data_6EID # _model_server_result.job_id BKMlhQzPLD5yUExNQOVziw _model_server_result.datetime_utc '2024-12-23 03:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1105}' # _entry.id 6EID # _exptl.entry_id 6EID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.95 _cell.angle_gamma 90 _cell.entry_id 6EID _cell.length_a 62.78 _cell.length_b 135.77 _cell.length_c 78.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EID _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,U 1 1,2 B,N,O,P,Q,R,S,T,V 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 54.739192 0 156.032955 3 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 50.718787 0 234.049432 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 36 A CYS 36 2_657 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 34 B CYS 34 1_555 B SG CYS 36 B CYS 36 2_658 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale1 A C SER 256 A SER 256 1_555 A N LYR 257 A LYR 257 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SER 256 A SER 256 1_555 A N LYR 257 A LYR 257 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LYR 257 A LYR 257 1_555 A N ASN 258 A ASN 258 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C LYR 257 A LYR 257 1_555 A N ASN 258 A ASN 258 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C SER 256 B SER 256 1_555 B N LYR 257 B LYR 257 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C SER 256 B SER 256 1_555 B N LYR 257 B LYR 257 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C LYR 257 B LYR 257 1_555 B N ASN 258 B ASN 258 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 B C LYR 257 B LYR 257 1_555 B N ASN 258 B ASN 258 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 344 n n C10 C9 OLC doub 345 n n C10 C11 OLC sing 346 n n C9 C8 OLC sing 347 n n C17 C16 OLC sing 348 z n C11 C12 OLC sing 349 n n C8 C7 OLC sing 350 n n C24 C22 OLC sing 351 n n C24 O25 OLC sing 352 n n C16 C15 OLC sing 353 n n C12 C13 OLC sing 354 n n C7 C6 OLC sing 355 n n C15 C14 OLC sing 356 n n C13 C14 OLC sing 357 n n C6 C5 OLC sing 358 n n C5 C4 OLC sing 359 n n C4 C3 OLC sing 360 n n C3 C2 OLC sing 361 n n C2 C1 OLC sing 362 n n C21 C22 OLC sing 363 n n C21 O20 OLC sing 364 n n C1 O19 OLC doub 365 n n C1 O20 OLC sing 366 n n C22 O23 OLC sing 367 n n C18 H18 OLC sing 368 n n C18 H18A OLC sing 369 n n C18 H18B OLC sing 370 n n C10 H10 OLC sing 371 n n C9 H9 OLC sing 372 n n C17 H17 OLC sing 373 n n C17 H17A OLC sing 374 n n C11 H11 OLC sing 375 n n C11 H11A OLC sing 376 n n C8 H8 OLC sing 377 n n C8 H8A OLC sing 378 n n C24 H24 OLC sing 379 n n C24 H24A OLC sing 380 n n C16 H16 OLC sing 381 n n C16 H16A OLC sing 382 n n C12 H12 OLC sing 383 n n C12 H12A OLC sing 384 n n C7 H7 OLC sing 385 n n C7 H7A OLC sing 386 n n C15 H15 OLC sing 387 n n C15 H15A OLC sing 388 n n C13 H13 OLC sing 389 n n C13 H13A OLC sing 390 n n C6 H6 OLC sing 391 n n C6 H6A OLC sing 392 n n C14 H14 OLC sing 393 n n C14 H14A OLC sing 394 n n C5 H5 OLC sing 395 n n C5 H5A OLC sing 396 n n C4 H4 OLC sing 397 n n C4 H4A OLC sing 398 n n C3 H3 OLC sing 399 n n C3 H3A OLC sing 400 n n C2 H2 OLC sing 401 n n C2 H2A OLC sing 402 n n C21 H21 OLC sing 403 n n C21 H21A OLC sing 404 n n C22 H22 OLC sing 405 n n O25 HO25 OLC sing 406 n n O23 HO23 OLC sing 407 n n # _atom_sites.entry_id 6EID _atom_sites.fract_transf_matrix[1][1] 0.015929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00082 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 1101 1101 OLC OLC . D 2 OLC A 1 1102 1102 OLC OLC . E 2 OLC A 1 1103 1104 OLC OLC . F 2 OLC A 1 1104 1103 OLC OLC . G 2 OLC A 1 1105 1105 OLC OLC . H 2 OLC A 1 1106 1106 OLC OLC . I 2 OLC A 1 1107 1107 OLC OLC . J 2 OLC A 1 1108 1108 OLC OLC . K 3 PO4 A 1 1109 1109 PO4 PO4 . L 3 PO4 A 1 1110 1110 PO4 PO4 . M 4 EDT A 1 1111 1111 EDT EDT . N 2 OLC B 1 1101 1101 OLC OLC . O 2 OLC B 1 1102 1102 OLC OLC . P 2 OLC B 1 1103 1103 OLC OLC . Q 2 OLC B 1 1104 1104 OLC OLC . R 2 OLC B 1 1105 1105 OLC OLC . S 3 PO4 B 1 1106 1109 PO4 PO4 . T 3 PO4 B 1 1107 1110 PO4 PO4 . U 5 HOH A 1 1201 1025 HOH HOH . U 5 HOH A 2 1202 1017 HOH HOH . U 5 HOH A 3 1203 1008 HOH HOH . U 5 HOH A 4 1204 1004 HOH HOH . U 5 HOH A 5 1205 1022 HOH HOH . U 5 HOH A 6 1206 1009 HOH HOH . U 5 HOH A 7 1207 1001 HOH HOH . U 5 HOH A 8 1208 1005 HOH HOH . U 5 HOH A 9 1209 1016 HOH HOH . U 5 HOH A 10 1210 1018 HOH HOH . U 5 HOH A 11 1211 1006 HOH HOH . U 5 HOH A 12 1212 1023 HOH HOH . U 5 HOH A 13 1213 1013 HOH HOH . U 5 HOH A 14 1214 1014 HOH HOH . U 5 HOH A 15 1215 1002 HOH HOH . U 5 HOH A 16 1216 1026 HOH HOH . U 5 HOH A 17 1217 1021 HOH HOH . U 5 HOH A 18 1218 1020 HOH HOH . U 5 HOH A 19 1219 1007 HOH HOH . U 5 HOH A 20 1220 1010 HOH HOH . U 5 HOH A 21 1221 1012 HOH HOH . U 5 HOH A 22 1222 1019 HOH HOH . U 5 HOH A 23 1223 1015 HOH HOH . U 5 HOH A 24 1224 1024 HOH HOH . U 5 HOH A 25 1225 1011 HOH HOH . U 5 HOH A 26 1226 1003 HOH HOH . V 5 HOH B 1 1201 1017 HOH HOH . V 5 HOH B 2 1202 1008 HOH HOH . V 5 HOH B 3 1203 1026 HOH HOH . V 5 HOH B 4 1204 1001 HOH HOH . V 5 HOH B 5 1205 1025 HOH HOH . V 5 HOH B 6 1206 1005 HOH HOH . V 5 HOH B 7 1207 1003 HOH HOH . V 5 HOH B 8 1208 1009 HOH HOH . V 5 HOH B 9 1209 1022 HOH HOH . V 5 HOH B 10 1210 1016 HOH HOH . V 5 HOH B 11 1211 1006 HOH HOH . V 5 HOH B 12 1212 1014 HOH HOH . V 5 HOH B 13 1213 1027 HOH HOH . V 5 HOH B 14 1214 1011 HOH HOH . V 5 HOH B 15 1215 1002 HOH HOH . V 5 HOH B 16 1216 1013 HOH HOH . V 5 HOH B 17 1217 1018 HOH HOH . V 5 HOH B 18 1218 1019 HOH HOH . V 5 HOH B 19 1219 1023 HOH HOH . V 5 HOH B 20 1220 1007 HOH HOH . V 5 HOH B 21 1221 1010 HOH HOH . V 5 HOH B 22 1222 1015 HOH HOH . V 5 HOH B 23 1223 1012 HOH HOH . V 5 HOH B 24 1224 1024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . R 2 5.531 -12.794 92.754 1 76.7 ? C18 OLC 1105 B 1 HETATM 2 C C10 OLC . . . R 2 8.731 -6.357 97.152 1 78.11 ? C10 OLC 1105 B 1 HETATM 3 C C9 OLC . . . R 2 9.391 -7.451 97.585 1 75.7 ? C9 OLC 1105 B 1 HETATM 4 C C17 OLC . . . R 2 5.632 -11.433 93.408 1 77.93 ? C17 OLC 1105 B 1 HETATM 5 C C11 OLC . . . R 2 7.519 -6.381 96.233 1 82.05 ? C11 OLC 1105 B 1 HETATM 6 C C8 OLC . . . R 2 9.042 -8.893 97.224 1 71.73 ? C8 OLC 1105 B 1 HETATM 7 C C16 OLC . . . R 2 6.152 -10.333 92.48 1 82.82 ? C16 OLC 1105 B 1 HETATM 8 C C12 OLC . . . R 2 7.901 -6.73 94.793 1 86.44 ? C12 OLC 1105 B 1 HETATM 9 C C7 OLC . . . R 2 9.428 -9.861 98.356 1 69.86 ? C7 OLC 1105 B 1 HETATM 10 C C15 OLC . . . R 2 5.748 -8.947 93.003 1 86.76 ? C15 OLC 1105 B 1 HETATM 11 C C13 OLC . . . R 2 6.721 -6.723 93.81 1 89.89 ? C13 OLC 1105 B 1 HETATM 12 C C6 OLC . . . R 2 9.181 -11.348 98.022 1 67.68 ? C6 OLC 1105 B 1 HETATM 13 C C14 OLC . . . R 2 6.785 -7.843 92.751 1 89.65 ? C14 OLC 1105 B 1 HETATM 14 C C5 OLC . . . R 2 9.258 -12.269 99.258 1 63.47 ? C5 OLC 1105 B 1 HETATM 15 C C4 OLC . . . R 2 9.746 -13.703 98.988 1 58.33 ? C4 OLC 1105 B 1 HETATM 16 C C3 OLC . . . R 2 8.61 -14.737 99.015 1 56.06 ? C3 OLC 1105 B 1 HETATM 17 C C2 OLC . . . R 2 9.064 -16.181 98.777 1 52.92 ? C2 OLC 1105 B 1 HETATM 18 C C1 OLC . . . R 2 8.09 -16.923 97.88 1 52.61 ? C1 OLC 1105 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #