data_6EHJ # _model_server_result.job_id YdJpsFGE6L_bP99vJlLfmg _model_server_result.datetime_utc '2024-11-26 10:56:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ehj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":505}' # _entry.id 6EHJ # _exptl.entry_id 6EHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EHJ _cell.length_a 80.25 _cell.length_b 177.54 _cell.length_c 58.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,BA 1 1 B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C2M MYA . A MYA 503 1_555 F N GLY . A GLY 504 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.473 ? covale ? covale2 F N GLY . A GLY 504 1_555 N C1 MYR . A MYR 512 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale3 S C1 MYR . B MYR 504 1_555 T N GLY . B GLY 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 206 n n N H GLY sing 207 n n N H2 GLY sing 208 n n CA C GLY sing 209 n n CA HA2 GLY sing 210 n n CA HA3 GLY sing 211 n n C O GLY doub 212 n n C OXT GLY sing 213 n n OXT HXT GLY sing 214 n n # _atom_sites.entry_id 6EHJ _atom_sites.fract_transf_matrix[1][1] 0.012461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 502 GOL GOL . D 2 GOL A 1 502 503 GOL GOL . E 3 MYA A 1 503 1497 MYA MYA . F 4 GLY A 1 504 1498 GLY GLY . G 5 SER A 1 505 1499 SER SER . H 6 ASN A 1 506 1500 ASN ASN . I 7 LYS A 1 507 1501 LYS LYS . J 5 SER A 1 508 1502 SER SER . K 7 LYS A 1 509 1503 LYS LYS . L 8 PRO A 1 510 1504 PRO PRO . M 7 LYS A 1 511 1505 LYS LYS . N 9 MYR A 1 512 1497 MYR MYR . O 10 COA A 1 513 1497 COA COA . P 2 GOL B 1 501 503 GOL GOL . Q 2 GOL B 1 502 504 GOL GOL . R 10 COA B 1 503 1496 COA COA . S 9 MYR B 1 504 1497 MYR MYR . T 4 GLY B 1 505 1498 GLY GLY . U 5 SER B 1 506 1499 SER SER . V 6 ASN B 1 507 1500 ASN ASN . W 7 LYS B 1 508 1501 LYS LYS . X 5 SER B 1 509 1502 SER SER . Y 7 LYS B 1 510 1503 LYS LYS . Z 8 PRO B 1 511 1504 PRO PRO . AA 7 LYS B 1 512 1505 LYS LYS . BA 11 HOH A 1 601 1 HOH HOH . BA 11 HOH A 2 602 2 HOH HOH . BA 11 HOH A 3 603 5 HOH HOH . BA 11 HOH A 4 604 4 HOH HOH . BA 11 HOH A 5 605 12 HOH HOH . BA 11 HOH A 6 606 8 HOH HOH . BA 11 HOH A 7 607 3 HOH HOH . BA 11 HOH A 8 608 6 HOH HOH . BA 11 HOH A 9 609 7 HOH HOH . BA 11 HOH A 10 610 10 HOH HOH . BA 11 HOH A 11 611 9 HOH HOH . BA 11 HOH A 12 612 19 HOH HOH . BA 11 HOH A 13 613 14 HOH HOH . BA 11 HOH A 14 614 11 HOH HOH . BA 11 HOH A 15 615 237 HOH HOH . BA 11 HOH A 16 616 16 HOH HOH . BA 11 HOH A 17 617 15 HOH HOH . BA 11 HOH A 18 618 45 HOH HOH . BA 11 HOH A 19 619 13 HOH HOH . BA 11 HOH A 20 620 18 HOH HOH . BA 11 HOH A 21 621 25 HOH HOH . BA 11 HOH A 22 622 17 HOH HOH . BA 11 HOH A 23 623 32 HOH HOH . BA 11 HOH A 24 624 20 HOH HOH . BA 11 HOH A 25 625 38 HOH HOH . BA 11 HOH A 26 626 29 HOH HOH . BA 11 HOH A 27 627 52 HOH HOH . BA 11 HOH A 28 628 44 HOH HOH . BA 11 HOH A 29 629 21 HOH HOH . BA 11 HOH A 30 630 30 HOH HOH . BA 11 HOH A 31 631 42 HOH HOH . BA 11 HOH A 32 632 39 HOH HOH . BA 11 HOH A 33 633 37 HOH HOH . BA 11 HOH A 34 634 35 HOH HOH . BA 11 HOH A 35 635 26 HOH HOH . BA 11 HOH A 36 636 27 HOH HOH . BA 11 HOH A 37 637 33 HOH HOH . BA 11 HOH A 38 638 23 HOH HOH . BA 11 HOH A 39 639 57 HOH HOH . BA 11 HOH A 40 640 49 HOH HOH . BA 11 HOH A 41 641 28 HOH HOH . BA 11 HOH A 42 642 46 HOH HOH . BA 11 HOH A 43 643 22 HOH HOH . BA 11 HOH A 44 644 36 HOH HOH . BA 11 HOH A 45 645 34 HOH HOH . BA 11 HOH A 46 646 82 HOH HOH . BA 11 HOH A 47 647 60 HOH HOH . BA 11 HOH A 48 648 64 HOH HOH . BA 11 HOH A 49 649 47 HOH HOH . BA 11 HOH A 50 650 56 HOH HOH . BA 11 HOH A 51 651 70 HOH HOH . BA 11 HOH A 52 652 69 HOH HOH . BA 11 HOH A 53 653 66 HOH HOH . BA 11 HOH A 54 654 24 HOH HOH . BA 11 HOH A 55 655 48 HOH HOH . BA 11 HOH A 56 656 53 HOH HOH . BA 11 HOH A 57 657 99 HOH HOH . BA 11 HOH A 58 658 31 HOH HOH . BA 11 HOH A 59 659 59 HOH HOH . BA 11 HOH A 60 660 51 HOH HOH . BA 11 HOH A 61 661 76 HOH HOH . BA 11 HOH A 62 662 63 HOH HOH . BA 11 HOH A 63 663 50 HOH HOH . BA 11 HOH A 64 664 80 HOH HOH . BA 11 HOH A 65 665 61 HOH HOH . BA 11 HOH A 66 666 68 HOH HOH . BA 11 HOH A 67 667 54 HOH HOH . BA 11 HOH A 68 668 72 HOH HOH . BA 11 HOH A 69 669 55 HOH HOH . BA 11 HOH A 70 670 65 HOH HOH . BA 11 HOH A 71 671 43 HOH HOH . BA 11 HOH A 72 672 62 HOH HOH . BA 11 HOH A 73 673 83 HOH HOH . BA 11 HOH A 74 674 73 HOH HOH . BA 11 HOH A 75 675 93 HOH HOH . BA 11 HOH A 76 676 81 HOH HOH . BA 11 HOH A 77 677 87 HOH HOH . BA 11 HOH A 78 678 40 HOH HOH . BA 11 HOH A 79 679 79 HOH HOH . BA 11 HOH A 80 680 77 HOH HOH . BA 11 HOH A 81 681 231 HOH HOH . BA 11 HOH A 82 682 67 HOH HOH . BA 11 HOH A 83 683 92 HOH HOH . BA 11 HOH A 84 684 75 HOH HOH . BA 11 HOH A 85 685 85 HOH HOH . BA 11 HOH A 86 686 88 HOH HOH . BA 11 HOH A 87 687 86 HOH HOH . BA 11 HOH A 88 688 74 HOH HOH . BA 11 HOH A 89 689 90 HOH HOH . BA 11 HOH A 90 690 97 HOH HOH . BA 11 HOH A 91 691 104 HOH HOH . BA 11 HOH A 92 692 100 HOH HOH . BA 11 HOH A 93 693 230 HOH HOH . BA 11 HOH A 94 694 71 HOH HOH . BA 11 HOH A 95 695 58 HOH HOH . BA 11 HOH A 96 696 112 HOH HOH . BA 11 HOH A 97 697 96 HOH HOH . BA 11 HOH A 98 698 78 HOH HOH . BA 11 HOH A 99 699 94 HOH HOH . BA 11 HOH A 100 700 84 HOH HOH . BA 11 HOH A 101 701 109 HOH HOH . BA 11 HOH A 102 702 98 HOH HOH . BA 11 HOH A 103 703 111 HOH HOH . BA 11 HOH A 104 704 102 HOH HOH . BA 11 HOH A 105 705 89 HOH HOH . BA 11 HOH A 106 706 107 HOH HOH . BA 11 HOH A 107 707 91 HOH HOH . BA 11 HOH A 108 708 110 HOH HOH . BA 11 HOH A 109 709 108 HOH HOH . BA 11 HOH A 110 710 103 HOH HOH . BA 11 HOH A 111 711 106 HOH HOH . BA 11 HOH A 112 712 101 HOH HOH . BA 11 HOH A 113 713 114 HOH HOH . BA 11 HOH A 114 714 105 HOH HOH . BA 11 HOH A 115 715 115 HOH HOH . BA 11 HOH A 116 716 113 HOH HOH . BA 11 HOH A 117 717 116 HOH HOH . BA 11 HOH A 118 718 95 HOH HOH . BA 11 HOH A 119 719 117 HOH HOH . BA 11 HOH A 120 720 119 HOH HOH . BA 11 HOH A 121 721 121 HOH HOH . BA 11 HOH A 122 722 123 HOH HOH . BA 11 HOH A 123 723 120 HOH HOH . BA 11 HOH A 124 724 118 HOH HOH . BA 11 HOH A 125 725 122 HOH HOH . BA 11 HOH A 126 726 124 HOH HOH . BA 11 HOH A 127 727 125 HOH HOH . BA 11 HOH A 128 728 126 HOH HOH . CA 11 HOH B 1 601 128 HOH HOH . CA 11 HOH B 2 602 127 HOH HOH . CA 11 HOH B 3 603 236 HOH HOH . CA 11 HOH B 4 604 131 HOH HOH . CA 11 HOH B 5 605 129 HOH HOH . CA 11 HOH B 6 606 135 HOH HOH . CA 11 HOH B 7 607 133 HOH HOH . CA 11 HOH B 8 608 132 HOH HOH . CA 11 HOH B 9 609 138 HOH HOH . CA 11 HOH B 10 610 130 HOH HOH . CA 11 HOH B 11 611 163 HOH HOH . CA 11 HOH B 12 612 134 HOH HOH . CA 11 HOH B 13 613 140 HOH HOH . CA 11 HOH B 14 614 155 HOH HOH . CA 11 HOH B 15 615 154 HOH HOH . CA 11 HOH B 16 616 141 HOH HOH . CA 11 HOH B 17 617 139 HOH HOH . CA 11 HOH B 18 618 144 HOH HOH . CA 11 HOH B 19 619 152 HOH HOH . CA 11 HOH B 20 620 41 HOH HOH . CA 11 HOH B 21 621 233 HOH HOH . CA 11 HOH B 22 622 137 HOH HOH . CA 11 HOH B 23 623 150 HOH HOH . CA 11 HOH B 24 624 171 HOH HOH . CA 11 HOH B 25 625 160 HOH HOH . CA 11 HOH B 26 626 136 HOH HOH . CA 11 HOH B 27 627 148 HOH HOH . CA 11 HOH B 28 628 158 HOH HOH . CA 11 HOH B 29 629 161 HOH HOH . CA 11 HOH B 30 630 143 HOH HOH . CA 11 HOH B 31 631 166 HOH HOH . CA 11 HOH B 32 632 153 HOH HOH . CA 11 HOH B 33 633 168 HOH HOH . CA 11 HOH B 34 634 142 HOH HOH . CA 11 HOH B 35 635 151 HOH HOH . CA 11 HOH B 36 636 170 HOH HOH . CA 11 HOH B 37 637 159 HOH HOH . CA 11 HOH B 38 638 149 HOH HOH . CA 11 HOH B 39 639 157 HOH HOH . CA 11 HOH B 40 640 234 HOH HOH . CA 11 HOH B 41 641 147 HOH HOH . CA 11 HOH B 42 642 145 HOH HOH . CA 11 HOH B 43 643 165 HOH HOH . CA 11 HOH B 44 644 146 HOH HOH . CA 11 HOH B 45 645 179 HOH HOH . CA 11 HOH B 46 646 162 HOH HOH . CA 11 HOH B 47 647 169 HOH HOH . CA 11 HOH B 48 648 172 HOH HOH . CA 11 HOH B 49 649 178 HOH HOH . CA 11 HOH B 50 650 232 HOH HOH . CA 11 HOH B 51 651 235 HOH HOH . CA 11 HOH B 52 652 173 HOH HOH . CA 11 HOH B 53 653 182 HOH HOH . CA 11 HOH B 54 654 174 HOH HOH . CA 11 HOH B 55 655 196 HOH HOH . CA 11 HOH B 56 656 189 HOH HOH . CA 11 HOH B 57 657 184 HOH HOH . CA 11 HOH B 58 658 156 HOH HOH . CA 11 HOH B 59 659 199 HOH HOH . CA 11 HOH B 60 660 164 HOH HOH . CA 11 HOH B 61 661 191 HOH HOH . CA 11 HOH B 62 662 185 HOH HOH . CA 11 HOH B 63 663 187 HOH HOH . CA 11 HOH B 64 664 195 HOH HOH . CA 11 HOH B 65 665 202 HOH HOH . CA 11 HOH B 66 666 190 HOH HOH . CA 11 HOH B 67 667 197 HOH HOH . CA 11 HOH B 68 668 204 HOH HOH . CA 11 HOH B 69 669 201 HOH HOH . CA 11 HOH B 70 670 180 HOH HOH . CA 11 HOH B 71 671 177 HOH HOH . CA 11 HOH B 72 672 175 HOH HOH . CA 11 HOH B 73 673 176 HOH HOH . CA 11 HOH B 74 674 193 HOH HOH . CA 11 HOH B 75 675 186 HOH HOH . CA 11 HOH B 76 676 183 HOH HOH . CA 11 HOH B 77 677 198 HOH HOH . CA 11 HOH B 78 678 167 HOH HOH . CA 11 HOH B 79 679 188 HOH HOH . CA 11 HOH B 80 680 208 HOH HOH . CA 11 HOH B 81 681 194 HOH HOH . CA 11 HOH B 82 682 206 HOH HOH . CA 11 HOH B 83 683 200 HOH HOH . CA 11 HOH B 84 684 213 HOH HOH . CA 11 HOH B 85 685 209 HOH HOH . CA 11 HOH B 86 686 210 HOH HOH . CA 11 HOH B 87 687 192 HOH HOH . CA 11 HOH B 88 688 181 HOH HOH . CA 11 HOH B 89 689 207 HOH HOH . CA 11 HOH B 90 690 203 HOH HOH . CA 11 HOH B 91 691 214 HOH HOH . CA 11 HOH B 92 692 205 HOH HOH . CA 11 HOH B 93 693 216 HOH HOH . CA 11 HOH B 94 694 212 HOH HOH . CA 11 HOH B 95 695 211 HOH HOH . CA 11 HOH B 96 696 222 HOH HOH . CA 11 HOH B 97 697 215 HOH HOH . CA 11 HOH B 98 698 217 HOH HOH . CA 11 HOH B 99 699 219 HOH HOH . CA 11 HOH B 100 700 220 HOH HOH . CA 11 HOH B 101 701 218 HOH HOH . CA 11 HOH B 102 702 221 HOH HOH . CA 11 HOH B 103 703 223 HOH HOH . CA 11 HOH B 104 704 225 HOH HOH . CA 11 HOH B 105 705 224 HOH HOH . CA 11 HOH B 106 706 227 HOH HOH . CA 11 HOH B 107 707 226 HOH HOH . CA 11 HOH B 108 708 228 HOH HOH . CA 11 HOH B 109 709 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . T 4 59.813 77.842 44.939 1 45.31 ? N GLY 505 B 1 HETATM 2 C CA GLY . . . T 4 58.82 78.268 43.978 1 31.28 ? CA GLY 505 B 1 HETATM 3 C C GLY . . . T 4 59.436 79.203 42.946 1 43.39 ? C GLY 505 B 1 HETATM 4 O O GLY . . . T 4 60.566 79.68 43.11 1 38.23 ? O GLY 505 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #