data_6EJ1 # _model_server_result.job_id jKRs8P2-AEyajwZkfO1oog _model_server_result.datetime_utc '2024-11-05 15:37:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ej1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":808}' # _entry.id 6EJ1 # _exptl.entry_id 6EJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EJ1 _cell.length_a 143.21 _cell.length_b 143.21 _cell.length_c 153.82 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 413 A CYS 708 1_555 A SG CYS 430 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A OD1 ASN 67 A ASN 91 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 A O THR 121 A THR 416 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc3 A NE2 HIS 204 A HIS 499 1_555 D MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 A OE1 GLU 206 A GLU 501 1_555 D MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 A NE2 HIS 292 A HIS 587 1_555 D MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc6 A SG CYS 397 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 A SG CYS 400 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A SG CYS 420 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc9 A ND1 HIS 423 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc10 D MN MN . A MN 803 1_555 H N2 B7Q . A B7Q 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc11 D MN MN . A MN 803 1_555 K O HOH . A HOH 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc12 D MN MN . A MN 803 1_555 K O HOH . A HOH 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 6EJ1 _atom_sites.fract_transf_matrix[1][1] 0.006983 _atom_sites.fract_transf_matrix[1][2] 0.004031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 800 ZN ZN . C 3 MN A 1 802 801 MN MN . D 3 MN A 1 803 1 MN MN . E 4 DMS A 1 804 1 DMS DMS . F 4 DMS A 1 805 2 DMS DMS . G 4 DMS A 1 806 3 DMS DMS . H 5 B7Q A 1 807 1 B7Q 48 . I 6 EDO A 1 808 1 EDO EDO . J 6 EDO A 1 809 2 EDO EDO . K 7 HOH A 1 901 175 HOH HOH . K 7 HOH A 2 902 232 HOH HOH . K 7 HOH A 3 903 224 HOH HOH . K 7 HOH A 4 904 22 HOH HOH . K 7 HOH A 5 905 127 HOH HOH . K 7 HOH A 6 906 208 HOH HOH . K 7 HOH A 7 907 222 HOH HOH . K 7 HOH A 8 908 206 HOH HOH . K 7 HOH A 9 909 82 HOH HOH . K 7 HOH A 10 910 6 HOH HOH . K 7 HOH A 11 911 50 HOH HOH . K 7 HOH A 12 912 149 HOH HOH . K 7 HOH A 13 913 187 HOH HOH . K 7 HOH A 14 914 246 HOH HOH . K 7 HOH A 15 915 163 HOH HOH . K 7 HOH A 16 916 83 HOH HOH . K 7 HOH A 17 917 36 HOH HOH . K 7 HOH A 18 918 143 HOH HOH . K 7 HOH A 19 919 105 HOH HOH . K 7 HOH A 20 920 71 HOH HOH . K 7 HOH A 21 921 198 HOH HOH . K 7 HOH A 22 922 27 HOH HOH . K 7 HOH A 23 923 166 HOH HOH . K 7 HOH A 24 924 64 HOH HOH . K 7 HOH A 25 925 202 HOH HOH . K 7 HOH A 26 926 245 HOH HOH . K 7 HOH A 27 927 91 HOH HOH . K 7 HOH A 28 928 9 HOH HOH . K 7 HOH A 29 929 244 HOH HOH . K 7 HOH A 30 930 41 HOH HOH . K 7 HOH A 31 931 61 HOH HOH . K 7 HOH A 32 932 213 HOH HOH . K 7 HOH A 33 933 45 HOH HOH . K 7 HOH A 34 934 168 HOH HOH . K 7 HOH A 35 935 47 HOH HOH . K 7 HOH A 36 936 20 HOH HOH . K 7 HOH A 37 937 171 HOH HOH . K 7 HOH A 38 938 128 HOH HOH . K 7 HOH A 39 939 110 HOH HOH . K 7 HOH A 40 940 78 HOH HOH . K 7 HOH A 41 941 72 HOH HOH . K 7 HOH A 42 942 59 HOH HOH . K 7 HOH A 43 943 141 HOH HOH . K 7 HOH A 44 944 18 HOH HOH . K 7 HOH A 45 945 19 HOH HOH . K 7 HOH A 46 946 2 HOH HOH . K 7 HOH A 47 947 35 HOH HOH . K 7 HOH A 48 948 84 HOH HOH . K 7 HOH A 49 949 54 HOH HOH . K 7 HOH A 50 950 52 HOH HOH . K 7 HOH A 51 951 199 HOH HOH . K 7 HOH A 52 952 42 HOH HOH . K 7 HOH A 53 953 48 HOH HOH . K 7 HOH A 54 954 15 HOH HOH . K 7 HOH A 55 955 150 HOH HOH . K 7 HOH A 56 956 130 HOH HOH . K 7 HOH A 57 957 53 HOH HOH . K 7 HOH A 58 958 131 HOH HOH . K 7 HOH A 59 959 76 HOH HOH . K 7 HOH A 60 960 157 HOH HOH . K 7 HOH A 61 961 17 HOH HOH . K 7 HOH A 62 962 181 HOH HOH . K 7 HOH A 63 963 40 HOH HOH . K 7 HOH A 64 964 112 HOH HOH . K 7 HOH A 65 965 55 HOH HOH . K 7 HOH A 66 966 58 HOH HOH . K 7 HOH A 67 967 62 HOH HOH . K 7 HOH A 68 968 57 HOH HOH . K 7 HOH A 69 969 68 HOH HOH . K 7 HOH A 70 970 26 HOH HOH . K 7 HOH A 71 971 46 HOH HOH . K 7 HOH A 72 972 88 HOH HOH . K 7 HOH A 73 973 43 HOH HOH . K 7 HOH A 74 974 138 HOH HOH . K 7 HOH A 75 975 217 HOH HOH . K 7 HOH A 76 976 24 HOH HOH . K 7 HOH A 77 977 142 HOH HOH . K 7 HOH A 78 978 160 HOH HOH . K 7 HOH A 79 979 21 HOH HOH . K 7 HOH A 80 980 242 HOH HOH . K 7 HOH A 81 981 86 HOH HOH . K 7 HOH A 82 982 113 HOH HOH . K 7 HOH A 83 983 7 HOH HOH . K 7 HOH A 84 984 98 HOH HOH . K 7 HOH A 85 985 106 HOH HOH . K 7 HOH A 86 986 197 HOH HOH . K 7 HOH A 87 987 63 HOH HOH . K 7 HOH A 88 988 11 HOH HOH . K 7 HOH A 89 989 12 HOH HOH . K 7 HOH A 90 990 89 HOH HOH . K 7 HOH A 91 991 44 HOH HOH . K 7 HOH A 92 992 132 HOH HOH . K 7 HOH A 93 993 60 HOH HOH . K 7 HOH A 94 994 23 HOH HOH . K 7 HOH A 95 995 77 HOH HOH . K 7 HOH A 96 996 8 HOH HOH . K 7 HOH A 97 997 240 HOH HOH . K 7 HOH A 98 998 73 HOH HOH . K 7 HOH A 99 999 1 HOH HOH . K 7 HOH A 100 1000 31 HOH HOH . K 7 HOH A 101 1001 118 HOH HOH . K 7 HOH A 102 1002 119 HOH HOH . K 7 HOH A 103 1003 123 HOH HOH . K 7 HOH A 104 1004 97 HOH HOH . K 7 HOH A 105 1005 121 HOH HOH . K 7 HOH A 106 1006 172 HOH HOH . K 7 HOH A 107 1007 49 HOH HOH . K 7 HOH A 108 1008 100 HOH HOH . K 7 HOH A 109 1009 94 HOH HOH . K 7 HOH A 110 1010 96 HOH HOH . K 7 HOH A 111 1011 148 HOH HOH . K 7 HOH A 112 1012 104 HOH HOH . K 7 HOH A 113 1013 90 HOH HOH . K 7 HOH A 114 1014 136 HOH HOH . K 7 HOH A 115 1015 189 HOH HOH . K 7 HOH A 116 1016 137 HOH HOH . K 7 HOH A 117 1017 14 HOH HOH . K 7 HOH A 118 1018 28 HOH HOH . K 7 HOH A 119 1019 178 HOH HOH . K 7 HOH A 120 1020 117 HOH HOH . K 7 HOH A 121 1021 75 HOH HOH . K 7 HOH A 122 1022 239 HOH HOH . K 7 HOH A 123 1023 51 HOH HOH . K 7 HOH A 124 1024 139 HOH HOH . K 7 HOH A 125 1025 200 HOH HOH . K 7 HOH A 126 1026 180 HOH HOH . K 7 HOH A 127 1027 120 HOH HOH . K 7 HOH A 128 1028 170 HOH HOH . K 7 HOH A 129 1029 153 HOH HOH . K 7 HOH A 130 1030 162 HOH HOH . K 7 HOH A 131 1031 228 HOH HOH . K 7 HOH A 132 1032 238 HOH HOH . K 7 HOH A 133 1033 30 HOH HOH . K 7 HOH A 134 1034 122 HOH HOH . K 7 HOH A 135 1035 69 HOH HOH . K 7 HOH A 136 1036 211 HOH HOH . K 7 HOH A 137 1037 39 HOH HOH . K 7 HOH A 138 1038 34 HOH HOH . K 7 HOH A 139 1039 38 HOH HOH . K 7 HOH A 140 1040 182 HOH HOH . K 7 HOH A 141 1041 204 HOH HOH . K 7 HOH A 142 1042 108 HOH HOH . K 7 HOH A 143 1043 231 HOH HOH . K 7 HOH A 144 1044 81 HOH HOH . K 7 HOH A 145 1045 10 HOH HOH . K 7 HOH A 146 1046 56 HOH HOH . K 7 HOH A 147 1047 191 HOH HOH . K 7 HOH A 148 1048 92 HOH HOH . K 7 HOH A 149 1049 74 HOH HOH . K 7 HOH A 150 1050 155 HOH HOH . K 7 HOH A 151 1051 87 HOH HOH . K 7 HOH A 152 1052 226 HOH HOH . K 7 HOH A 153 1053 33 HOH HOH . K 7 HOH A 154 1054 145 HOH HOH . K 7 HOH A 155 1055 102 HOH HOH . K 7 HOH A 156 1056 169 HOH HOH . K 7 HOH A 157 1057 13 HOH HOH . K 7 HOH A 158 1058 152 HOH HOH . K 7 HOH A 159 1059 115 HOH HOH . K 7 HOH A 160 1060 85 HOH HOH . K 7 HOH A 161 1061 227 HOH HOH . K 7 HOH A 162 1062 67 HOH HOH . K 7 HOH A 163 1063 3 HOH HOH . K 7 HOH A 164 1064 66 HOH HOH . K 7 HOH A 165 1065 111 HOH HOH . K 7 HOH A 166 1066 135 HOH HOH . K 7 HOH A 167 1067 207 HOH HOH . K 7 HOH A 168 1068 79 HOH HOH . K 7 HOH A 169 1069 234 HOH HOH . K 7 HOH A 170 1070 125 HOH HOH . K 7 HOH A 171 1071 176 HOH HOH . K 7 HOH A 172 1072 4 HOH HOH . K 7 HOH A 173 1073 134 HOH HOH . K 7 HOH A 174 1074 177 HOH HOH . K 7 HOH A 175 1075 195 HOH HOH . K 7 HOH A 176 1076 116 HOH HOH . K 7 HOH A 177 1077 70 HOH HOH . K 7 HOH A 178 1078 124 HOH HOH . K 7 HOH A 179 1079 151 HOH HOH . K 7 HOH A 180 1080 65 HOH HOH . K 7 HOH A 181 1081 29 HOH HOH . K 7 HOH A 182 1082 32 HOH HOH . K 7 HOH A 183 1083 103 HOH HOH . K 7 HOH A 184 1084 95 HOH HOH . K 7 HOH A 185 1085 243 HOH HOH . K 7 HOH A 186 1086 216 HOH HOH . K 7 HOH A 187 1087 109 HOH HOH . K 7 HOH A 188 1088 223 HOH HOH . K 7 HOH A 189 1089 140 HOH HOH . K 7 HOH A 190 1090 37 HOH HOH . K 7 HOH A 191 1091 214 HOH HOH . K 7 HOH A 192 1092 5 HOH HOH . K 7 HOH A 193 1093 196 HOH HOH . K 7 HOH A 194 1094 133 HOH HOH . K 7 HOH A 195 1095 159 HOH HOH . K 7 HOH A 196 1096 212 HOH HOH . K 7 HOH A 197 1097 101 HOH HOH . K 7 HOH A 198 1098 99 HOH HOH . K 7 HOH A 199 1099 179 HOH HOH . K 7 HOH A 200 1100 107 HOH HOH . K 7 HOH A 201 1101 218 HOH HOH . K 7 HOH A 202 1102 229 HOH HOH . K 7 HOH A 203 1103 80 HOH HOH . K 7 HOH A 204 1104 183 HOH HOH . K 7 HOH A 205 1105 25 HOH HOH . K 7 HOH A 206 1106 192 HOH HOH . K 7 HOH A 207 1107 165 HOH HOH . K 7 HOH A 208 1108 194 HOH HOH . K 7 HOH A 209 1109 209 HOH HOH . K 7 HOH A 210 1110 174 HOH HOH . K 7 HOH A 211 1111 225 HOH HOH . K 7 HOH A 212 1112 156 HOH HOH . K 7 HOH A 213 1113 233 HOH HOH . K 7 HOH A 214 1114 114 HOH HOH . K 7 HOH A 215 1115 167 HOH HOH . K 7 HOH A 216 1116 193 HOH HOH . K 7 HOH A 217 1117 16 HOH HOH . K 7 HOH A 218 1118 236 HOH HOH . K 7 HOH A 219 1119 221 HOH HOH . K 7 HOH A 220 1120 146 HOH HOH . K 7 HOH A 221 1121 161 HOH HOH . K 7 HOH A 222 1122 129 HOH HOH . K 7 HOH A 223 1123 205 HOH HOH . K 7 HOH A 224 1124 241 HOH HOH . K 7 HOH A 225 1125 158 HOH HOH . K 7 HOH A 226 1126 203 HOH HOH . K 7 HOH A 227 1127 126 HOH HOH . K 7 HOH A 228 1128 190 HOH HOH . K 7 HOH A 229 1129 186 HOH HOH . K 7 HOH A 230 1130 147 HOH HOH . K 7 HOH A 231 1131 184 HOH HOH . K 7 HOH A 232 1132 164 HOH HOH . K 7 HOH A 233 1133 220 HOH HOH . K 7 HOH A 234 1134 188 HOH HOH . K 7 HOH A 235 1135 201 HOH HOH . K 7 HOH A 236 1136 144 HOH HOH . K 7 HOH A 237 1137 173 HOH HOH . K 7 HOH A 238 1138 219 HOH HOH . K 7 HOH A 239 1139 154 HOH HOH . K 7 HOH A 240 1140 235 HOH HOH . K 7 HOH A 241 1141 210 HOH HOH . K 7 HOH A 242 1142 93 HOH HOH . K 7 HOH A 243 1143 185 HOH HOH . K 7 HOH A 244 1144 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 87.027 61.537 8.459 1 67.45 ? C1 EDO 808 A 1 HETATM 2 O O1 EDO . . . I 6 86.344 62.724 8.024 1 73.38 ? O1 EDO 808 A 1 HETATM 3 C C2 EDO . . . I 6 88.107 61.121 7.47 1 55.34 ? C2 EDO 808 A 1 HETATM 4 O O2 EDO . . . I 6 88.829 60.011 7.997 1 58.91 ? O2 EDO 808 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #