data_6EJI # _model_server_result.job_id 2c2Ehf3Imbv-CX92RRBYsA _model_server_result.datetime_utc '2024-11-05 03:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6eji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":405}' # _entry.id 6EJI # _exptl.entry_id 6EJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.13 _cell.angle_gamma 90 _cell.entry_id 6EJI _cell.length_a 61.62 _cell.length_b 127.03 _cell.length_c 71.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N MSE 2 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 A C MSE 2 A MSE 2 1_555 A N MSE 3 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 A C MSE 3 A MSE 3 1_555 A N LYS 4 A LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C VAL 199 A VAL 199 1_555 A N MSE 200 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 200 A MSE 200 1_555 A N PHE 201 A PHE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 B C MSE 1 B MSE 1 1_555 B N MSE 2 B MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale7 B C MSE 2 B MSE 2 1_555 B N MSE 3 B MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 3 B MSE 3 1_555 B N LYS 4 B LYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C VAL 199 B VAL 199 1_555 B N MSE 200 B MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale10 B C MSE 200 B MSE 200 1_555 B N PHE 201 B PHE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? metalc ? metalc1 C O1A UD2 . A UD2 401 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc2 C O2A UD2 . A UD2 401 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 C O2B UD2 . A UD2 401 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 D K K . A K 402 1_555 P O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.441 ? metalc ? metalc5 F NA NA . A NA 404 1_555 P O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc6 G NA NA . A NA 405 1_555 P O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc7 J O1A UD2 . B UD2 401 1_555 N NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc8 J O3A UD2 . B UD2 401 1_555 N NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 J O1B UD2 . B UD2 401 1_555 M NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EJI _atom_sites.fract_transf_matrix[1][1] 0.016228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UD2 A 1 401 1 UD2 UG . D 3 K A 1 402 2 K K . E 4 GOL A 1 403 10 GOL GOL . F 5 NA A 1 404 3 NA NA . G 5 NA A 1 405 4 NA NA . H 6 CL A 1 406 1 CL CL . I 6 CL A 1 407 3 CL CL . J 2 UD2 B 1 401 2 UD2 UG . K 3 K B 1 402 1 K K . L 4 GOL B 1 403 8 GOL GOL . M 5 NA B 1 404 1 NA NA . N 5 NA B 1 405 2 NA NA . O 6 CL B 1 406 2 CL CL . P 7 HOH A 1 501 229 HOH HOH . P 7 HOH A 2 502 18 HOH HOH . P 7 HOH A 3 503 101 HOH HOH . P 7 HOH A 4 504 70 HOH HOH . P 7 HOH A 5 505 115 HOH HOH . P 7 HOH A 6 506 78 HOH HOH . P 7 HOH A 7 507 21 HOH HOH . P 7 HOH A 8 508 150 HOH HOH . P 7 HOH A 9 509 60 HOH HOH . P 7 HOH A 10 510 84 HOH HOH . P 7 HOH A 11 511 130 HOH HOH . P 7 HOH A 12 512 154 HOH HOH . P 7 HOH A 13 513 225 HOH HOH . P 7 HOH A 14 514 32 HOH HOH . P 7 HOH A 15 515 231 HOH HOH . P 7 HOH A 16 516 105 HOH HOH . P 7 HOH A 17 517 85 HOH HOH . P 7 HOH A 18 518 80 HOH HOH . P 7 HOH A 19 519 22 HOH HOH . P 7 HOH A 20 520 52 HOH HOH . P 7 HOH A 21 521 187 HOH HOH . P 7 HOH A 22 522 43 HOH HOH . P 7 HOH A 23 523 6 HOH HOH . P 7 HOH A 24 524 57 HOH HOH . P 7 HOH A 25 525 66 HOH HOH . P 7 HOH A 26 526 134 HOH HOH . P 7 HOH A 27 527 10 HOH HOH . P 7 HOH A 28 528 46 HOH HOH . P 7 HOH A 29 529 62 HOH HOH . P 7 HOH A 30 530 123 HOH HOH . P 7 HOH A 31 531 109 HOH HOH . P 7 HOH A 32 532 65 HOH HOH . P 7 HOH A 33 533 223 HOH HOH . P 7 HOH A 34 534 45 HOH HOH . P 7 HOH A 35 535 15 HOH HOH . P 7 HOH A 36 536 162 HOH HOH . P 7 HOH A 37 537 118 HOH HOH . P 7 HOH A 38 538 135 HOH HOH . P 7 HOH A 39 539 27 HOH HOH . P 7 HOH A 40 540 11 HOH HOH . P 7 HOH A 41 541 88 HOH HOH . P 7 HOH A 42 542 175 HOH HOH . P 7 HOH A 43 543 93 HOH HOH . P 7 HOH A 44 544 90 HOH HOH . P 7 HOH A 45 545 170 HOH HOH . P 7 HOH A 46 546 171 HOH HOH . P 7 HOH A 47 547 48 HOH HOH . P 7 HOH A 48 548 17 HOH HOH . P 7 HOH A 49 549 117 HOH HOH . P 7 HOH A 50 550 86 HOH HOH . P 7 HOH A 51 551 209 HOH HOH . P 7 HOH A 52 552 121 HOH HOH . P 7 HOH A 53 553 179 HOH HOH . P 7 HOH A 54 554 230 HOH HOH . P 7 HOH A 55 555 122 HOH HOH . P 7 HOH A 56 556 147 HOH HOH . P 7 HOH A 57 557 137 HOH HOH . P 7 HOH A 58 558 24 HOH HOH . P 7 HOH A 59 559 132 HOH HOH . P 7 HOH A 60 560 53 HOH HOH . P 7 HOH A 61 561 91 HOH HOH . P 7 HOH A 62 562 54 HOH HOH . P 7 HOH A 63 563 172 HOH HOH . P 7 HOH A 64 564 95 HOH HOH . P 7 HOH A 65 565 83 HOH HOH . P 7 HOH A 66 566 106 HOH HOH . P 7 HOH A 67 567 69 HOH HOH . P 7 HOH A 68 568 71 HOH HOH . P 7 HOH A 69 569 214 HOH HOH . P 7 HOH A 70 570 116 HOH HOH . P 7 HOH A 71 571 120 HOH HOH . P 7 HOH A 72 572 51 HOH HOH . P 7 HOH A 73 573 139 HOH HOH . P 7 HOH A 74 574 146 HOH HOH . P 7 HOH A 75 575 29 HOH HOH . P 7 HOH A 76 576 127 HOH HOH . P 7 HOH A 77 577 67 HOH HOH . P 7 HOH A 78 578 222 HOH HOH . P 7 HOH A 79 579 219 HOH HOH . P 7 HOH A 80 580 210 HOH HOH . P 7 HOH A 81 581 157 HOH HOH . P 7 HOH A 82 582 131 HOH HOH . P 7 HOH A 83 583 140 HOH HOH . P 7 HOH A 84 584 202 HOH HOH . P 7 HOH A 85 585 89 HOH HOH . P 7 HOH A 86 586 197 HOH HOH . P 7 HOH A 87 587 201 HOH HOH . P 7 HOH A 88 588 194 HOH HOH . P 7 HOH A 89 589 208 HOH HOH . P 7 HOH A 90 590 98 HOH HOH . P 7 HOH A 91 591 119 HOH HOH . P 7 HOH A 92 592 213 HOH HOH . Q 7 HOH B 1 501 161 HOH HOH . Q 7 HOH B 2 502 189 HOH HOH . Q 7 HOH B 3 503 228 HOH HOH . Q 7 HOH B 4 504 227 HOH HOH . Q 7 HOH B 5 505 181 HOH HOH . Q 7 HOH B 6 506 31 HOH HOH . Q 7 HOH B 7 507 212 HOH HOH . Q 7 HOH B 8 508 36 HOH HOH . Q 7 HOH B 9 509 25 HOH HOH . Q 7 HOH B 10 510 153 HOH HOH . Q 7 HOH B 11 511 9 HOH HOH . Q 7 HOH B 12 512 47 HOH HOH . Q 7 HOH B 13 513 149 HOH HOH . Q 7 HOH B 14 514 3 HOH HOH . Q 7 HOH B 15 515 166 HOH HOH . Q 7 HOH B 16 516 125 HOH HOH . Q 7 HOH B 17 517 12 HOH HOH . Q 7 HOH B 18 518 182 HOH HOH . Q 7 HOH B 19 519 1 HOH HOH . Q 7 HOH B 20 520 40 HOH HOH . Q 7 HOH B 21 521 58 HOH HOH . Q 7 HOH B 22 522 107 HOH HOH . Q 7 HOH B 23 523 76 HOH HOH . Q 7 HOH B 24 524 74 HOH HOH . Q 7 HOH B 25 525 33 HOH HOH . Q 7 HOH B 26 526 138 HOH HOH . Q 7 HOH B 27 527 13 HOH HOH . Q 7 HOH B 28 528 55 HOH HOH . Q 7 HOH B 29 529 102 HOH HOH . Q 7 HOH B 30 530 77 HOH HOH . Q 7 HOH B 31 531 94 HOH HOH . Q 7 HOH B 32 532 151 HOH HOH . Q 7 HOH B 33 533 14 HOH HOH . Q 7 HOH B 34 534 38 HOH HOH . Q 7 HOH B 35 535 4 HOH HOH . Q 7 HOH B 36 536 26 HOH HOH . Q 7 HOH B 37 537 35 HOH HOH . Q 7 HOH B 38 538 124 HOH HOH . Q 7 HOH B 39 539 64 HOH HOH . Q 7 HOH B 40 540 37 HOH HOH . Q 7 HOH B 41 541 73 HOH HOH . Q 7 HOH B 42 542 75 HOH HOH . Q 7 HOH B 43 543 44 HOH HOH . Q 7 HOH B 44 544 87 HOH HOH . Q 7 HOH B 45 545 112 HOH HOH . Q 7 HOH B 46 546 30 HOH HOH . Q 7 HOH B 47 547 72 HOH HOH . Q 7 HOH B 48 548 99 HOH HOH . Q 7 HOH B 49 549 7 HOH HOH . Q 7 HOH B 50 550 59 HOH HOH . Q 7 HOH B 51 551 5 HOH HOH . Q 7 HOH B 52 552 163 HOH HOH . Q 7 HOH B 53 553 129 HOH HOH . Q 7 HOH B 54 554 2 HOH HOH . Q 7 HOH B 55 555 111 HOH HOH . Q 7 HOH B 56 556 49 HOH HOH . Q 7 HOH B 57 557 174 HOH HOH . Q 7 HOH B 58 558 68 HOH HOH . Q 7 HOH B 59 559 110 HOH HOH . Q 7 HOH B 60 560 23 HOH HOH . Q 7 HOH B 61 561 190 HOH HOH . Q 7 HOH B 62 562 113 HOH HOH . Q 7 HOH B 63 563 82 HOH HOH . Q 7 HOH B 64 564 199 HOH HOH . Q 7 HOH B 65 565 173 HOH HOH . Q 7 HOH B 66 566 92 HOH HOH . Q 7 HOH B 67 567 97 HOH HOH . Q 7 HOH B 68 568 136 HOH HOH . Q 7 HOH B 69 569 19 HOH HOH . Q 7 HOH B 70 570 8 HOH HOH . Q 7 HOH B 71 571 185 HOH HOH . Q 7 HOH B 72 572 50 HOH HOH . Q 7 HOH B 73 573 100 HOH HOH . Q 7 HOH B 74 574 39 HOH HOH . Q 7 HOH B 75 575 20 HOH HOH . Q 7 HOH B 76 576 142 HOH HOH . Q 7 HOH B 77 577 126 HOH HOH . Q 7 HOH B 78 578 41 HOH HOH . Q 7 HOH B 79 579 34 HOH HOH . Q 7 HOH B 80 580 16 HOH HOH . Q 7 HOH B 81 581 108 HOH HOH . Q 7 HOH B 82 582 159 HOH HOH . Q 7 HOH B 83 583 169 HOH HOH . Q 7 HOH B 84 584 207 HOH HOH . Q 7 HOH B 85 585 61 HOH HOH . Q 7 HOH B 86 586 211 HOH HOH . Q 7 HOH B 87 587 28 HOH HOH . Q 7 HOH B 88 588 177 HOH HOH . Q 7 HOH B 89 589 145 HOH HOH . Q 7 HOH B 90 590 160 HOH HOH . Q 7 HOH B 91 591 200 HOH HOH . Q 7 HOH B 92 592 196 HOH HOH . Q 7 HOH B 93 593 63 HOH HOH . Q 7 HOH B 94 594 178 HOH HOH . Q 7 HOH B 95 595 217 HOH HOH . Q 7 HOH B 96 596 133 HOH HOH . Q 7 HOH B 97 597 218 HOH HOH . Q 7 HOH B 98 598 96 HOH HOH . Q 7 HOH B 99 599 226 HOH HOH . Q 7 HOH B 100 600 180 HOH HOH . Q 7 HOH B 101 601 79 HOH HOH . Q 7 HOH B 102 602 141 HOH HOH . Q 7 HOH B 103 603 193 HOH HOH . Q 7 HOH B 104 604 103 HOH HOH . Q 7 HOH B 105 605 168 HOH HOH . Q 7 HOH B 106 606 195 HOH HOH . Q 7 HOH B 107 607 205 HOH HOH . Q 7 HOH B 108 608 155 HOH HOH . Q 7 HOH B 109 609 128 HOH HOH . Q 7 HOH B 110 610 206 HOH HOH . Q 7 HOH B 111 611 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 5 _atom_site.Cartn_x 26.036 _atom_site.Cartn_y 42.745 _atom_site.Cartn_z 18.066 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #