5 ANP 501 B 1 HETATM 26 C C6 ANP . . . B 2 69.113 -18.599 -16.995 1 69.95 ? C6 ANP 501 B 1 HETATM 27 N N6 ANP . . . B 2 69.357 -19.628 -16.18 1 59.16 ? N6 ANP 501 B 1 HETATM 28 N N1 ANP . . . B 2 68.959 -18.844 -18.316 1 68.84 ? N1 ANP 501 B 1 HETATM 29 C C2 ANP . . . B 2 68.711 -17.819 -19.136 1 62.31 ? C2 ANP 501 B 1 HETATM 30 N N3 ANP . . . B 2 68.583 -16.523 -18.842 1 70.58 ? N3 ANP 501 B 1 HETATM 31 C C4 ANP . . . B 2 68.738 -16.31 -17.529 1 77.65 ? C4 ANP 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #