data_6EI1 # _model_server_result.job_id 3YueCPxmvZCxxj7rgAkalA _model_server_result.datetime_utc '2024-11-19 13:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ei1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6EI1 # _exptl.entry_id 6EI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EI1 _cell.length_a 84.23 _cell.length_b 84.23 _cell.length_c 201.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 129 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id AYE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AYE _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.663 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EI1 _atom_sites.fract_transf_matrix[1][1] 0.011872 _atom_sites.fract_transf_matrix[1][2] 0.006854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AYE A 1 601 76 AYE AYE . D 4 GOL A 1 602 1 GOL GOL . E 5 MLI A 1 603 1 MLI MLI . F 6 HOH A 1 701 320 HOH HOH . F 6 HOH A 2 702 290 HOH HOH . F 6 HOH A 3 703 62 HOH HOH . F 6 HOH A 4 704 125 HOH HOH . F 6 HOH A 5 705 45 HOH HOH . F 6 HOH A 6 706 274 HOH HOH . F 6 HOH A 7 707 40 HOH HOH . F 6 HOH A 8 708 135 HOH HOH . F 6 HOH A 9 709 141 HOH HOH . F 6 HOH A 10 710 266 HOH HOH . F 6 HOH A 11 711 251 HOH HOH . F 6 HOH A 12 712 55 HOH HOH . F 6 HOH A 13 713 180 HOH HOH . F 6 HOH A 14 714 136 HOH HOH . F 6 HOH A 15 715 299 HOH HOH . F 6 HOH A 16 716 4 HOH HOH . F 6 HOH A 17 717 84 HOH HOH . F 6 HOH A 18 718 307 HOH HOH . F 6 HOH A 19 719 145 HOH HOH . F 6 HOH A 20 720 122 HOH HOH . F 6 HOH A 21 721 79 HOH HOH . F 6 HOH A 22 722 25 HOH HOH . F 6 HOH A 23 723 18 HOH HOH . F 6 HOH A 24 724 194 HOH HOH . F 6 HOH A 25 725 50 HOH HOH . F 6 HOH A 26 726 156 HOH HOH . F 6 HOH A 27 727 66 HOH HOH . F 6 HOH A 28 728 15 HOH HOH . F 6 HOH A 29 729 105 HOH HOH . F 6 HOH A 30 730 30 HOH HOH . F 6 HOH A 31 731 177 HOH HOH . F 6 HOH A 32 732 14 HOH HOH . F 6 HOH A 33 733 88 HOH HOH . F 6 HOH A 34 734 96 HOH HOH . F 6 HOH A 35 735 103 HOH HOH . F 6 HOH A 36 736 249 HOH HOH . F 6 HOH A 37 737 106 HOH HOH . F 6 HOH A 38 738 3 HOH HOH . F 6 HOH A 39 739 208 HOH HOH . F 6 HOH A 40 740 23 HOH HOH . F 6 HOH A 41 741 235 HOH HOH . F 6 HOH A 42 742 230 HOH HOH . F 6 HOH A 43 743 49 HOH HOH . F 6 HOH A 44 744 13 HOH HOH . F 6 HOH A 45 745 32 HOH HOH . F 6 HOH A 46 746 27 HOH HOH . F 6 HOH A 47 747 238 HOH HOH . F 6 HOH A 48 748 46 HOH HOH . F 6 HOH A 49 749 159 HOH HOH . F 6 HOH A 50 750 174 HOH HOH . F 6 HOH A 51 751 196 HOH HOH . F 6 HOH A 52 752 1 HOH HOH . F 6 HOH A 53 753 16 HOH HOH . F 6 HOH A 54 754 175 HOH HOH . F 6 HOH A 55 755 155 HOH HOH . F 6 HOH A 56 756 117 HOH HOH . F 6 HOH A 57 757 197 HOH HOH . F 6 HOH A 58 758 107 HOH HOH . F 6 HOH A 59 759 65 HOH HOH . F 6 HOH A 60 760 121 HOH HOH . F 6 HOH A 61 761 52 HOH HOH . F 6 HOH A 62 762 35 HOH HOH . F 6 HOH A 63 763 119 HOH HOH . F 6 HOH A 64 764 247 HOH HOH . F 6 HOH A 65 765 8 HOH HOH . F 6 HOH A 66 766 80 HOH HOH . F 6 HOH A 67 767 293 HOH HOH . F 6 HOH A 68 768 109 HOH HOH . F 6 HOH A 69 769 98 HOH HOH . F 6 HOH A 70 770 5 HOH HOH . F 6 HOH A 71 771 76 HOH HOH . F 6 HOH A 72 772 51 HOH HOH . F 6 HOH A 73 773 2 HOH HOH . F 6 HOH A 74 774 139 HOH HOH . F 6 HOH A 75 775 252 HOH HOH . F 6 HOH A 76 776 161 HOH HOH . F 6 HOH A 77 777 129 HOH HOH . F 6 HOH A 78 778 93 HOH HOH . F 6 HOH A 79 779 296 HOH HOH . F 6 HOH A 80 780 34 HOH HOH . F 6 HOH A 81 781 42 HOH HOH . F 6 HOH A 82 782 199 HOH HOH . F 6 HOH A 83 783 83 HOH HOH . F 6 HOH A 84 784 151 HOH HOH . F 6 HOH A 85 785 58 HOH HOH . F 6 HOH A 86 786 67 HOH HOH . F 6 HOH A 87 787 64 HOH HOH . F 6 HOH A 88 788 99 HOH HOH . F 6 HOH A 89 789 20 HOH HOH . F 6 HOH A 90 790 217 HOH HOH . F 6 HOH A 91 791 127 HOH HOH . F 6 HOH A 92 792 198 HOH HOH . F 6 HOH A 93 793 10 HOH HOH . F 6 HOH A 94 794 342 HOH HOH . F 6 HOH A 95 795 7 HOH HOH . F 6 HOH A 96 796 270 HOH HOH . F 6 HOH A 97 797 170 HOH HOH . F 6 HOH A 98 798 6 HOH HOH . F 6 HOH A 99 799 61 HOH HOH . F 6 HOH A 100 800 173 HOH HOH . F 6 HOH A 101 801 212 HOH HOH . F 6 HOH A 102 802 97 HOH HOH . F 6 HOH A 103 803 41 HOH HOH . F 6 HOH A 104 804 220 HOH HOH . F 6 HOH A 105 805 57 HOH HOH . F 6 HOH A 106 806 176 HOH HOH . F 6 HOH A 107 807 82 HOH HOH . F 6 HOH A 108 808 37 HOH HOH . F 6 HOH A 109 809 77 HOH HOH . F 6 HOH A 110 810 48 HOH HOH . F 6 HOH A 111 811 343 HOH HOH . F 6 HOH A 112 812 95 HOH HOH . F 6 HOH A 113 813 43 HOH HOH . F 6 HOH A 114 814 22 HOH HOH . F 6 HOH A 115 815 254 HOH HOH . F 6 HOH A 116 816 267 HOH HOH . F 6 HOH A 117 817 71 HOH HOH . F 6 HOH A 118 818 218 HOH HOH . F 6 HOH A 119 819 29 HOH HOH . F 6 HOH A 120 820 295 HOH HOH . F 6 HOH A 121 821 75 HOH HOH . F 6 HOH A 122 822 262 HOH HOH . F 6 HOH A 123 823 26 HOH HOH . F 6 HOH A 124 824 303 HOH HOH . F 6 HOH A 125 825 28 HOH HOH . F 6 HOH A 126 826 205 HOH HOH . F 6 HOH A 127 827 256 HOH HOH . F 6 HOH A 128 828 63 HOH HOH . F 6 HOH A 129 829 146 HOH HOH . F 6 HOH A 130 830 160 HOH HOH . F 6 HOH A 131 831 215 HOH HOH . F 6 HOH A 132 832 278 HOH HOH . F 6 HOH A 133 833 240 HOH HOH . F 6 HOH A 134 834 36 HOH HOH . F 6 HOH A 135 835 81 HOH HOH . F 6 HOH A 136 836 33 HOH HOH . F 6 HOH A 137 837 134 HOH HOH . F 6 HOH A 138 838 115 HOH HOH . F 6 HOH A 139 839 143 HOH HOH . F 6 HOH A 140 840 168 HOH HOH . F 6 HOH A 141 841 324 HOH HOH . F 6 HOH A 142 842 261 HOH HOH . F 6 HOH A 143 843 133 HOH HOH . F 6 HOH A 144 844 54 HOH HOH . F 6 HOH A 145 845 183 HOH HOH . F 6 HOH A 146 846 112 HOH HOH . F 6 HOH A 147 847 53 HOH HOH . F 6 HOH A 148 848 72 HOH HOH . F 6 HOH A 149 849 211 HOH HOH . F 6 HOH A 150 850 166 HOH HOH . F 6 HOH A 151 851 47 HOH HOH . F 6 HOH A 152 852 21 HOH HOH . F 6 HOH A 153 853 321 HOH HOH . F 6 HOH A 154 854 114 HOH HOH . F 6 HOH A 155 855 132 HOH HOH . F 6 HOH A 156 856 70 HOH HOH . F 6 HOH A 157 857 124 HOH HOH . F 6 HOH A 158 858 222 HOH HOH . F 6 HOH A 159 859 24 HOH HOH . F 6 HOH A 160 860 12 HOH HOH . F 6 HOH A 161 861 192 HOH HOH . F 6 HOH A 162 862 153 HOH HOH . F 6 HOH A 163 863 108 HOH HOH . F 6 HOH A 164 864 150 HOH HOH . F 6 HOH A 165 865 297 HOH HOH . F 6 HOH A 166 866 237 HOH HOH . F 6 HOH A 167 867 111 HOH HOH . F 6 HOH A 168 868 273 HOH HOH . F 6 HOH A 169 869 216 HOH HOH . F 6 HOH A 170 870 326 HOH HOH . F 6 HOH A 171 871 167 HOH HOH . F 6 HOH A 172 872 193 HOH HOH . F 6 HOH A 173 873 246 HOH HOH . F 6 HOH A 174 874 302 HOH HOH . F 6 HOH A 175 875 214 HOH HOH . F 6 HOH A 176 876 226 HOH HOH . F 6 HOH A 177 877 282 HOH HOH . F 6 HOH A 178 878 334 HOH HOH . F 6 HOH A 179 879 224 HOH HOH . F 6 HOH A 180 880 213 HOH HOH . F 6 HOH A 181 881 231 HOH HOH . F 6 HOH A 182 882 219 HOH HOH . F 6 HOH A 183 883 113 HOH HOH . F 6 HOH A 184 884 154 HOH HOH . F 6 HOH A 185 885 287 HOH HOH . F 6 HOH A 186 886 60 HOH HOH . F 6 HOH A 187 887 74 HOH HOH . F 6 HOH A 188 888 116 HOH HOH . F 6 HOH A 189 889 149 HOH HOH . F 6 HOH A 190 890 86 HOH HOH . F 6 HOH A 191 891 200 HOH HOH . F 6 HOH A 192 892 118 HOH HOH . F 6 HOH A 193 893 169 HOH HOH . F 6 HOH A 194 894 164 HOH HOH . F 6 HOH A 195 895 157 HOH HOH . F 6 HOH A 196 896 306 HOH HOH . F 6 HOH A 197 897 221 HOH HOH . F 6 HOH A 198 898 142 HOH HOH . F 6 HOH A 199 899 87 HOH HOH . F 6 HOH A 200 900 126 HOH HOH . F 6 HOH A 201 901 244 HOH HOH . F 6 HOH A 202 902 137 HOH HOH . F 6 HOH A 203 903 329 HOH HOH . F 6 HOH A 204 904 92 HOH HOH . F 6 HOH A 205 905 279 HOH HOH . F 6 HOH A 206 906 101 HOH HOH . F 6 HOH A 207 907 162 HOH HOH . F 6 HOH A 208 908 158 HOH HOH . F 6 HOH A 209 909 203 HOH HOH . F 6 HOH A 210 910 147 HOH HOH . F 6 HOH A 211 911 298 HOH HOH . F 6 HOH A 212 912 223 HOH HOH . F 6 HOH A 213 913 314 HOH HOH . F 6 HOH A 214 914 94 HOH HOH . F 6 HOH A 215 915 31 HOH HOH . F 6 HOH A 216 916 181 HOH HOH . F 6 HOH A 217 917 120 HOH HOH . F 6 HOH A 218 918 182 HOH HOH . F 6 HOH A 219 919 110 HOH HOH . F 6 HOH A 220 920 144 HOH HOH . F 6 HOH A 221 921 242 HOH HOH . F 6 HOH A 222 922 241 HOH HOH . F 6 HOH A 223 923 227 HOH HOH . F 6 HOH A 224 924 283 HOH HOH . F 6 HOH A 225 925 312 HOH HOH . F 6 HOH A 226 926 140 HOH HOH . F 6 HOH A 227 927 85 HOH HOH . F 6 HOH A 228 928 171 HOH HOH . G 6 HOH B 1 101 225 HOH HOH . G 6 HOH B 2 102 190 HOH HOH . G 6 HOH B 3 103 315 HOH HOH . G 6 HOH B 4 104 91 HOH HOH . G 6 HOH B 5 105 131 HOH HOH . G 6 HOH B 6 106 188 HOH HOH . G 6 HOH B 7 107 228 HOH HOH . G 6 HOH B 8 108 184 HOH HOH . G 6 HOH B 9 109 185 HOH HOH . G 6 HOH B 10 110 152 HOH HOH . G 6 HOH B 11 111 148 HOH HOH . G 6 HOH B 12 112 189 HOH HOH . G 6 HOH B 13 113 44 HOH HOH . G 6 HOH B 14 114 172 HOH HOH . G 6 HOH B 15 115 59 HOH HOH . G 6 HOH B 16 116 38 HOH HOH . G 6 HOH B 17 117 11 HOH HOH . G 6 HOH B 18 118 39 HOH HOH . G 6 HOH B 19 119 186 HOH HOH . G 6 HOH B 20 120 102 HOH HOH . G 6 HOH B 21 121 232 HOH HOH . G 6 HOH B 22 122 104 HOH HOH . G 6 HOH B 23 123 90 HOH HOH . G 6 HOH B 24 124 17 HOH HOH . G 6 HOH B 25 125 178 HOH HOH . G 6 HOH B 26 126 313 HOH HOH . G 6 HOH B 27 127 128 HOH HOH . G 6 HOH B 28 128 19 HOH HOH . G 6 HOH B 29 129 138 HOH HOH . G 6 HOH B 30 130 9 HOH HOH . G 6 HOH B 31 131 300 HOH HOH . G 6 HOH B 32 132 56 HOH HOH . G 6 HOH B 33 133 69 HOH HOH . G 6 HOH B 34 134 204 HOH HOH . G 6 HOH B 35 135 243 HOH HOH . G 6 HOH B 36 136 260 HOH HOH . G 6 HOH B 37 137 229 HOH HOH . G 6 HOH B 38 138 233 HOH HOH . G 6 HOH B 39 139 100 HOH HOH . G 6 HOH B 40 140 281 HOH HOH . G 6 HOH B 41 141 253 HOH HOH . G 6 HOH B 42 142 269 HOH HOH . G 6 HOH B 43 143 236 HOH HOH . G 6 HOH B 44 144 89 HOH HOH . G 6 HOH B 45 145 268 HOH HOH . G 6 HOH B 46 146 195 HOH HOH . G 6 HOH B 47 147 187 HOH HOH . G 6 HOH B 48 148 78 HOH HOH . G 6 HOH B 49 149 68 HOH HOH . G 6 HOH B 50 150 165 HOH HOH . G 6 HOH B 51 151 255 HOH HOH . G 6 HOH B 52 152 201 HOH HOH . G 6 HOH B 53 153 191 HOH HOH . G 6 HOH B 54 154 73 HOH HOH . G 6 HOH B 55 155 291 HOH HOH . G 6 HOH B 56 156 259 HOH HOH . G 6 HOH B 57 157 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 5 -18.543 -20.464 7.222 1 28.1 ? C1 MLI 603 A 1 HETATM 2 C C2 MLI . . . E 5 -17.139 -20.709 7.758 1 26.71 ? C2 MLI 603 A 1 HETATM 3 C C3 MLI . . . E 5 -18.941 -21.475 6.151 1 29.54 ? C3 MLI 603 A 1 HETATM 4 O O6 MLI . . . E 5 -16.154 -20.274 7.109 0.98 28.45 ? O6 MLI 603 A 1 HETATM 5 O O7 MLI . . . E 5 -16.975 -21.344 8.831 1 26.07 ? O7 MLI 603 A 1 HETATM 6 O O8 MLI . . . E 5 -20.024 -21.328 5.519 1 33.08 ? O8 MLI 603 A 1 HETATM 7 O O9 MLI . . . E 5 -18.19 -22.464 5.908 0.98 26.9 ? O9 MLI 603 A 1 HETATM 8 H H11 MLI . . . E 5 -18.583 -19.572 6.841 1 33.76 ? H11 MLI 603 A 1 HETATM 9 H H12 MLI . . . E 5 -19.174 -20.52 7.956 1 33.76 ? H12 MLI 603 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 9 #