data_6EHK # _model_server_result.job_id 5qUUL4eYqD9_-QS-xjpofQ _model_server_result.datetime_utc '2024-11-06 13:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ehk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6EHK # _exptl.entry_id 6EHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.366 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methyl]ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.93 _cell.angle_gamma 90 _cell.entry_id 6EHK _cell.length_a 58.29 _cell.length_b 46.29 _cell.length_c 63.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 Cl2 N3' _chem_comp.formula_weight 424.366 _chem_comp.id AUW _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methyl]ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 AUW doub 95 n y C17 C16 AUW sing 96 n y C C1 AUW sing 97 n n C18 C19 AUW sing 98 n y N1 C16 AUW sing 99 n y N1 C15 AUW doub 100 n y C16 C21 AUW doub 101 n y C19 C20 AUW doub 102 n y C15 C14 AUW sing 103 n n C15 N2 AUW sing 104 n y C14 C13 AUW sing 105 n n C21 C20 AUW sing 106 n y C21 N2 AUW sing 107 n y C1 C2 AUW sing 108 n n C13 N AUW sing 109 n n N C12 AUW sing 110 n n C2 C3 AUW doub 111 n y C2 C7 AUW sing 112 n y C12 C11 AUW sing 113 n n C10 C11 AUW doub 114 n y C10 C9 AUW sing 115 n y CL C9 AUW sing 116 n n C11 C22 AUW sing 117 n y C9 C8 AUW doub 118 n y C3 C4 AUW sing 119 n y C22 C23 AUW doub 120 n y C8 C23 AUW sing 121 n y C8 C7 AUW sing 122 n n C23 CL1 AUW sing 123 n n C7 C6 AUW doub 124 n y C4 C5 AUW doub 125 n y C6 C5 AUW sing 126 n y C1 H1 AUW sing 127 n n C1 H2 AUW sing 128 n n C6 H3 AUW sing 129 n n C5 H4 AUW sing 130 n n C4 H5 AUW sing 131 n n C3 H6 AUW sing 132 n n C H7 AUW sing 133 n n C H8 AUW sing 134 n n C H9 AUW sing 135 n n C22 H10 AUW sing 136 n n C10 H11 AUW sing 137 n n C12 H12 AUW sing 138 n n C12 H13 AUW sing 139 n n N H14 AUW sing 140 n n C13 H16 AUW sing 141 n n C13 H17 AUW sing 142 n n C14 H18 AUW sing 143 n n C14 H19 AUW sing 144 n n N2 H20 AUW sing 145 n n C20 H22 AUW sing 146 n n C19 H23 AUW sing 147 n n C18 H24 AUW sing 148 n n C17 H25 AUW sing 149 n n # _atom_sites.entry_id 6EHK _atom_sites.fract_transf_matrix[1][1] 0.017156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 3 AUW A 1 403 1 AUW 168 . E 4 54G A 1 404 1 54G 730 . F 5 HOH A 1 501 113 HOH HOH . F 5 HOH A 2 502 88 HOH HOH . F 5 HOH A 3 503 42 HOH HOH . F 5 HOH A 4 504 108 HOH HOH . F 5 HOH A 5 505 36 HOH HOH . F 5 HOH A 6 506 104 HOH HOH . F 5 HOH A 7 507 109 HOH HOH . F 5 HOH A 8 508 37 HOH HOH . F 5 HOH A 9 509 11 HOH HOH . F 5 HOH A 10 510 223 HOH HOH . F 5 HOH A 11 511 54 HOH HOH . F 5 HOH A 12 512 150 HOH HOH . F 5 HOH A 13 513 35 HOH HOH . F 5 HOH A 14 514 166 HOH HOH . F 5 HOH A 15 515 178 HOH HOH . F 5 HOH A 16 516 27 HOH HOH . F 5 HOH A 17 517 177 HOH HOH . F 5 HOH A 18 518 50 HOH HOH . F 5 HOH A 19 519 191 HOH HOH . F 5 HOH A 20 520 222 HOH HOH . F 5 HOH A 21 521 123 HOH HOH . F 5 HOH A 22 522 118 HOH HOH . F 5 HOH A 23 523 146 HOH HOH . F 5 HOH A 24 524 173 HOH HOH . F 5 HOH A 25 525 61 HOH HOH . F 5 HOH A 26 526 205 HOH HOH . F 5 HOH A 27 527 134 HOH HOH . F 5 HOH A 28 528 136 HOH HOH . F 5 HOH A 29 529 23 HOH HOH . F 5 HOH A 30 530 228 HOH HOH . F 5 HOH A 31 531 12 HOH HOH . F 5 HOH A 32 532 119 HOH HOH . F 5 HOH A 33 533 143 HOH HOH . F 5 HOH A 34 534 105 HOH HOH . F 5 HOH A 35 535 15 HOH HOH . F 5 HOH A 36 536 57 HOH HOH . F 5 HOH A 37 537 220 HOH HOH . F 5 HOH A 38 538 137 HOH HOH . F 5 HOH A 39 539 148 HOH HOH . F 5 HOH A 40 540 127 HOH HOH . F 5 HOH A 41 541 199 HOH HOH . F 5 HOH A 42 542 126 HOH HOH . F 5 HOH A 43 543 121 HOH HOH . F 5 HOH A 44 544 142 HOH HOH . F 5 HOH A 45 545 152 HOH HOH . F 5 HOH A 46 546 165 HOH HOH . F 5 HOH A 47 547 25 HOH HOH . F 5 HOH A 48 548 10 HOH HOH . F 5 HOH A 49 549 24 HOH HOH . F 5 HOH A 50 550 154 HOH HOH . F 5 HOH A 51 551 2 HOH HOH . F 5 HOH A 52 552 58 HOH HOH . F 5 HOH A 53 553 124 HOH HOH . F 5 HOH A 54 554 115 HOH HOH . F 5 HOH A 55 555 83 HOH HOH . F 5 HOH A 56 556 157 HOH HOH . F 5 HOH A 57 557 187 HOH HOH . F 5 HOH A 58 558 194 HOH HOH . F 5 HOH A 59 559 53 HOH HOH . F 5 HOH A 60 560 153 HOH HOH . F 5 HOH A 61 561 49 HOH HOH . F 5 HOH A 62 562 40 HOH HOH . F 5 HOH A 63 563 94 HOH HOH . F 5 HOH A 64 564 144 HOH HOH . F 5 HOH A 65 565 179 HOH HOH . F 5 HOH A 66 566 212 HOH HOH . F 5 HOH A 67 567 100 HOH HOH . F 5 HOH A 68 568 22 HOH HOH . F 5 HOH A 69 569 71 HOH HOH . F 5 HOH A 70 570 181 HOH HOH . F 5 HOH A 71 571 213 HOH HOH . F 5 HOH A 72 572 186 HOH HOH . F 5 HOH A 73 573 221 HOH HOH . F 5 HOH A 74 574 120 HOH HOH . F 5 HOH A 75 575 18 HOH HOH . F 5 HOH A 76 576 156 HOH HOH . F 5 HOH A 77 577 6 HOH HOH . F 5 HOH A 78 578 92 HOH HOH . F 5 HOH A 79 579 112 HOH HOH . F 5 HOH A 80 580 209 HOH HOH . F 5 HOH A 81 581 96 HOH HOH . F 5 HOH A 82 582 85 HOH HOH . F 5 HOH A 83 583 5 HOH HOH . F 5 HOH A 84 584 200 HOH HOH . F 5 HOH A 85 585 8 HOH HOH . F 5 HOH A 86 586 111 HOH HOH . F 5 HOH A 87 587 14 HOH HOH . F 5 HOH A 88 588 149 HOH HOH . F 5 HOH A 89 589 45 HOH HOH . F 5 HOH A 90 590 26 HOH HOH . F 5 HOH A 91 591 77 HOH HOH . F 5 HOH A 92 592 160 HOH HOH . F 5 HOH A 93 593 76 HOH HOH . F 5 HOH A 94 594 20 HOH HOH . F 5 HOH A 95 595 190 HOH HOH . F 5 HOH A 96 596 125 HOH HOH . F 5 HOH A 97 597 110 HOH HOH . F 5 HOH A 98 598 214 HOH HOH . F 5 HOH A 99 599 60 HOH HOH . F 5 HOH A 100 600 4 HOH HOH . F 5 HOH A 101 601 129 HOH HOH . F 5 HOH A 102 602 169 HOH HOH . F 5 HOH A 103 603 203 HOH HOH . F 5 HOH A 104 604 225 HOH HOH . F 5 HOH A 105 605 197 HOH HOH . F 5 HOH A 106 606 176 HOH HOH . F 5 HOH A 107 607 106 HOH HOH . F 5 HOH A 108 608 33 HOH HOH . F 5 HOH A 109 609 7 HOH HOH . F 5 HOH A 110 610 155 HOH HOH . F 5 HOH A 111 611 140 HOH HOH . F 5 HOH A 112 612 98 HOH HOH . F 5 HOH A 113 613 28 HOH HOH . F 5 HOH A 114 614 204 HOH HOH . F 5 HOH A 115 615 192 HOH HOH . F 5 HOH A 116 616 224 HOH HOH . F 5 HOH A 117 617 131 HOH HOH . F 5 HOH A 118 618 34 HOH HOH . F 5 HOH A 119 619 46 HOH HOH . F 5 HOH A 120 620 189 HOH HOH . F 5 HOH A 121 621 162 HOH HOH . F 5 HOH A 122 622 13 HOH HOH . F 5 HOH A 123 623 51 HOH HOH . F 5 HOH A 124 624 21 HOH HOH . F 5 HOH A 125 625 44 HOH HOH . F 5 HOH A 126 626 41 HOH HOH . F 5 HOH A 127 627 30 HOH HOH . F 5 HOH A 128 628 82 HOH HOH . F 5 HOH A 129 629 78 HOH HOH . F 5 HOH A 130 630 114 HOH HOH . F 5 HOH A 131 631 38 HOH HOH . F 5 HOH A 132 632 29 HOH HOH . F 5 HOH A 133 633 210 HOH HOH . F 5 HOH A 134 634 72 HOH HOH . F 5 HOH A 135 635 68 HOH HOH . F 5 HOH A 136 636 217 HOH HOH . F 5 HOH A 137 637 226 HOH HOH . F 5 HOH A 138 638 219 HOH HOH . F 5 HOH A 139 639 9 HOH HOH . F 5 HOH A 140 640 1 HOH HOH . F 5 HOH A 141 641 62 HOH HOH . F 5 HOH A 142 642 70 HOH HOH . F 5 HOH A 143 643 99 HOH HOH . F 5 HOH A 144 644 65 HOH HOH . F 5 HOH A 145 645 47 HOH HOH . F 5 HOH A 146 646 211 HOH HOH . F 5 HOH A 147 647 215 HOH HOH . F 5 HOH A 148 648 31 HOH HOH . F 5 HOH A 149 649 227 HOH HOH . F 5 HOH A 150 650 133 HOH HOH . F 5 HOH A 151 651 132 HOH HOH . F 5 HOH A 152 652 139 HOH HOH . F 5 HOH A 153 653 95 HOH HOH . F 5 HOH A 154 654 207 HOH HOH . F 5 HOH A 155 655 56 HOH HOH . F 5 HOH A 156 656 55 HOH HOH . F 5 HOH A 157 657 159 HOH HOH . F 5 HOH A 158 658 87 HOH HOH . F 5 HOH A 159 659 116 HOH HOH . F 5 HOH A 160 660 122 HOH HOH . F 5 HOH A 161 661 180 HOH HOH . F 5 HOH A 162 662 86 HOH HOH . F 5 HOH A 163 663 17 HOH HOH . F 5 HOH A 164 664 32 HOH HOH . F 5 HOH A 165 665 16 HOH HOH . F 5 HOH A 166 666 93 HOH HOH . F 5 HOH A 167 667 138 HOH HOH . F 5 HOH A 168 668 43 HOH HOH . F 5 HOH A 169 669 147 HOH HOH . F 5 HOH A 170 670 170 HOH HOH . F 5 HOH A 171 671 208 HOH HOH . F 5 HOH A 172 672 89 HOH HOH . F 5 HOH A 173 673 229 HOH HOH . F 5 HOH A 174 674 188 HOH HOH . F 5 HOH A 175 675 101 HOH HOH . F 5 HOH A 176 676 174 HOH HOH . F 5 HOH A 177 677 182 HOH HOH . F 5 HOH A 178 678 90 HOH HOH . F 5 HOH A 179 679 202 HOH HOH . F 5 HOH A 180 680 164 HOH HOH . F 5 HOH A 181 681 52 HOH HOH . F 5 HOH A 182 682 172 HOH HOH . F 5 HOH A 183 683 185 HOH HOH . F 5 HOH A 184 684 117 HOH HOH . F 5 HOH A 185 685 168 HOH HOH . F 5 HOH A 186 686 145 HOH HOH . F 5 HOH A 187 687 171 HOH HOH . F 5 HOH A 188 688 196 HOH HOH . F 5 HOH A 189 689 79 HOH HOH . F 5 HOH A 190 690 84 HOH HOH . F 5 HOH A 191 691 195 HOH HOH . F 5 HOH A 192 692 19 HOH HOH . F 5 HOH A 193 693 91 HOH HOH . F 5 HOH A 194 694 130 HOH HOH . F 5 HOH A 195 695 161 HOH HOH . F 5 HOH A 196 696 163 HOH HOH . F 5 HOH A 197 697 183 HOH HOH . F 5 HOH A 198 698 218 HOH HOH . F 5 HOH A 199 699 175 HOH HOH . F 5 HOH A 200 700 216 HOH HOH . F 5 HOH A 201 701 206 HOH HOH . F 5 HOH A 202 702 69 HOH HOH . F 5 HOH A 203 703 201 HOH HOH . F 5 HOH A 204 704 198 HOH HOH . F 5 HOH A 205 705 48 HOH HOH . F 5 HOH A 206 706 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AUW . . . D 3 -107.147 -176.484 308.862 1 23.52 ? C2 AUW 403 A 1 HETATM 2 C C1 AUW . . . D 3 -107.61 -176.7 307.441 1 25.04 ? C1 AUW 403 A 1 HETATM 3 CL CL1 AUW . . . D 3 -109.963 -178.329 310.067 1 29.25 ? CL1 AUW 403 A 1 HETATM 4 C C23 AUW . . . D 3 -110.457 -176.716 309.705 1 24.48 ? C23 AUW 403 A 1 HETATM 5 C C8 AUW . . . D 3 -109.486 -175.73 309.533 1 26.04 ? C8 AUW 403 A 1 HETATM 6 C C7 AUW . . . D 3 -108.04 -175.993 309.831 1 25.78 ? C7 AUW 403 A 1 HETATM 7 C C6 AUW . . . D 3 -107.599 -175.853 311.156 1 28.55 ? C6 AUW 403 A 1 HETATM 8 C C5 AUW . . . D 3 -106.298 -176.19 311.504 1 28.82 ? C5 AUW 403 A 1 HETATM 9 C C4 AUW . . . D 3 -105.425 -176.671 310.545 1 28.26 ? C4 AUW 403 A 1 HETATM 10 C C3 AUW . . . D 3 -105.847 -176.825 309.235 1 24.06 ? C3 AUW 403 A 1 HETATM 11 C C AUW . . . D 3 -107.421 -175.54 306.529 1 28.04 ? C AUW 403 A 1 HETATM 12 C C22 AUW . . . D 3 -111.804 -176.474 309.534 1 22.57 ? C22 AUW 403 A 1 HETATM 13 C C11 AUW . . . D 3 -112.247 -175.218 309.143 1 23.06 ? C11 AUW 403 A 1 HETATM 14 C C10 AUW . . . D 3 -111.302 -174.226 308.913 1 27.71 ? C10 AUW 403 A 1 HETATM 15 C C9 AUW . . . D 3 -109.956 -174.482 309.105 1 30.29 ? C9 AUW 403 A 1 HETATM 16 CL CL AUW . . . D 3 -108.839 -173.198 308.784 1 45.55 ? CL AUW 403 A 1 HETATM 17 C C12 AUW . . . D 3 -113.723 -174.935 308.992 1 24.1 ? C12 AUW 403 A 1 HETATM 18 N N AUW . . . D 3 -114.406 -175.832 308.047 1 22.72 ? N AUW 403 A 1 HETATM 19 C C13 AUW . . . D 3 -115.866 -175.639 308.049 1 23.4 ? C13 AUW 403 A 1 HETATM 20 C C14 AUW . . . D 3 -116.52 -176.706 307.197 1 25.93 ? C14 AUW 403 A 1 HETATM 21 C C15 AUW . . . D 3 -118.013 -176.708 307.254 1 27.04 ? C15 AUW 403 A 1 HETATM 22 N N2 AUW . . . D 3 -118.757 -175.733 307.746 1 31 ? N2 AUW 403 A 1 HETATM 23 C C21 AUW . . . D 3 -120.075 -176.111 307.473 1 34.72 ? C21 AUW 403 A 1 HETATM 24 C C16 AUW . . . D 3 -120.078 -177.341 306.819 1 33.82 ? C16 AUW 403 A 1 HETATM 25 N N1 AUW . . . D 3 -118.746 -177.7 306.698 1 26.34 ? N1 AUW 403 A 1 HETATM 26 C C20 AUW . . . D 3 -121.286 -175.477 307.76 1 39.13 ? C20 AUW 403 A 1 HETATM 27 C C19 AUW . . . D 3 -122.474 -176.095 307.382 1 41.41 ? C19 AUW 403 A 1 HETATM 28 C C18 AUW . . . D 3 -122.462 -177.33 306.721 1 41.17 ? C18 AUW 403 A 1 HETATM 29 C C17 AUW . . . D 3 -121.261 -177.969 306.434 1 38.24 ? C17 AUW 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #