data_6EH2
#
_model_server_result.job_id            9sl87Ze2lNpQ5gQEBh2odw 
_model_server_result.datetime_utc      '2024-12-03 09:57:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6eh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6EH2 
#
_exptl.entry_id    6EH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6EH2 
_cell.length_a            59.014 
_cell.length_b            73.158 
_cell.length_c            109.504 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 276 n n 
C1 H11 MPD sing 277 n n 
C1 H12 MPD sing 278 n n 
C1 H13 MPD sing 279 n n 
C2 O2 MPD sing 280 n n 
C2 CM MPD sing 281 n n 
C2 C3 MPD sing 282 n n 
O2 HO2 MPD sing 283 n n 
CM HM1 MPD sing 284 n n 
CM HM2 MPD sing 285 n n 
CM HM3 MPD sing 286 n n 
C3 C4 MPD sing 287 n n 
C3 H31 MPD sing 288 n n 
C3 H32 MPD sing 289 n n 
C4 O4 MPD sing 290 n n 
C4 C5 MPD sing 291 n n 
C4 H4 MPD sing 292 n n 
O4 HO4 MPD sing 293 n n 
C5 H51 MPD sing 294 n n 
C5 H52 MPD sing 295 n n 
C5 H53 MPD sing 296 n n 
#
_atom_sites.entry_id                     6EH2 
_atom_sites.fract_transf_matrix[1][1]    0.016945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AMP A 1 401 1 AMP AMP . 
D 4 MPD A 1 402 1 MPD MPD . 
E 5 HOH A 1 501 135 HOH HOH . 
E 5 HOH A 2 502 38 HOH HOH . 
E 5 HOH A 3 503 165 HOH HOH . 
E 5 HOH A 4 504 204 HOH HOH . 
E 5 HOH A 5 505 117 HOH HOH . 
E 5 HOH A 6 506 92 HOH HOH . 
E 5 HOH A 7 507 61 HOH HOH . 
E 5 HOH A 8 508 114 HOH HOH . 
E 5 HOH A 9 509 130 HOH HOH . 
E 5 HOH A 10 510 167 HOH HOH . 
E 5 HOH A 11 511 123 HOH HOH . 
E 5 HOH A 12 512 72 HOH HOH . 
E 5 HOH A 13 513 32 HOH HOH . 
E 5 HOH A 14 514 82 HOH HOH . 
E 5 HOH A 15 515 166 HOH HOH . 
E 5 HOH A 16 516 138 HOH HOH . 
E 5 HOH A 17 517 57 HOH HOH . 
E 5 HOH A 18 518 151 HOH HOH . 
E 5 HOH A 19 519 4 HOH HOH . 
E 5 HOH A 20 520 159 HOH HOH . 
E 5 HOH A 21 521 95 HOH HOH . 
E 5 HOH A 22 522 26 HOH HOH . 
E 5 HOH A 23 523 141 HOH HOH . 
E 5 HOH A 24 524 64 HOH HOH . 
E 5 HOH A 25 525 37 HOH HOH . 
E 5 HOH A 26 526 54 HOH HOH . 
E 5 HOH A 27 527 189 HOH HOH . 
E 5 HOH A 28 528 65 HOH HOH . 
E 5 HOH A 29 529 91 HOH HOH . 
E 5 HOH A 30 530 78 HOH HOH . 
E 5 HOH A 31 531 5 HOH HOH . 
E 5 HOH A 32 532 169 HOH HOH . 
E 5 HOH A 33 533 83 HOH HOH . 
E 5 HOH A 34 534 48 HOH HOH . 
E 5 HOH A 35 535 68 HOH HOH . 
E 5 HOH A 36 536 162 HOH HOH . 
E 5 HOH A 37 537 47 HOH HOH . 
E 5 HOH A 38 538 18 HOH HOH . 
E 5 HOH A 39 539 134 HOH HOH . 
E 5 HOH A 40 540 31 HOH HOH . 
E 5 HOH A 41 541 28 HOH HOH . 
E 5 HOH A 42 542 105 HOH HOH . 
E 5 HOH A 43 543 145 HOH HOH . 
E 5 HOH A 44 544 181 HOH HOH . 
E 5 HOH A 45 545 11 HOH HOH . 
E 5 HOH A 46 546 12 HOH HOH . 
E 5 HOH A 47 547 122 HOH HOH . 
E 5 HOH A 48 548 110 HOH HOH . 
E 5 HOH A 49 549 86 HOH HOH . 
E 5 HOH A 50 550 74 HOH HOH . 
E 5 HOH A 51 551 81 HOH HOH . 
E 5 HOH A 52 552 27 HOH HOH . 
E 5 HOH A 53 553 7 HOH HOH . 
E 5 HOH A 54 554 10 HOH HOH . 
E 5 HOH A 55 555 62 HOH HOH . 
E 5 HOH A 56 556 187 HOH HOH . 
E 5 HOH A 57 557 8 HOH HOH . 
E 5 HOH A 58 558 16 HOH HOH . 
E 5 HOH A 59 559 116 HOH HOH . 
E 5 HOH A 60 560 106 HOH HOH . 
E 5 HOH A 61 561 6 HOH HOH . 
E 5 HOH A 62 562 88 HOH HOH . 
E 5 HOH A 63 563 35 HOH HOH . 
E 5 HOH A 64 564 40 HOH HOH . 
E 5 HOH A 65 565 14 HOH HOH . 
E 5 HOH A 66 566 33 HOH HOH . 
E 5 HOH A 67 567 30 HOH HOH . 
E 5 HOH A 68 568 56 HOH HOH . 
E 5 HOH A 69 569 45 HOH HOH . 
E 5 HOH A 70 570 146 HOH HOH . 
E 5 HOH A 71 571 101 HOH HOH . 
E 5 HOH A 72 572 2 HOH HOH . 
E 5 HOH A 73 573 9 HOH HOH . 
E 5 HOH A 74 574 21 HOH HOH . 
E 5 HOH A 75 575 17 HOH HOH . 
E 5 HOH A 76 576 121 HOH HOH . 
E 5 HOH A 77 577 80 HOH HOH . 
E 5 HOH A 78 578 59 HOH HOH . 
E 5 HOH A 79 579 50 HOH HOH . 
E 5 HOH A 80 580 73 HOH HOH . 
E 5 HOH A 81 581 119 HOH HOH . 
E 5 HOH A 82 582 155 HOH HOH . 
E 5 HOH A 83 583 150 HOH HOH . 
E 5 HOH A 84 584 87 HOH HOH . 
E 5 HOH A 85 585 42 HOH HOH . 
E 5 HOH A 86 586 197 HOH HOH . 
E 5 HOH A 87 587 46 HOH HOH . 
E 5 HOH A 88 588 69 HOH HOH . 
E 5 HOH A 89 589 98 HOH HOH . 
E 5 HOH A 90 590 180 HOH HOH . 
E 5 HOH A 91 591 1 HOH HOH . 
E 5 HOH A 92 592 154 HOH HOH . 
E 5 HOH A 93 593 190 HOH HOH . 
E 5 HOH A 94 594 171 HOH HOH . 
E 5 HOH A 95 595 163 HOH HOH . 
E 5 HOH A 96 596 158 HOH HOH . 
E 5 HOH A 97 597 178 HOH HOH . 
E 5 HOH A 98 598 107 HOH HOH . 
E 5 HOH A 99 599 84 HOH HOH . 
E 5 HOH A 100 600 55 HOH HOH . 
E 5 HOH A 101 601 139 HOH HOH . 
E 5 HOH A 102 602 29 HOH HOH . 
E 5 HOH A 103 603 15 HOH HOH . 
E 5 HOH A 104 604 22 HOH HOH . 
E 5 HOH A 105 605 89 HOH HOH . 
E 5 HOH A 106 606 124 HOH HOH . 
E 5 HOH A 107 607 199 HOH HOH . 
E 5 HOH A 108 608 52 HOH HOH . 
E 5 HOH A 109 609 191 HOH HOH . 
E 5 HOH A 110 610 93 HOH HOH . 
E 5 HOH A 111 611 39 HOH HOH . 
E 5 HOH A 112 612 36 HOH HOH . 
E 5 HOH A 113 613 108 HOH HOH . 
E 5 HOH A 114 614 19 HOH HOH . 
E 5 HOH A 115 615 71 HOH HOH . 
E 5 HOH A 116 616 201 HOH HOH . 
E 5 HOH A 117 617 67 HOH HOH . 
E 5 HOH A 118 618 206 HOH HOH . 
E 5 HOH A 119 619 132 HOH HOH . 
E 5 HOH A 120 620 127 HOH HOH . 
E 5 HOH A 121 621 96 HOH HOH . 
E 5 HOH A 122 622 94 HOH HOH . 
E 5 HOH A 123 623 44 HOH HOH . 
E 5 HOH A 124 624 25 HOH HOH . 
E 5 HOH A 125 625 164 HOH HOH . 
E 5 HOH A 126 626 160 HOH HOH . 
E 5 HOH A 127 627 20 HOH HOH . 
E 5 HOH A 128 628 161 HOH HOH . 
E 5 HOH A 129 629 97 HOH HOH . 
E 5 HOH A 130 630 143 HOH HOH . 
E 5 HOH A 131 631 149 HOH HOH . 
E 5 HOH A 132 632 133 HOH HOH . 
E 5 HOH A 133 633 129 HOH HOH . 
E 5 HOH A 134 634 185 HOH HOH . 
E 5 HOH A 135 635 66 HOH HOH . 
E 5 HOH A 136 636 41 HOH HOH . 
E 5 HOH A 137 637 152 HOH HOH . 
E 5 HOH A 138 638 13 HOH HOH . 
E 5 HOH A 139 639 172 HOH HOH . 
E 5 HOH A 140 640 115 HOH HOH . 
E 5 HOH A 141 641 49 HOH HOH . 
E 5 HOH A 142 642 131 HOH HOH . 
E 5 HOH A 143 643 125 HOH HOH . 
E 5 HOH A 144 644 53 HOH HOH . 
E 5 HOH A 145 645 63 HOH HOH . 
E 5 HOH A 146 646 43 HOH HOH . 
E 5 HOH A 147 647 113 HOH HOH . 
E 5 HOH A 148 648 112 HOH HOH . 
E 5 HOH A 149 649 148 HOH HOH . 
E 5 HOH A 150 650 157 HOH HOH . 
E 5 HOH A 151 651 120 HOH HOH . 
E 5 HOH A 152 652 175 HOH HOH . 
E 5 HOH A 153 653 77 HOH HOH . 
E 5 HOH A 154 654 203 HOH HOH . 
E 5 HOH A 155 655 76 HOH HOH . 
E 5 HOH A 156 656 58 HOH HOH . 
E 5 HOH A 157 657 118 HOH HOH . 
E 5 HOH A 158 658 100 HOH HOH . 
E 5 HOH A 159 659 128 HOH HOH . 
E 5 HOH A 160 660 184 HOH HOH . 
E 5 HOH A 161 661 90 HOH HOH . 
E 5 HOH A 162 662 144 HOH HOH . 
E 5 HOH A 163 663 137 HOH HOH . 
E 5 HOH A 164 664 85 HOH HOH . 
E 5 HOH A 165 665 103 HOH HOH . 
E 5 HOH A 166 666 205 HOH HOH . 
E 5 HOH A 167 667 111 HOH HOH . 
E 5 HOH A 168 668 60 HOH HOH . 
E 5 HOH A 169 669 182 HOH HOH . 
E 5 HOH A 170 670 200 HOH HOH . 
E 5 HOH A 171 671 188 HOH HOH . 
E 5 HOH A 172 672 183 HOH HOH . 
F 5 HOH B 1 101 168 HOH HOH . 
F 5 HOH B 2 102 156 HOH HOH . 
F 5 HOH B 3 103 136 HOH HOH . 
F 5 HOH B 4 104 198 HOH HOH . 
F 5 HOH B 5 105 109 HOH HOH . 
F 5 HOH B 6 106 34 HOH HOH . 
F 5 HOH B 7 107 3 HOH HOH . 
F 5 HOH B 8 108 75 HOH HOH . 
F 5 HOH B 9 109 102 HOH HOH . 
F 5 HOH B 10 110 99 HOH HOH . 
F 5 HOH B 11 111 23 HOH HOH . 
F 5 HOH B 12 112 140 HOH HOH . 
F 5 HOH B 13 113 147 HOH HOH . 
F 5 HOH B 14 114 79 HOH HOH . 
F 5 HOH B 15 115 170 HOH HOH . 
F 5 HOH B 16 116 70 HOH HOH . 
F 5 HOH B 17 117 126 HOH HOH . 
F 5 HOH B 18 118 202 HOH HOH . 
F 5 HOH B 19 119 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 -10.395 -16.429 3.477 0.82 39.5 ? C1 MPD 402 A 1 
HETATM 2 C C2 MPD . . . D 4 -10.898 -14.995 3.392 0.82 39.52 ? C2 MPD 402 A 1 
HETATM 3 O O2 MPD . . . D 4 -9.95 -14.29 2.56 0.82 35.85 ? O2 MPD 402 A 1 
HETATM 4 C CM MPD . . . D 4 -12.248 -14.915 2.686 0.82 37.71 ? CM MPD 402 A 1 
HETATM 5 C C3 MPD . . . D 4 -10.965 -14.319 4.762 0.82 40.38 ? C3 MPD 402 A 1 
HETATM 6 C C4 MPD . . . D 4 -9.576 -14.147 5.398 0.82 43.45 ? C4 MPD 402 A 1 
HETATM 7 O O4 MPD . . . D 4 -8.741 -13.381 4.58 0.82 38.25 ? O4 MPD 402 A 1 
HETATM 8 C C5 MPD . . . D 4 -9.538 -13.529 6.776 0.82 29.27 ? C5 MPD 402 A 1 
HETATM 9 H H11 MPD . . . D 4 -10.184 -16.679 4.517 0.82 47.41 ? H11 MPD 402 A 1 
HETATM 10 H H12 MPD . . . D 4 -9.485 -16.531 2.887 0.82 47.41 ? H12 MPD 402 A 1 
HETATM 11 H H13 MPD . . . D 4 -11.157 -17.105 3.088 0.82 47.41 ? H13 MPD 402 A 1 
HETATM 12 H HO2 MPD . . . D 4 -9.568 -13.541 3.063 0.82 43.02 ? HO2 MPD 402 A 1 
HETATM 13 H HM1 MPD . . . D 4 -12.961 -14.39 3.323 0.82 45.25 ? HM1 MPD 402 A 1 
HETATM 14 H HM2 MPD . . . D 4 -12.135 -14.375 1.746 0.82 45.25 ? HM2 MPD 402 A 1 
HETATM 15 H HM3 MPD . . . D 4 -12.614 -15.922 2.485 0.82 45.25 ? HM3 MPD 402 A 1 
HETATM 16 H H31 MPD . . . D 4 -11.435 -13.342 4.657 0.82 48.45 ? H31 MPD 402 A 1 
HETATM 17 H H32 MPD . . . D 4 -11.591 -14.916 5.426 0.82 48.45 ? H32 MPD 402 A 1 
HETATM 18 H H4 MPD . . . D 4 -9.143 -15.143 5.485 0.82 52.14 ? H4 MPD 402 A 1 
HETATM 19 H HO4 MPD . . . D 4 -7.866 -13.816 4.507 0.82 45.9 ? HO4 MPD 402 A 1 
HETATM 20 H H51 MPD . . . D 4 -8.879 -12.661 6.767 0.82 35.13 ? H51 MPD 402 A 1 
HETATM 21 H H52 MPD . . . D 4 -10.543 -13.219 7.062 0.82 35.13 ? H52 MPD 402 A 1 
HETATM 22 H H53 MPD . . . D 4 -9.166 -14.261 7.492 0.82 35.13 ? H53 MPD 402 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#