data_6EJE # _model_server_result.job_id CiykAzCs6miJmkpCPURtRQ _model_server_result.datetime_utc '2025-07-05 15:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 6EJE # _exptl.entry_id 6EJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6EJE _cell.length_a 67.28 _cell.length_b 86.72 _cell.length_c 153.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 257 1_555 A SG CYS 77 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 93 A CYS 301 1_555 A SG CYS 334 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 353 A CYS 561 1_555 A SG CYS 366 A CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 355 A CYS 563 1_555 A SG CYS 364 A CYS 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 467 A CYS 675 1_555 A SG CYS 719 A CYS 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 A SG CYS 712 A CYS 920 1_555 A SG CYS 725 A CYS 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O SER 167 A SER 375 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A O TYR 170 A TYR 378 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A O VAL 173 A VAL 381 1_555 D NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc4 D NA NA . A NA 1002 1_555 E O HOH . A HOH 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 D NA NA . A NA 1002 1_555 E O HOH . A HOH 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EJE _atom_sites.fract_transf_matrix[1][1] 0.014863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1001 1 PO4 PO4 . D 4 NA A 1 1002 1 NA NA . E 5 HOH A 1 1101 111 HOH HOH . E 5 HOH A 2 1102 24 HOH HOH . E 5 HOH A 3 1103 127 HOH HOH . E 5 HOH A 4 1104 122 HOH HOH . E 5 HOH A 5 1105 15 HOH HOH . E 5 HOH A 6 1106 126 HOH HOH . E 5 HOH A 7 1107 80 HOH HOH . E 5 HOH A 8 1108 14 HOH HOH . E 5 HOH A 9 1109 78 HOH HOH . E 5 HOH A 10 1110 74 HOH HOH . E 5 HOH A 11 1111 4 HOH HOH . E 5 HOH A 12 1112 121 HOH HOH . E 5 HOH A 13 1113 118 HOH HOH . E 5 HOH A 14 1114 112 HOH HOH . E 5 HOH A 15 1115 123 HOH HOH . E 5 HOH A 16 1116 27 HOH HOH . E 5 HOH A 17 1117 103 HOH HOH . E 5 HOH A 18 1118 113 HOH HOH . E 5 HOH A 19 1119 82 HOH HOH . E 5 HOH A 20 1120 28 HOH HOH . E 5 HOH A 21 1121 39 HOH HOH . E 5 HOH A 22 1122 104 HOH HOH . E 5 HOH A 23 1123 57 HOH HOH . E 5 HOH A 24 1124 38 HOH HOH . E 5 HOH A 25 1125 65 HOH HOH . E 5 HOH A 26 1126 110 HOH HOH . E 5 HOH A 27 1127 53 HOH HOH . E 5 HOH A 28 1128 94 HOH HOH . E 5 HOH A 29 1129 79 HOH HOH . E 5 HOH A 30 1130 89 HOH HOH . E 5 HOH A 31 1131 131 HOH HOH . E 5 HOH A 32 1132 46 HOH HOH . E 5 HOH A 33 1133 8 HOH HOH . E 5 HOH A 34 1134 5 HOH HOH . E 5 HOH A 35 1135 55 HOH HOH . E 5 HOH A 36 1136 97 HOH HOH . E 5 HOH A 37 1137 116 HOH HOH . E 5 HOH A 38 1138 63 HOH HOH . E 5 HOH A 39 1139 102 HOH HOH . E 5 HOH A 40 1140 10 HOH HOH . E 5 HOH A 41 1141 37 HOH HOH . E 5 HOH A 42 1142 71 HOH HOH . E 5 HOH A 43 1143 81 HOH HOH . E 5 HOH A 44 1144 60 HOH HOH . E 5 HOH A 45 1145 3 HOH HOH . E 5 HOH A 46 1146 31 HOH HOH . E 5 HOH A 47 1147 56 HOH HOH . E 5 HOH A 48 1148 40 HOH HOH . E 5 HOH A 49 1149 35 HOH HOH . E 5 HOH A 50 1150 9 HOH HOH . E 5 HOH A 51 1151 20 HOH HOH . E 5 HOH A 52 1152 107 HOH HOH . E 5 HOH A 53 1153 91 HOH HOH . E 5 HOH A 54 1154 36 HOH HOH . E 5 HOH A 55 1155 7 HOH HOH . E 5 HOH A 56 1156 13 HOH HOH . E 5 HOH A 57 1157 12 HOH HOH . E 5 HOH A 58 1158 47 HOH HOH . E 5 HOH A 59 1159 32 HOH HOH . E 5 HOH A 60 1160 85 HOH HOH . E 5 HOH A 61 1161 52 HOH HOH . E 5 HOH A 62 1162 72 HOH HOH . E 5 HOH A 63 1163 115 HOH HOH . E 5 HOH A 64 1164 2 HOH HOH . E 5 HOH A 65 1165 26 HOH HOH . E 5 HOH A 66 1166 69 HOH HOH . E 5 HOH A 67 1167 64 HOH HOH . E 5 HOH A 68 1168 50 HOH HOH . E 5 HOH A 69 1169 41 HOH HOH . E 5 HOH A 70 1170 23 HOH HOH . E 5 HOH A 71 1171 75 HOH HOH . E 5 HOH A 72 1172 51 HOH HOH . E 5 HOH A 73 1173 34 HOH HOH . E 5 HOH A 74 1174 30 HOH HOH . E 5 HOH A 75 1175 45 HOH HOH . E 5 HOH A 76 1176 58 HOH HOH . E 5 HOH A 77 1177 54 HOH HOH . E 5 HOH A 78 1178 25 HOH HOH . E 5 HOH A 79 1179 16 HOH HOH . E 5 HOH A 80 1180 130 HOH HOH . E 5 HOH A 81 1181 100 HOH HOH . E 5 HOH A 82 1182 62 HOH HOH . E 5 HOH A 83 1183 1 HOH HOH . E 5 HOH A 84 1184 61 HOH HOH . E 5 HOH A 85 1185 48 HOH HOH . E 5 HOH A 86 1186 19 HOH HOH . E 5 HOH A 87 1187 44 HOH HOH . E 5 HOH A 88 1188 22 HOH HOH . E 5 HOH A 89 1189 49 HOH HOH . E 5 HOH A 90 1190 84 HOH HOH . E 5 HOH A 91 1191 105 HOH HOH . E 5 HOH A 92 1192 73 HOH HOH . E 5 HOH A 93 1193 59 HOH HOH . E 5 HOH A 94 1194 119 HOH HOH . E 5 HOH A 95 1195 86 HOH HOH . E 5 HOH A 96 1196 77 HOH HOH . E 5 HOH A 97 1197 133 HOH HOH . E 5 HOH A 98 1198 129 HOH HOH . E 5 HOH A 99 1199 132 HOH HOH . E 5 HOH A 100 1200 106 HOH HOH . E 5 HOH A 101 1201 11 HOH HOH . E 5 HOH A 102 1202 125 HOH HOH . E 5 HOH A 103 1203 66 HOH HOH . E 5 HOH A 104 1204 76 HOH HOH . E 5 HOH A 105 1205 114 HOH HOH . E 5 HOH A 106 1206 109 HOH HOH . E 5 HOH A 107 1207 43 HOH HOH . E 5 HOH A 108 1208 124 HOH HOH . E 5 HOH A 109 1209 68 HOH HOH . E 5 HOH A 110 1210 93 HOH HOH . F 5 HOH B 1 301 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.99 _atom_site.Cartn_y 31.396 _atom_site.Cartn_z 38.769 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 454 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #