data_6EJ3 # _model_server_result.job_id 7q6gmvm5xzKNraEcoKcmnw _model_server_result.datetime_utc '2024-12-03 14:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ej3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6EJ3 # _exptl.entry_id 6EJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.479 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "(1r,4r)-4-methoxy-6'-(5-methyl-3-pyridinyl)-3'H-dispiro[cyclohexane-1,2'-indene-1',4''-[1,3]oxazol]-2''-amine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EJ3 _cell.length_a 102.889 _cell.length_b 102.889 _cell.length_c 170.11 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 216 A CYS 155 1_555 A SG CYS 420 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 278 A CYS 217 1_555 A SG CYS 443 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? disulf ? disulf3 A SG CYS 330 A CYS 269 1_555 A SG CYS 380 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C23 H27 N3 O2' _chem_comp.formula_weight 377.479 _chem_comp.id B7T _chem_comp.mon_nstd_flag . _chem_comp.name "(1r,4r)-4-methoxy-6'-(5-methyl-3-pyridinyl)-3'H-dispiro[cyclohexane-1,2'-indene-1',4''-[1,3]oxazol]-2''-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C23 B7T sing 70 n n O28 C19 B7T sing 71 n n C14 C16 B7T sing 72 n n C14 C19 B7T sing 73 n n C16 C21 B7T sing 74 n n C19 C15 B7T sing 75 n n C13 C21 B7T sing 76 n n C13 C9 B7T sing 77 n n C15 C17 B7T sing 78 n n C21 C17 B7T sing 79 n n C21 C20 B7T sing 80 n n C9 C2 B7T doub 81 n y C9 C10 B7T sing 82 n y C18 C20 B7T sing 83 n n C18 O27 B7T sing 84 n n C2 C1 B7T sing 85 n y C20 C10 B7T sing 86 n n C20 N25 B7T sing 87 n n C10 C3 B7T doub 88 n y O27 C12 B7T sing 89 n n C1 C7 B7T doub 90 n y N25 C12 B7T doub 91 n n C12 N26 B7T sing 92 n n C3 C7 B7T sing 93 n y C7 C8 B7T sing 94 n n C5 C8 B7T doub 95 n y C5 N24 B7T sing 96 n y C8 C4 B7T sing 97 n y N24 C6 B7T doub 98 n y C4 C11 B7T doub 99 n y C6 C11 B7T sing 100 n y C11 C22 B7T sing 101 n n C1 H1 B7T sing 102 n n C2 H2 B7T sing 103 n n C3 H3 B7T sing 104 n n C13 H4 B7T sing 105 n n C13 H5 B7T sing 106 n n C14 H6 B7T sing 107 n n C14 H7 B7T sing 108 n n C15 H8 B7T sing 109 n n C15 H9 B7T sing 110 n n C16 H10 B7T sing 111 n n C16 H11 B7T sing 112 n n C19 H12 B7T sing 113 n n C22 H13 B7T sing 114 n n C22 H14 B7T sing 115 n n C22 H15 B7T sing 116 n n N26 H16 B7T sing 117 n n N26 H17 B7T sing 118 n n C4 H18 B7T sing 119 n n C5 H19 B7T sing 120 n n C6 H20 B7T sing 121 n n C17 H21 B7T sing 122 n n C17 H22 B7T sing 123 n n C18 H23 B7T sing 124 n n C18 H24 B7T sing 125 n n C23 H25 B7T sing 126 n n C23 H26 B7T sing 127 n n C23 H27 B7T sing 128 n n # _atom_sites.entry_id 6EJ3 _atom_sites.fract_transf_matrix[1][1] 0.009719 _atom_sites.fract_transf_matrix[1][2] 0.005611 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B7T A 1 501 1 B7T INH . C 3 HOH A 1 601 27 HOH HOH . C 3 HOH A 2 602 168 HOH HOH . C 3 HOH A 3 603 20 HOH HOH . C 3 HOH A 4 604 154 HOH HOH . C 3 HOH A 5 605 212 HOH HOH . C 3 HOH A 6 606 281 HOH HOH . C 3 HOH A 7 607 123 HOH HOH . C 3 HOH A 8 608 17 HOH HOH . C 3 HOH A 9 609 115 HOH HOH . C 3 HOH A 10 610 90 HOH HOH . C 3 HOH A 11 611 146 HOH HOH . C 3 HOH A 12 612 29 HOH HOH . C 3 HOH A 13 613 47 HOH HOH . C 3 HOH A 14 614 203 HOH HOH . C 3 HOH A 15 615 169 HOH HOH . C 3 HOH A 16 616 153 HOH HOH . C 3 HOH A 17 617 23 HOH HOH . C 3 HOH A 18 618 187 HOH HOH . C 3 HOH A 19 619 34 HOH HOH . C 3 HOH A 20 620 99 HOH HOH . C 3 HOH A 21 621 73 HOH HOH . C 3 HOH A 22 622 65 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 109 HOH HOH . C 3 HOH A 25 625 18 HOH HOH . C 3 HOH A 26 626 74 HOH HOH . C 3 HOH A 27 627 63 HOH HOH . C 3 HOH A 28 628 231 HOH HOH . C 3 HOH A 29 629 174 HOH HOH . C 3 HOH A 30 630 236 HOH HOH . C 3 HOH A 31 631 150 HOH HOH . C 3 HOH A 32 632 145 HOH HOH . C 3 HOH A 33 633 11 HOH HOH . C 3 HOH A 34 634 134 HOH HOH . C 3 HOH A 35 635 9 HOH HOH . C 3 HOH A 36 636 22 HOH HOH . C 3 HOH A 37 637 113 HOH HOH . C 3 HOH A 38 638 64 HOH HOH . C 3 HOH A 39 639 133 HOH HOH . C 3 HOH A 40 640 164 HOH HOH . C 3 HOH A 41 641 43 HOH HOH . C 3 HOH A 42 642 250 HOH HOH . C 3 HOH A 43 643 19 HOH HOH . C 3 HOH A 44 644 10 HOH HOH . C 3 HOH A 45 645 35 HOH HOH . C 3 HOH A 46 646 68 HOH HOH . C 3 HOH A 47 647 54 HOH HOH . C 3 HOH A 48 648 157 HOH HOH . C 3 HOH A 49 649 230 HOH HOH . C 3 HOH A 50 650 110 HOH HOH . C 3 HOH A 51 651 53 HOH HOH . C 3 HOH A 52 652 254 HOH HOH . C 3 HOH A 53 653 36 HOH HOH . C 3 HOH A 54 654 140 HOH HOH . C 3 HOH A 55 655 173 HOH HOH . C 3 HOH A 56 656 45 HOH HOH . C 3 HOH A 57 657 67 HOH HOH . C 3 HOH A 58 658 69 HOH HOH . C 3 HOH A 59 659 192 HOH HOH . C 3 HOH A 60 660 159 HOH HOH . C 3 HOH A 61 661 120 HOH HOH . C 3 HOH A 62 662 40 HOH HOH . C 3 HOH A 63 663 147 HOH HOH . C 3 HOH A 64 664 263 HOH HOH . C 3 HOH A 65 665 162 HOH HOH . C 3 HOH A 66 666 211 HOH HOH . C 3 HOH A 67 667 75 HOH HOH . C 3 HOH A 68 668 93 HOH HOH . C 3 HOH A 69 669 30 HOH HOH . C 3 HOH A 70 670 60 HOH HOH . C 3 HOH A 71 671 15 HOH HOH . C 3 HOH A 72 672 193 HOH HOH . C 3 HOH A 73 673 91 HOH HOH . C 3 HOH A 74 674 108 HOH HOH . C 3 HOH A 75 675 117 HOH HOH . C 3 HOH A 76 676 172 HOH HOH . C 3 HOH A 77 677 127 HOH HOH . C 3 HOH A 78 678 78 HOH HOH . C 3 HOH A 79 679 37 HOH HOH . C 3 HOH A 80 680 49 HOH HOH . C 3 HOH A 81 681 136 HOH HOH . C 3 HOH A 82 682 213 HOH HOH . C 3 HOH A 83 683 100 HOH HOH . C 3 HOH A 84 684 6 HOH HOH . C 3 HOH A 85 685 14 HOH HOH . C 3 HOH A 86 686 237 HOH HOH . C 3 HOH A 87 687 233 HOH HOH . C 3 HOH A 88 688 118 HOH HOH . C 3 HOH A 89 689 221 HOH HOH . C 3 HOH A 90 690 161 HOH HOH . C 3 HOH A 91 691 126 HOH HOH . C 3 HOH A 92 692 101 HOH HOH . C 3 HOH A 93 693 121 HOH HOH . C 3 HOH A 94 694 208 HOH HOH . C 3 HOH A 95 695 7 HOH HOH . C 3 HOH A 96 696 21 HOH HOH . C 3 HOH A 97 697 185 HOH HOH . C 3 HOH A 98 698 171 HOH HOH . C 3 HOH A 99 699 77 HOH HOH . C 3 HOH A 100 700 89 HOH HOH . C 3 HOH A 101 701 229 HOH HOH . C 3 HOH A 102 702 188 HOH HOH . C 3 HOH A 103 703 52 HOH HOH . C 3 HOH A 104 704 66 HOH HOH . C 3 HOH A 105 705 216 HOH HOH . C 3 HOH A 106 706 44 HOH HOH . C 3 HOH A 107 707 83 HOH HOH . C 3 HOH A 108 708 57 HOH HOH . C 3 HOH A 109 709 55 HOH HOH . C 3 HOH A 110 710 214 HOH HOH . C 3 HOH A 111 711 129 HOH HOH . C 3 HOH A 112 712 128 HOH HOH . C 3 HOH A 113 713 95 HOH HOH . C 3 HOH A 114 714 184 HOH HOH . C 3 HOH A 115 715 96 HOH HOH . C 3 HOH A 116 716 163 HOH HOH . C 3 HOH A 117 717 59 HOH HOH . C 3 HOH A 118 718 226 HOH HOH . C 3 HOH A 119 719 228 HOH HOH . C 3 HOH A 120 720 41 HOH HOH . C 3 HOH A 121 721 13 HOH HOH . C 3 HOH A 122 722 277 HOH HOH . C 3 HOH A 123 723 180 HOH HOH . C 3 HOH A 124 724 138 HOH HOH . C 3 HOH A 125 725 234 HOH HOH . C 3 HOH A 126 726 178 HOH HOH . C 3 HOH A 127 727 84 HOH HOH . C 3 HOH A 128 728 218 HOH HOH . C 3 HOH A 129 729 239 HOH HOH . C 3 HOH A 130 730 3 HOH HOH . C 3 HOH A 131 731 158 HOH HOH . C 3 HOH A 132 732 33 HOH HOH . C 3 HOH A 133 733 1 HOH HOH . C 3 HOH A 134 734 8 HOH HOH . C 3 HOH A 135 735 219 HOH HOH . C 3 HOH A 136 736 4 HOH HOH . C 3 HOH A 137 737 72 HOH HOH . C 3 HOH A 138 738 189 HOH HOH . C 3 HOH A 139 739 201 HOH HOH . C 3 HOH A 140 740 105 HOH HOH . C 3 HOH A 141 741 155 HOH HOH . C 3 HOH A 142 742 197 HOH HOH . C 3 HOH A 143 743 51 HOH HOH . C 3 HOH A 144 744 32 HOH HOH . C 3 HOH A 145 745 244 HOH HOH . C 3 HOH A 146 746 149 HOH HOH . C 3 HOH A 147 747 210 HOH HOH . C 3 HOH A 148 748 176 HOH HOH . C 3 HOH A 149 749 71 HOH HOH . C 3 HOH A 150 750 42 HOH HOH . C 3 HOH A 151 751 175 HOH HOH . C 3 HOH A 152 752 245 HOH HOH . C 3 HOH A 153 753 242 HOH HOH . C 3 HOH A 154 754 235 HOH HOH . C 3 HOH A 155 755 50 HOH HOH . C 3 HOH A 156 756 217 HOH HOH . C 3 HOH A 157 757 111 HOH HOH . C 3 HOH A 158 758 82 HOH HOH . C 3 HOH A 159 759 179 HOH HOH . C 3 HOH A 160 760 56 HOH HOH . C 3 HOH A 161 761 116 HOH HOH . C 3 HOH A 162 762 62 HOH HOH . C 3 HOH A 163 763 253 HOH HOH . C 3 HOH A 164 764 25 HOH HOH . C 3 HOH A 165 765 206 HOH HOH . C 3 HOH A 166 766 194 HOH HOH . C 3 HOH A 167 767 196 HOH HOH . C 3 HOH A 168 768 46 HOH HOH . C 3 HOH A 169 769 215 HOH HOH . C 3 HOH A 170 770 70 HOH HOH . C 3 HOH A 171 771 61 HOH HOH . C 3 HOH A 172 772 2 HOH HOH . C 3 HOH A 173 773 86 HOH HOH . C 3 HOH A 174 774 284 HOH HOH . C 3 HOH A 175 775 283 HOH HOH . C 3 HOH A 176 776 87 HOH HOH . C 3 HOH A 177 777 106 HOH HOH . C 3 HOH A 178 778 31 HOH HOH . C 3 HOH A 179 779 26 HOH HOH . C 3 HOH A 180 780 97 HOH HOH . C 3 HOH A 181 781 282 HOH HOH . C 3 HOH A 182 782 269 HOH HOH . C 3 HOH A 183 783 125 HOH HOH . C 3 HOH A 184 784 114 HOH HOH . C 3 HOH A 185 785 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B7T . . . B 2 -21.725 -39.4 -8.257 1 45.48 ? C1 B7T 501 A 1 HETATM 2 C C2 B7T . . . B 2 -21.171 -38.688 -9.304 1 44.63 ? C2 B7T 501 A 1 HETATM 3 C C3 B7T . . . B 2 -19.573 -40.113 -7.539 1 41.11 ? C3 B7T 501 A 1 HETATM 4 C C7 B7T . . . B 2 -20.945 -40.118 -7.361 1 44.94 ? C7 B7T 501 A 1 HETATM 5 C C8 B7T . . . B 2 -21.531 -40.923 -6.304 1 48.86 ? C8 B7T 501 A 1 HETATM 6 C C9 B7T . . . B 2 -19.804 -38.709 -9.465 1 41.58 ? C9 B7T 501 A 1 HETATM 7 C C10 B7T . . . B 2 -19.016 -39.411 -8.594 1 44.12 ? C10 B7T 501 A 1 HETATM 8 C C11 B7T . . . B 2 -21.416 -42.016 -4.168 1 49.72 ? C11 B7T 501 A 1 HETATM 9 C C12 B7T . . . B 2 -16.028 -40.075 -7.556 1 49.9 ? C12 B7T 501 A 1 HETATM 10 C C13 B7T . . . B 2 -19.005 -38.034 -10.517 1 38.72 ? C13 B7T 501 A 1 HETATM 11 C C14 B7T . . . B 2 -16.222 -37.015 -11.926 1 37.76 ? C14 B7T 501 A 1 HETATM 12 C C15 B7T . . . B 2 -17.069 -35.552 -10.041 1 39.35 ? C15 B7T 501 A 1 HETATM 13 C C16 B7T . . . B 2 -16.538 -38.263 -11.095 1 39.85 ? C16 B7T 501 A 1 HETATM 14 C C19 B7T . . . B 2 -15.965 -35.772 -11.071 1 40.58 ? C19 B7T 501 A 1 HETATM 15 C C20 B7T . . . B 2 -17.565 -39.288 -8.951 1 46.49 ? C20 B7T 501 A 1 HETATM 16 C C21 B7T . . . B 2 -17.57 -38.1 -9.956 1 42.59 ? C21 B7T 501 A 1 HETATM 17 C C22 B7T . . . B 2 -20.732 -42.277 -2.874 1 45.68 ? C22 B7T 501 A 1 HETATM 18 N N25 B7T . . . B 2 -16.745 -39.02 -7.767 1 49.66 ? N25 B7T 501 A 1 HETATM 19 N N26 B7T . . . B 2 -15.119 -40.257 -6.531 1 48.7 ? N26 B7T 501 A 1 HETATM 20 O O28 B7T . . . B 2 -15.983 -34.655 -11.952 1 44.8 ? O28 B7T 501 A 1 HETATM 21 C C4 B7T . . . B 2 -20.897 -41.13 -5.091 1 49.74 ? C4 B7T 501 A 1 HETATM 22 C C5 B7T . . . B 2 -22.706 -41.628 -6.5 1 52.16 ? C5 B7T 501 A 1 HETATM 23 C C6 B7T . . . B 2 -22.605 -42.645 -4.471 1 50.99 ? C6 B7T 501 A 1 HETATM 24 C C17 B7T . . . B 2 -17.284 -36.794 -9.185 1 40.57 ? C17 B7T 501 A 1 HETATM 25 C C18 B7T . . . B 2 -17.053 -40.642 -9.457 1 46.65 ? C18 B7T 501 A 1 HETATM 26 C C23 B7T . . . B 2 -14.901 -33.763 -11.711 1 44.42 ? C23 B7T 501 A 1 HETATM 27 N N24 B7T . . . B 2 -23.275 -42.459 -5.614 1 51.95 ? N24 B7T 501 A 1 HETATM 28 O O27 B7T . . . B 2 -16.173 -41.116 -8.431 1 48.05 ? O27 B7T 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #