data_6EIG # _model_server_result.job_id zzWYg0s5undIHknANXnFqQ _model_server_result.datetime_utc '2024-10-19 11:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 6EIG # _exptl.entry_id 6EIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.22 _cell.angle_gamma 90 _cell.entry_id 6EIG _cell.length_a 64.51 _cell.length_b 134.06 _cell.length_c 78.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,N 1 1,2 B,J,K,L,M,O 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -0.301302 0 78.469422 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 36 A CYS 36 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? disulf ? disulf2 B SG CYS 34 B CYS 34 1_555 B SG CYS 36 B CYS 36 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? covale ? covale1 A C SER 256 A SER 256 1_555 A N LYR 257 A LYR 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LYR 257 A LYR 257 1_555 A N ASN 258 A ASN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 E C9 OLC . A OLC 1103 1_555 H C12 LFA . A LFA 1106 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 E C7 OLC . A OLC 1103 1_555 H C11 LFA . A LFA 1106 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale5 E C5 OLC . A OLC 1103 1_555 H C8 LFA . A LFA 1106 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale6 B C SER 256 B SER 256 1_555 B N LYR 257 B LYR 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C LYR 257 B LYR 257 1_555 B N ASN 258 B ASN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 370 n n C10 C9 OLC doub 371 n n C10 C11 OLC sing 372 n n C9 C8 OLC sing 373 n n C17 C16 OLC sing 374 z n C11 C12 OLC sing 375 n n C8 C7 OLC sing 376 n n C24 C22 OLC sing 377 n n C24 O25 OLC sing 378 n n C16 C15 OLC sing 379 n n C12 C13 OLC sing 380 n n C7 C6 OLC sing 381 n n C15 C14 OLC sing 382 n n C13 C14 OLC sing 383 n n C6 C5 OLC sing 384 n n C5 C4 OLC sing 385 n n C4 C3 OLC sing 386 n n C3 C2 OLC sing 387 n n C2 C1 OLC sing 388 n n C21 C22 OLC sing 389 n n C21 O20 OLC sing 390 n n C1 O19 OLC doub 391 n n C1 O20 OLC sing 392 n n C22 O23 OLC sing 393 n n C18 H18 OLC sing 394 n n C18 H18A OLC sing 395 n n C18 H18B OLC sing 396 n n C10 H10 OLC sing 397 n n C9 H9 OLC sing 398 n n C17 H17 OLC sing 399 n n C17 H17A OLC sing 400 n n C11 H11 OLC sing 401 n n C11 H11A OLC sing 402 n n C8 H8 OLC sing 403 n n C8 H8A OLC sing 404 n n C24 H24 OLC sing 405 n n C24 H24A OLC sing 406 n n C16 H16 OLC sing 407 n n C16 H16A OLC sing 408 n n C12 H12 OLC sing 409 n n C12 H12A OLC sing 410 n n C7 H7 OLC sing 411 n n C7 H7A OLC sing 412 n n C15 H15 OLC sing 413 n n C15 H15A OLC sing 414 n n C13 H13 OLC sing 415 n n C13 H13A OLC sing 416 n n C6 H6 OLC sing 417 n n C6 H6A OLC sing 418 n n C14 H14 OLC sing 419 n n C14 H14A OLC sing 420 n n C5 H5 OLC sing 421 n n C5 H5A OLC sing 422 n n C4 H4 OLC sing 423 n n C4 H4A OLC sing 424 n n C3 H3 OLC sing 425 n n C3 H3A OLC sing 426 n n C2 H2 OLC sing 427 n n C2 H2A OLC sing 428 n n C21 H21 OLC sing 429 n n C21 H21A OLC sing 430 n n C22 H22 OLC sing 431 n n O25 HO25 OLC sing 432 n n O23 HO23 OLC sing 433 n n # _atom_sites.entry_id 6EIG _atom_sites.fract_transf_matrix[1][1] 0.015501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 1101 1101 OLC OLC . D 2 OLC A 1 1102 1102 OLC OLC . E 2 OLC A 1 1103 1103 OLC OLC . F 2 OLC A 1 1104 1105 OLC OLC . G 3 PO4 A 1 1105 1 PO4 PO4 . H 4 LFA A 1 1106 1 LFA LFA . I 4 LFA A 1 1107 2 LFA LFA . J 2 OLC B 1 1101 1101 OLC OLC . K 2 OLC B 1 1102 1102 OLC OLC . L 2 OLC B 1 1103 1103 OLC OLC . M 3 PO4 B 1 1104 2 PO4 PO4 . N 5 HOH A 1 1201 1009 HOH HOH . N 5 HOH A 2 1202 1008 HOH HOH . N 5 HOH A 3 1203 1016 HOH HOH . N 5 HOH A 4 1204 1019 HOH HOH . N 5 HOH A 5 1205 1007 HOH HOH . N 5 HOH A 6 1206 1002 HOH HOH . N 5 HOH A 7 1207 1026 HOH HOH . N 5 HOH A 8 1208 1023 HOH HOH . N 5 HOH A 9 1209 1006 HOH HOH . N 5 HOH A 10 1210 1022 HOH HOH . N 5 HOH A 11 1211 1014 HOH HOH . N 5 HOH A 12 1212 1010 HOH HOH . N 5 HOH A 13 1213 1020 HOH HOH . N 5 HOH A 14 1214 1003 HOH HOH . N 5 HOH A 15 1215 1001 HOH HOH . N 5 HOH A 16 1216 1004 HOH HOH . N 5 HOH A 17 1217 1005 HOH HOH . O 5 HOH B 1 1201 1009 HOH HOH . O 5 HOH B 2 1202 1031 HOH HOH . O 5 HOH B 3 1203 1007 HOH HOH . O 5 HOH B 4 1204 1008 HOH HOH . O 5 HOH B 5 1205 1016 HOH HOH . O 5 HOH B 6 1206 1014 HOH HOH . O 5 HOH B 7 1207 1022 HOH HOH . O 5 HOH B 8 1208 1006 HOH HOH . O 5 HOH B 9 1209 1002 HOH HOH . O 5 HOH B 10 1210 1030 HOH HOH . O 5 HOH B 11 1211 1010 HOH HOH . O 5 HOH B 12 1212 1024 HOH HOH . O 5 HOH B 13 1213 1003 HOH HOH . O 5 HOH B 14 1214 1025 HOH HOH . O 5 HOH B 15 1215 1005 HOH HOH . O 5 HOH B 16 1216 1027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . D 2 21.029 2.311 12.904 1 89.72 ? C10 OLC 1102 A 1 HETATM 2 C C9 OLC . . . D 2 21.265 3.037 11.815 1 91.35 ? C9 OLC 1102 A 1 HETATM 3 C C11 OLC . . . D 2 21.275 0.821 12.89 1 73.31 ? C11 OLC 1102 A 1 HETATM 4 C C8 OLC . . . D 2 21.017 4.527 11.831 1 80 ? C8 OLC 1102 A 1 HETATM 5 C C24 OLC . . . D 2 22.093 16.877 9.969 1 76.94 ? C24 OLC 1102 A 1 HETATM 6 C C7 OLC . . . D 2 22.343 5.273 11.733 1 76.67 ? C7 OLC 1102 A 1 HETATM 7 C C6 OLC . . . D 2 22.38 6.456 12.695 1 77.7 ? C6 OLC 1102 A 1 HETATM 8 C C5 OLC . . . D 2 21.387 7.535 12.278 1 79.14 ? C5 OLC 1102 A 1 HETATM 9 C C4 OLC . . . D 2 21.948 8.391 11.147 1 78.33 ? C4 OLC 1102 A 1 HETATM 10 C C3 OLC . . . D 2 21.436 9.824 11.237 1 71.82 ? C3 OLC 1102 A 1 HETATM 11 C C2 OLC . . . D 2 22.585 10.822 11.164 1 70.76 ? C2 OLC 1102 A 1 HETATM 12 C C21 OLC . . . D 2 22.786 14.531 10.458 1 83.53 ? C21 OLC 1102 A 1 HETATM 13 C C1 OLC . . . D 2 22.078 12.146 10.645 1 75.68 ? C1 OLC 1102 A 1 HETATM 14 C C22 OLC . . . D 2 22.013 15.738 10.979 1 79.96 ? C22 OLC 1102 A 1 HETATM 15 O O25 OLC . . . D 2 20.797 17.119 9.408 1 69.89 ? O25 OLC 1102 A 1 HETATM 16 O O23 OLC . . . D 2 20.641 15.384 11.197 1 80.9 ? O23 OLC 1102 A 1 HETATM 17 O O20 OLC . . . D 2 22.509 13.389 11.268 1 77.05 ? O20 OLC 1102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #