data_6EIP # _model_server_result.job_id b1DAzvnyU4h78H8mZPHwmA _model_server_result.datetime_utc '2025-01-06 11:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6EIP # _exptl.entry_id 6EIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.507 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[[(3~{R},7~{S})-2-cyclopentyl-9-methyl-8-oxidanylidene-2,9,12,14-tetrazatricyclo[8.4.0.0^{3,7}]tetradeca-1(14),10,12-trien-13-yl]amino]benzamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EIP _cell.length_a 87.95 _cell.length_b 88.37 _cell.length_c 229.23 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 198 A GLN 320 1_555 A N PTR 199 A PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PTR 199 A PTR 321 1_555 A N ILE 200 A ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C GLN 198 B GLN 320 1_555 B N PTR 199 B PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C PTR 199 B PTR 321 1_555 B N ILE 200 B ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLN 198 C GLN 320 1_555 C N PTR 199 C PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C C PTR 199 C PTR 321 1_555 C N ILE 200 C ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 D C GLN 198 D GLN 320 1_555 D N PTR 199 D PTR 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C PTR 199 D PTR 321 1_555 D N ILE 200 D ILE 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C23 H28 N6 O2' _chem_comp.formula_weight 420.507 _chem_comp.id B7B _chem_comp.mon_nstd_flag . _chem_comp.name 4-[[(3~{R},7~{S})-2-cyclopentyl-9-methyl-8-oxidanylidene-2,9,12,14-tetrazatricyclo[8.4.0.0^{3,7}]tetradeca-1(14),10,12-trien-13-yl]amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 B7B sing 70 n y N1 C2 B7B doub 71 n y NAS C2 B7B sing 72 n n NAS CAV B7B sing 73 n n C6 C5 B7B doub 74 n y C2 N3 B7B sing 75 n y CAE CAV B7B doub 76 n y CAE CAG B7B sing 77 n y CAV CAF B7B sing 78 n y CAF CAH B7B doub 79 n y CAG CAW B7B doub 80 n y N3 C4 B7B doub 81 n y C5 NBD B7B sing 82 n n C5 C4 B7B sing 83 n y CAA NBD B7B sing 84 n n NAB CAT B7B sing 85 n n CAH CAW B7B sing 86 n y NBD CAU B7B sing 87 n n CAW CAT B7B sing 88 n n C4 NBE B7B sing 89 n n CAU OAD B7B doub 90 n n CAU CBB B7B sing 91 n n CAT OAC B7B doub 92 n n CBB CBC B7B sing 93 n n CBB CAO B7B sing 94 n n NBE CBA B7B sing 95 n n NBE CBC B7B sing 96 n n CBA CAM B7B sing 97 n n CBA CAN B7B sing 98 n n CBC CAP B7B sing 99 n n CAO CAL B7B sing 100 n n CAM CAJ B7B sing 101 n n CAJ CAK B7B sing 102 n n CAN CAK B7B sing 103 n n CAP CAL B7B sing 104 n n C6 H1 B7B sing 105 n n CAM H2 B7B sing 106 n n CAM H3 B7B sing 107 n n CAJ H4 B7B sing 108 n n CAJ H5 B7B sing 109 n n CAK H6 B7B sing 110 n n CAK H7 B7B sing 111 n n CAN H8 B7B sing 112 n n CAN H9 B7B sing 113 n n CBA H10 B7B sing 114 n n CBC H11 B7B sing 115 n n CAP H12 B7B sing 116 n n CAP H13 B7B sing 117 n n CAL H14 B7B sing 118 n n CAL H15 B7B sing 119 n n CAO H16 B7B sing 120 n n CAO H17 B7B sing 121 n n CBB H18 B7B sing 122 n n CAA H19 B7B sing 123 n n CAA H20 B7B sing 124 n n CAA H21 B7B sing 125 n n NAS H22 B7B sing 126 n n CAE H23 B7B sing 127 n n CAG H24 B7B sing 128 n n NAB H25 B7B sing 129 n n NAB H26 B7B sing 130 n n CAH H27 B7B sing 131 n n CAF H28 B7B sing 132 n n # _atom_sites.entry_id 6EIP _atom_sites.fract_transf_matrix[1][1] 0.01137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B7B A 1 501 2 B7B DRG . F 2 B7B B 1 501 3 B7B DRG . G 2 B7B C 1 501 4 B7B DRG . H 2 B7B D 1 501 1 B7B DRG . I 3 HOH A 1 601 40 HOH HOH . I 3 HOH A 2 602 45 HOH HOH . I 3 HOH A 3 603 21 HOH HOH . I 3 HOH A 4 604 136 HOH HOH . I 3 HOH A 5 605 150 HOH HOH . I 3 HOH A 6 606 20 HOH HOH . I 3 HOH A 7 607 129 HOH HOH . I 3 HOH A 8 608 72 HOH HOH . I 3 HOH A 9 609 78 HOH HOH . I 3 HOH A 10 610 149 HOH HOH . I 3 HOH A 11 611 106 HOH HOH . I 3 HOH A 12 612 36 HOH HOH . I 3 HOH A 13 613 117 HOH HOH . I 3 HOH A 14 614 23 HOH HOH . I 3 HOH A 15 615 64 HOH HOH . I 3 HOH A 16 616 81 HOH HOH . I 3 HOH A 17 617 28 HOH HOH . I 3 HOH A 18 618 92 HOH HOH . I 3 HOH A 19 619 35 HOH HOH . I 3 HOH A 20 620 6 HOH HOH . I 3 HOH A 21 621 87 HOH HOH . I 3 HOH A 22 622 110 HOH HOH . I 3 HOH A 23 623 31 HOH HOH . I 3 HOH A 24 624 37 HOH HOH . I 3 HOH A 25 625 73 HOH HOH . I 3 HOH A 26 626 34 HOH HOH . I 3 HOH A 27 627 10 HOH HOH . I 3 HOH A 28 628 96 HOH HOH . I 3 HOH A 29 629 98 HOH HOH . I 3 HOH A 30 630 76 HOH HOH . I 3 HOH A 31 631 101 HOH HOH . I 3 HOH A 32 632 14 HOH HOH . I 3 HOH A 33 633 57 HOH HOH . I 3 HOH A 34 634 127 HOH HOH . I 3 HOH A 35 635 69 HOH HOH . I 3 HOH A 36 636 95 HOH HOH . I 3 HOH A 37 637 137 HOH HOH . I 3 HOH A 38 638 121 HOH HOH . I 3 HOH A 39 639 60 HOH HOH . I 3 HOH A 40 640 65 HOH HOH . I 3 HOH A 41 641 105 HOH HOH . I 3 HOH A 42 642 59 HOH HOH . I 3 HOH A 43 643 54 HOH HOH . I 3 HOH A 44 644 16 HOH HOH . I 3 HOH A 45 645 51 HOH HOH . I 3 HOH A 46 646 145 HOH HOH . J 3 HOH B 1 601 148 HOH HOH . J 3 HOH B 2 602 12 HOH HOH . J 3 HOH B 3 603 112 HOH HOH . J 3 HOH B 4 604 41 HOH HOH . J 3 HOH B 5 605 68 HOH HOH . J 3 HOH B 6 606 66 HOH HOH . J 3 HOH B 7 607 80 HOH HOH . J 3 HOH B 8 608 30 HOH HOH . J 3 HOH B 9 609 9 HOH HOH . J 3 HOH B 10 610 142 HOH HOH . J 3 HOH B 11 611 44 HOH HOH . J 3 HOH B 12 612 47 HOH HOH . J 3 HOH B 13 613 1 HOH HOH . J 3 HOH B 14 614 33 HOH HOH . J 3 HOH B 15 615 131 HOH HOH . J 3 HOH B 16 616 104 HOH HOH . J 3 HOH B 17 617 7 HOH HOH . J 3 HOH B 18 618 88 HOH HOH . J 3 HOH B 19 619 108 HOH HOH . J 3 HOH B 20 620 139 HOH HOH . J 3 HOH B 21 621 93 HOH HOH . J 3 HOH B 22 622 38 HOH HOH . J 3 HOH B 23 623 15 HOH HOH . J 3 HOH B 24 624 115 HOH HOH . J 3 HOH B 25 625 85 HOH HOH . J 3 HOH B 26 626 82 HOH HOH . J 3 HOH B 27 627 124 HOH HOH . J 3 HOH B 28 628 140 HOH HOH . J 3 HOH B 29 629 3 HOH HOH . J 3 HOH B 30 630 122 HOH HOH . J 3 HOH B 31 631 144 HOH HOH . J 3 HOH B 32 632 141 HOH HOH . K 3 HOH C 1 601 134 HOH HOH . K 3 HOH C 2 602 48 HOH HOH . K 3 HOH C 3 603 11 HOH HOH . K 3 HOH C 4 604 8 HOH HOH . K 3 HOH C 5 605 102 HOH HOH . K 3 HOH C 6 606 114 HOH HOH . K 3 HOH C 7 607 71 HOH HOH . K 3 HOH C 8 608 50 HOH HOH . K 3 HOH C 9 609 49 HOH HOH . K 3 HOH C 10 610 135 HOH HOH . K 3 HOH C 11 611 27 HOH HOH . K 3 HOH C 12 612 13 HOH HOH . K 3 HOH C 13 613 119 HOH HOH . K 3 HOH C 14 614 70 HOH HOH . K 3 HOH C 15 615 56 HOH HOH . K 3 HOH C 16 616 91 HOH HOH . K 3 HOH C 17 617 22 HOH HOH . K 3 HOH C 18 618 86 HOH HOH . K 3 HOH C 19 619 123 HOH HOH . K 3 HOH C 20 620 126 HOH HOH . K 3 HOH C 21 621 17 HOH HOH . K 3 HOH C 22 622 116 HOH HOH . L 3 HOH D 1 601 133 HOH HOH . L 3 HOH D 2 602 19 HOH HOH . L 3 HOH D 3 603 62 HOH HOH . L 3 HOH D 4 604 113 HOH HOH . L 3 HOH D 5 605 53 HOH HOH . L 3 HOH D 6 606 100 HOH HOH . L 3 HOH D 7 607 43 HOH HOH . L 3 HOH D 8 608 52 HOH HOH . L 3 HOH D 9 609 32 HOH HOH . L 3 HOH D 10 610 79 HOH HOH . L 3 HOH D 11 611 111 HOH HOH . L 3 HOH D 12 612 151 HOH HOH . L 3 HOH D 13 613 99 HOH HOH . L 3 HOH D 14 614 63 HOH HOH . L 3 HOH D 15 615 5 HOH HOH . L 3 HOH D 16 616 107 HOH HOH . L 3 HOH D 17 617 39 HOH HOH . L 3 HOH D 18 618 118 HOH HOH . L 3 HOH D 19 619 18 HOH HOH . L 3 HOH D 20 620 83 HOH HOH . L 3 HOH D 21 621 125 HOH HOH . L 3 HOH D 22 622 55 HOH HOH . L 3 HOH D 23 623 24 HOH HOH . L 3 HOH D 24 624 103 HOH HOH . L 3 HOH D 25 625 25 HOH HOH . L 3 HOH D 26 626 132 HOH HOH . L 3 HOH D 27 627 143 HOH HOH . L 3 HOH D 28 628 90 HOH HOH . L 3 HOH D 29 629 77 HOH HOH . L 3 HOH D 30 630 29 HOH HOH . L 3 HOH D 31 631 84 HOH HOH . L 3 HOH D 32 632 89 HOH HOH . L 3 HOH D 33 633 130 HOH HOH . L 3 HOH D 34 634 138 HOH HOH . L 3 HOH D 35 635 67 HOH HOH . L 3 HOH D 36 636 42 HOH HOH . L 3 HOH D 37 637 2 HOH HOH . L 3 HOH D 38 638 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B7B . . . E 2 -4.176 30.567 -9.897 1 57.92 ? C4 B7B 501 A 1 HETATM 2 C C5 B7B . . . E 2 -4.542 31.691 -9.14 1 58 ? C5 B7B 501 A 1 HETATM 3 C C6 B7B . . . E 2 -5.903 31.834 -8.809 1 56.62 ? C6 B7B 501 A 1 HETATM 4 N N1 B7B . . . E 2 -6.841 30.886 -9.236 1 55.17 ? N1 B7B 501 A 1 HETATM 5 N N3 B7B . . . E 2 -5.143 29.681 -10.267 1 55.72 ? N3 B7B 501 A 1 HETATM 6 C CAM B7B . . . E 2 -1.364 29.623 -12.327 1 60 ? CAM B7B 501 A 1 HETATM 7 C CAJ B7B . . . E 2 -1.688 28.939 -13.585 1 60.04 ? CAJ B7B 501 A 1 HETATM 8 C CAK B7B . . . E 2 -2.484 27.708 -13.136 1 60.02 ? CAK B7B 501 A 1 HETATM 9 C CAN B7B . . . E 2 -3.014 28.067 -11.75 1 59.62 ? CAN B7B 501 A 1 HETATM 10 C CBA B7B . . . E 2 -2.777 29.586 -11.69 1 59.75 ? CBA B7B 501 A 1 HETATM 11 N NBE B7B . . . E 2 -2.923 30.229 -10.311 1 59.13 ? NBE B7B 501 A 1 HETATM 12 C CBC B7B . . . E 2 -1.653 30.426 -9.505 1 60.01 ? CBC B7B 501 A 1 HETATM 13 C CAP B7B . . . E 2 -1.244 29.096 -8.836 1 60.46 ? CAP B7B 501 A 1 HETATM 14 C CAL B7B . . . E 2 -1.068 29.343 -7.353 1 60.29 ? CAL B7B 501 A 1 HETATM 15 C CAO B7B . . . E 2 -2.037 30.482 -7.19 1 60.28 ? CAO B7B 501 A 1 HETATM 16 C CBB B7B . . . E 2 -1.635 31.386 -8.293 1 60.66 ? CBB B7B 501 A 1 HETATM 17 C CAU B7B . . . E 2 -2.427 32.542 -8.332 1 60.84 ? CAU B7B 501 A 1 HETATM 18 O OAD B7B . . . E 2 -1.849 33.561 -7.945 1 61.89 ? OAD B7B 501 A 1 HETATM 19 N NBD B7B . . . E 2 -3.729 32.68 -8.682 1 59.33 ? NBD B7B 501 A 1 HETATM 20 C CAA B7B . . . E 2 -4.269 34.092 -8.646 1 59.51 ? CAA B7B 501 A 1 HETATM 21 C C2 B7B . . . E 2 -6.459 29.823 -9.961 1 54.56 ? C2 B7B 501 A 1 HETATM 22 N NAS B7B . . . E 2 -7.435 28.964 -10.328 1 52.99 ? NAS B7B 501 A 1 HETATM 23 C CAV B7B . . . E 2 -7.22 27.983 -11.22 1 52.21 ? CAV B7B 501 A 1 HETATM 24 C CAE B7B . . . E 2 -7.569 26.685 -10.86 1 52.16 ? CAE B7B 501 A 1 HETATM 25 C CAG B7B . . . E 2 -7.38 25.624 -11.743 1 51.84 ? CAG B7B 501 A 1 HETATM 26 C CAW B7B . . . E 2 -6.841 25.829 -13.015 1 51.82 ? CAW B7B 501 A 1 HETATM 27 C CAT B7B . . . E 2 -6.665 24.72 -13.86 1 51.48 ? CAT B7B 501 A 1 HETATM 28 O OAC B7B . . . E 2 -7.468 23.789 -13.853 1 52.2 ? OAC B7B 501 A 1 HETATM 29 N NAB B7B . . . E 2 -5.551 24.682 -14.598 1 51.36 ? NAB B7B 501 A 1 HETATM 30 C CAH B7B . . . E 2 -6.503 27.14 -13.385 1 51.99 ? CAH B7B 501 A 1 HETATM 31 C CAF B7B . . . E 2 -6.697 28.206 -12.498 1 52.08 ? CAF B7B 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #