data_6EJZ
#
_model_server_result.job_id            -rHoftDsNRgzrBbdwcWOlQ 
_model_server_result.datetime_utc      '2024-11-01 11:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ejz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":204}' 
#
_entry.id    6EJZ 
#
_exptl.entry_id    6EJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6EJZ 
_cell.length_a            82.44 
_cell.length_b            82.44 
_cell.length_c            75.65 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6EJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,M,N,O,P,Q,W,Y 1 1 
B,D,I,J,K,L,R,S,T,U,V,X,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            NH1 
_struct_conn.ptnr1_label_comp_id            ARG 
_struct_conn.ptnr1_label_seq_id             15 
_struct_conn.ptnr1_auth_asym_id             D 
_struct_conn.ptnr1_auth_comp_id             ARG 
_struct_conn.ptnr1_auth_seq_id              15 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            V 
_struct_conn.ptnr2_label_atom_id            O3 
_struct_conn.ptnr2_label_comp_id            IAC 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             D 
_struct_conn.ptnr2_auth_comp_id             IAC 
_struct_conn.ptnr2_auth_seq_id              205 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.3 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     6EJZ 
_atom_sites.fract_transf_matrix[1][1]    0.01213 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01213 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IAC A 1 201 120 IAC IAC . 
F 3 EDO A 1 202 1 EDO EDO . 
G 3 EDO A 1 203 5 EDO EDO . 
H 3 EDO A 1 204 11 EDO EDO . 
I 2 IAC B 1 201 120 IAC IAC . 
J 3 EDO B 1 202 2 EDO EDO . 
K 3 EDO B 1 203 4 EDO EDO . 
L 3 EDO B 1 204 8 EDO EDO . 
M 2 IAC C 1 201 120 IAC IAC . 
N 3 EDO C 1 202 3 EDO EDO . 
O 3 EDO C 1 203 7 EDO EDO . 
P 3 EDO C 1 204 12 EDO EDO . 
Q 4 SO4 C 1 205 13 SO4 SO4 . 
R 2 IAC D 1 201 120 IAC IAC . 
S 3 EDO D 1 202 6 EDO EDO . 
T 3 EDO D 1 203 9 EDO EDO . 
U 3 EDO D 1 204 10 EDO EDO . 
V 2 IAC D 1 205 14 IAC IAC . 
W 5 HOH A 1 301 99 HOH HOH . 
W 5 HOH A 2 302 71 HOH HOH . 
W 5 HOH A 3 303 149 HOH HOH . 
W 5 HOH A 4 304 31 HOH HOH . 
W 5 HOH A 5 305 84 HOH HOH . 
W 5 HOH A 6 306 12 HOH HOH . 
W 5 HOH A 7 307 113 HOH HOH . 
W 5 HOH A 8 308 26 HOH HOH . 
W 5 HOH A 9 309 48 HOH HOH . 
W 5 HOH A 10 310 164 HOH HOH . 
W 5 HOH A 11 311 33 HOH HOH . 
W 5 HOH A 12 312 44 HOH HOH . 
W 5 HOH A 13 313 122 HOH HOH . 
W 5 HOH A 14 314 83 HOH HOH . 
W 5 HOH A 15 315 146 HOH HOH . 
W 5 HOH A 16 316 115 HOH HOH . 
W 5 HOH A 17 317 23 HOH HOH . 
W 5 HOH A 18 318 73 HOH HOH . 
W 5 HOH A 19 319 126 HOH HOH . 
W 5 HOH A 20 320 38 HOH HOH . 
W 5 HOH A 21 321 143 HOH HOH . 
W 5 HOH A 22 322 103 HOH HOH . 
W 5 HOH A 23 323 65 HOH HOH . 
W 5 HOH A 24 324 28 HOH HOH . 
W 5 HOH A 25 325 89 HOH HOH . 
W 5 HOH A 26 326 171 HOH HOH . 
W 5 HOH A 27 327 100 HOH HOH . 
W 5 HOH A 28 328 53 HOH HOH . 
W 5 HOH A 29 329 147 HOH HOH . 
W 5 HOH A 30 330 134 HOH HOH . 
W 5 HOH A 31 331 191 HOH HOH . 
W 5 HOH A 32 332 110 HOH HOH . 
W 5 HOH A 33 333 157 HOH HOH . 
W 5 HOH A 34 334 88 HOH HOH . 
W 5 HOH A 35 335 36 HOH HOH . 
W 5 HOH A 36 336 10 HOH HOH . 
W 5 HOH A 37 337 123 HOH HOH . 
W 5 HOH A 38 338 81 HOH HOH . 
W 5 HOH A 39 339 80 HOH HOH . 
W 5 HOH A 40 340 43 HOH HOH . 
W 5 HOH A 41 341 194 HOH HOH . 
W 5 HOH A 42 342 145 HOH HOH . 
W 5 HOH A 43 343 202 HOH HOH . 
W 5 HOH A 44 344 179 HOH HOH . 
W 5 HOH A 45 345 212 HOH HOH . 
W 5 HOH A 46 346 133 HOH HOH . 
W 5 HOH A 47 347 177 HOH HOH . 
W 5 HOH A 48 348 63 HOH HOH . 
W 5 HOH A 49 349 144 HOH HOH . 
W 5 HOH A 50 350 82 HOH HOH . 
W 5 HOH A 51 351 206 HOH HOH . 
W 5 HOH A 52 352 79 HOH HOH . 
W 5 HOH A 53 353 195 HOH HOH . 
W 5 HOH A 54 354 109 HOH HOH . 
W 5 HOH A 55 355 118 HOH HOH . 
W 5 HOH A 56 356 200 HOH HOH . 
W 5 HOH A 57 357 60 HOH HOH . 
W 5 HOH A 58 358 208 HOH HOH . 
W 5 HOH A 59 359 136 HOH HOH . 
W 5 HOH A 60 360 209 HOH HOH . 
W 5 HOH A 61 361 215 HOH HOH . 
X 5 HOH B 1 301 153 HOH HOH . 
X 5 HOH B 2 302 193 HOH HOH . 
X 5 HOH B 3 303 9 HOH HOH . 
X 5 HOH B 4 304 129 HOH HOH . 
X 5 HOH B 5 305 24 HOH HOH . 
X 5 HOH B 6 306 68 HOH HOH . 
X 5 HOH B 7 307 29 HOH HOH . 
X 5 HOH B 8 308 114 HOH HOH . 
X 5 HOH B 9 309 127 HOH HOH . 
X 5 HOH B 10 310 120 HOH HOH . 
X 5 HOH B 11 311 2 HOH HOH . 
X 5 HOH B 12 312 8 HOH HOH . 
X 5 HOH B 13 313 46 HOH HOH . 
X 5 HOH B 14 314 6 HOH HOH . 
X 5 HOH B 15 315 59 HOH HOH . 
X 5 HOH B 16 316 16 HOH HOH . 
X 5 HOH B 17 317 51 HOH HOH . 
X 5 HOH B 18 318 148 HOH HOH . 
X 5 HOH B 19 319 213 HOH HOH . 
X 5 HOH B 20 320 35 HOH HOH . 
X 5 HOH B 21 321 58 HOH HOH . 
X 5 HOH B 22 322 106 HOH HOH . 
X 5 HOH B 23 323 107 HOH HOH . 
X 5 HOH B 24 324 163 HOH HOH . 
X 5 HOH B 25 325 69 HOH HOH . 
X 5 HOH B 26 326 138 HOH HOH . 
X 5 HOH B 27 327 1 HOH HOH . 
X 5 HOH B 28 328 111 HOH HOH . 
X 5 HOH B 29 329 20 HOH HOH . 
X 5 HOH B 30 330 172 HOH HOH . 
X 5 HOH B 31 331 102 HOH HOH . 
X 5 HOH B 32 332 93 HOH HOH . 
X 5 HOH B 33 333 37 HOH HOH . 
X 5 HOH B 34 334 165 HOH HOH . 
X 5 HOH B 35 335 30 HOH HOH . 
X 5 HOH B 36 336 121 HOH HOH . 
X 5 HOH B 37 337 117 HOH HOH . 
X 5 HOH B 38 338 131 HOH HOH . 
X 5 HOH B 39 339 196 HOH HOH . 
X 5 HOH B 40 340 204 HOH HOH . 
X 5 HOH B 41 341 182 HOH HOH . 
X 5 HOH B 42 342 139 HOH HOH . 
X 5 HOH B 43 343 154 HOH HOH . 
X 5 HOH B 44 344 86 HOH HOH . 
X 5 HOH B 45 345 25 HOH HOH . 
X 5 HOH B 46 346 207 HOH HOH . 
X 5 HOH B 47 347 128 HOH HOH . 
X 5 HOH B 48 348 220 HOH HOH . 
X 5 HOH B 49 349 140 HOH HOH . 
X 5 HOH B 50 350 198 HOH HOH . 
Y 5 HOH C 1 301 50 HOH HOH . 
Y 5 HOH C 2 302 32 HOH HOH . 
Y 5 HOH C 3 303 169 HOH HOH . 
Y 5 HOH C 4 304 104 HOH HOH . 
Y 5 HOH C 5 305 57 HOH HOH . 
Y 5 HOH C 6 306 67 HOH HOH . 
Y 5 HOH C 7 307 141 HOH HOH . 
Y 5 HOH C 8 308 160 HOH HOH . 
Y 5 HOH C 9 309 3 HOH HOH . 
Y 5 HOH C 10 310 112 HOH HOH . 
Y 5 HOH C 11 311 161 HOH HOH . 
Y 5 HOH C 12 312 34 HOH HOH . 
Y 5 HOH C 13 313 13 HOH HOH . 
Y 5 HOH C 14 314 19 HOH HOH . 
Y 5 HOH C 15 315 85 HOH HOH . 
Y 5 HOH C 16 316 17 HOH HOH . 
Y 5 HOH C 17 317 52 HOH HOH . 
Y 5 HOH C 18 318 22 HOH HOH . 
Y 5 HOH C 19 319 155 HOH HOH . 
Y 5 HOH C 20 320 95 HOH HOH . 
Y 5 HOH C 21 321 7 HOH HOH . 
Y 5 HOH C 22 322 56 HOH HOH . 
Y 5 HOH C 23 323 87 HOH HOH . 
Y 5 HOH C 24 324 152 HOH HOH . 
Y 5 HOH C 25 325 174 HOH HOH . 
Y 5 HOH C 26 326 159 HOH HOH . 
Y 5 HOH C 27 327 76 HOH HOH . 
Y 5 HOH C 28 328 11 HOH HOH . 
Y 5 HOH C 29 329 66 HOH HOH . 
Y 5 HOH C 30 330 180 HOH HOH . 
Y 5 HOH C 31 331 135 HOH HOH . 
Y 5 HOH C 32 332 55 HOH HOH . 
Y 5 HOH C 33 333 62 HOH HOH . 
Y 5 HOH C 34 334 192 HOH HOH . 
Y 5 HOH C 35 335 132 HOH HOH . 
Y 5 HOH C 36 336 105 HOH HOH . 
Y 5 HOH C 37 337 96 HOH HOH . 
Y 5 HOH C 38 338 97 HOH HOH . 
Y 5 HOH C 39 339 27 HOH HOH . 
Y 5 HOH C 40 340 214 HOH HOH . 
Y 5 HOH C 41 341 108 HOH HOH . 
Y 5 HOH C 42 342 41 HOH HOH . 
Y 5 HOH C 43 343 181 HOH HOH . 
Y 5 HOH C 44 344 203 HOH HOH . 
Y 5 HOH C 45 345 205 HOH HOH . 
Y 5 HOH C 46 346 78 HOH HOH . 
Y 5 HOH C 47 347 77 HOH HOH . 
Y 5 HOH C 48 348 75 HOH HOH . 
Y 5 HOH C 49 349 210 HOH HOH . 
Y 5 HOH C 50 350 188 HOH HOH . 
Y 5 HOH C 51 351 199 HOH HOH . 
Y 5 HOH C 52 352 190 HOH HOH . 
Y 5 HOH C 53 353 74 HOH HOH . 
Y 5 HOH C 54 354 216 HOH HOH . 
Z 5 HOH D 1 301 151 HOH HOH . 
Z 5 HOH D 2 302 119 HOH HOH . 
Z 5 HOH D 3 303 197 HOH HOH . 
Z 5 HOH D 4 304 184 HOH HOH . 
Z 5 HOH D 5 305 217 HOH HOH . 
Z 5 HOH D 6 306 185 HOH HOH . 
Z 5 HOH D 7 307 54 HOH HOH . 
Z 5 HOH D 8 308 45 HOH HOH . 
Z 5 HOH D 9 309 116 HOH HOH . 
Z 5 HOH D 10 310 91 HOH HOH . 
Z 5 HOH D 11 311 178 HOH HOH . 
Z 5 HOH D 12 312 137 HOH HOH . 
Z 5 HOH D 13 313 42 HOH HOH . 
Z 5 HOH D 14 314 218 HOH HOH . 
Z 5 HOH D 15 315 101 HOH HOH . 
Z 5 HOH D 16 316 162 HOH HOH . 
Z 5 HOH D 17 317 189 HOH HOH . 
Z 5 HOH D 18 318 18 HOH HOH . 
Z 5 HOH D 19 319 4 HOH HOH . 
Z 5 HOH D 20 320 186 HOH HOH . 
Z 5 HOH D 21 321 124 HOH HOH . 
Z 5 HOH D 22 322 92 HOH HOH . 
Z 5 HOH D 23 323 187 HOH HOH . 
Z 5 HOH D 24 324 72 HOH HOH . 
Z 5 HOH D 25 325 168 HOH HOH . 
Z 5 HOH D 26 326 90 HOH HOH . 
Z 5 HOH D 27 327 98 HOH HOH . 
Z 5 HOH D 28 328 156 HOH HOH . 
Z 5 HOH D 29 329 15 HOH HOH . 
Z 5 HOH D 30 330 201 HOH HOH . 
Z 5 HOH D 31 331 5 HOH HOH . 
Z 5 HOH D 32 332 176 HOH HOH . 
Z 5 HOH D 33 333 70 HOH HOH . 
Z 5 HOH D 34 334 21 HOH HOH . 
Z 5 HOH D 35 335 64 HOH HOH . 
Z 5 HOH D 36 336 158 HOH HOH . 
Z 5 HOH D 37 337 47 HOH HOH . 
Z 5 HOH D 38 338 40 HOH HOH . 
Z 5 HOH D 39 339 14 HOH HOH . 
Z 5 HOH D 40 340 173 HOH HOH . 
Z 5 HOH D 41 341 170 HOH HOH . 
Z 5 HOH D 42 342 49 HOH HOH . 
Z 5 HOH D 43 343 94 HOH HOH . 
Z 5 HOH D 44 344 39 HOH HOH . 
Z 5 HOH D 45 345 167 HOH HOH . 
Z 5 HOH D 46 346 125 HOH HOH . 
Z 5 HOH D 47 347 150 HOH HOH . 
Z 5 HOH D 48 348 166 HOH HOH . 
Z 5 HOH D 49 349 142 HOH HOH . 
Z 5 HOH D 50 350 211 HOH HOH . 
Z 5 HOH D 51 351 61 HOH HOH . 
Z 5 HOH D 52 352 183 HOH HOH . 
Z 5 HOH D 53 353 130 HOH HOH . 
Z 5 HOH D 54 354 175 HOH HOH . 
Z 5 HOH D 55 355 219 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . P 3 37.771 -13.063 4.045 1 57 ? C1 EDO 204 C 1 
HETATM 2 O O1 EDO . . . P 3 36.601 -13.684 3.485 1 53.97 ? O1 EDO 204 C 1 
HETATM 3 C C2 EDO . . . P 3 37.695 -13.11 5.569 1 53.8 ? C2 EDO 204 C 1 
HETATM 4 O O2 EDO . . . P 3 38.743 -12.331 6.148 1 44.84 ? O2 EDO 204 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#