data_6EK4 # _model_server_result.job_id jUFmEmpWrJVaIPO3OE8-nA _model_server_result.datetime_utc '2024-11-04 23:02:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ek4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6EK4 # _exptl.entry_id 6EK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.41 _cell.angle_gamma 90 _cell.entry_id 6EK4 _cell.length_a 104.59 _cell.length_b 70.18 _cell.length_c 136.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,I 1 1 B,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 56 A ASP 56 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc2 A OE1 GLU 59 A GLU 59 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc3 A OD1 ASP 139 A ASP 139 1_555 F NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc4 E NA NA . A NA 401 1_555 B OD1 ASP 139 B ASP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc5 F NA NA . A NA 402 1_555 B OD1 ASP 56 B ASP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc6 F NA NA . A NA 402 1_555 B OE1 GLU 59 B GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc7 C OD1 ASP 56 C ASP 56 1_555 G NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc8 C OE1 GLU 59 C GLU 59 1_555 G NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc9 G NA NA . C NA 401 1_555 D OD1 ASP 139 D ASP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc10 K O HOH . C HOH 521 1_555 H NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc11 D OD1 ASP 56 D ASP 56 1_555 H NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc12 D OE1 GLU 59 D GLU 59 1_555 H NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc13 H NA NA . D NA 401 1_555 L O HOH . D HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6EK4 _atom_sites.fract_transf_matrix[1][1] 0.009561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003182 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 401 1 NA NA . F 2 NA A 1 402 2 NA NA . G 2 NA C 1 401 3 NA NA . H 2 NA D 1 401 4 NA NA . I 3 HOH A 1 501 117 HOH HOH . I 3 HOH A 2 502 81 HOH HOH . I 3 HOH A 3 503 199 HOH HOH . I 3 HOH A 4 504 168 HOH HOH . I 3 HOH A 5 505 37 HOH HOH . I 3 HOH A 6 506 181 HOH HOH . I 3 HOH A 7 507 216 HOH HOH . I 3 HOH A 8 508 226 HOH HOH . I 3 HOH A 9 509 26 HOH HOH . I 3 HOH A 10 510 53 HOH HOH . I 3 HOH A 11 511 14 HOH HOH . I 3 HOH A 12 512 193 HOH HOH . I 3 HOH A 13 513 119 HOH HOH . I 3 HOH A 14 514 70 HOH HOH . I 3 HOH A 15 515 27 HOH HOH . I 3 HOH A 16 516 103 HOH HOH . I 3 HOH A 17 517 157 HOH HOH . I 3 HOH A 18 518 135 HOH HOH . I 3 HOH A 19 519 11 HOH HOH . I 3 HOH A 20 520 67 HOH HOH . I 3 HOH A 21 521 158 HOH HOH . I 3 HOH A 22 522 15 HOH HOH . I 3 HOH A 23 523 136 HOH HOH . I 3 HOH A 24 524 121 HOH HOH . I 3 HOH A 25 525 36 HOH HOH . I 3 HOH A 26 526 212 HOH HOH . I 3 HOH A 27 527 195 HOH HOH . I 3 HOH A 28 528 20 HOH HOH . I 3 HOH A 29 529 77 HOH HOH . I 3 HOH A 30 530 146 HOH HOH . I 3 HOH A 31 531 112 HOH HOH . I 3 HOH A 32 532 100 HOH HOH . I 3 HOH A 33 533 131 HOH HOH . I 3 HOH A 34 534 148 HOH HOH . I 3 HOH A 35 535 31 HOH HOH . I 3 HOH A 36 536 78 HOH HOH . I 3 HOH A 37 537 180 HOH HOH . I 3 HOH A 38 538 113 HOH HOH . I 3 HOH A 39 539 172 HOH HOH . I 3 HOH A 40 540 74 HOH HOH . I 3 HOH A 41 541 61 HOH HOH . I 3 HOH A 42 542 186 HOH HOH . I 3 HOH A 43 543 83 HOH HOH . I 3 HOH A 44 544 6 HOH HOH . I 3 HOH A 45 545 87 HOH HOH . I 3 HOH A 46 546 51 HOH HOH . I 3 HOH A 47 547 178 HOH HOH . I 3 HOH A 48 548 142 HOH HOH . I 3 HOH A 49 549 153 HOH HOH . I 3 HOH A 50 550 202 HOH HOH . I 3 HOH A 51 551 107 HOH HOH . I 3 HOH A 52 552 149 HOH HOH . I 3 HOH A 53 553 122 HOH HOH . I 3 HOH A 54 554 211 HOH HOH . I 3 HOH A 55 555 86 HOH HOH . J 3 HOH B 1 501 133 HOH HOH . J 3 HOH B 2 502 130 HOH HOH . J 3 HOH B 3 503 207 HOH HOH . J 3 HOH B 4 504 12 HOH HOH . J 3 HOH B 5 505 17 HOH HOH . J 3 HOH B 6 506 56 HOH HOH . J 3 HOH B 7 507 54 HOH HOH . J 3 HOH B 8 508 50 HOH HOH . J 3 HOH B 9 509 198 HOH HOH . J 3 HOH B 10 510 60 HOH HOH . J 3 HOH B 11 511 91 HOH HOH . J 3 HOH B 12 512 124 HOH HOH . J 3 HOH B 13 513 39 HOH HOH . J 3 HOH B 14 514 7 HOH HOH . J 3 HOH B 15 515 167 HOH HOH . J 3 HOH B 16 516 214 HOH HOH . J 3 HOH B 17 517 192 HOH HOH . J 3 HOH B 18 518 46 HOH HOH . J 3 HOH B 19 519 147 HOH HOH . J 3 HOH B 20 520 174 HOH HOH . J 3 HOH B 21 521 40 HOH HOH . J 3 HOH B 22 522 35 HOH HOH . J 3 HOH B 23 523 159 HOH HOH . J 3 HOH B 24 524 23 HOH HOH . J 3 HOH B 25 525 123 HOH HOH . J 3 HOH B 26 526 128 HOH HOH . J 3 HOH B 27 527 66 HOH HOH . J 3 HOH B 28 528 141 HOH HOH . J 3 HOH B 29 529 9 HOH HOH . J 3 HOH B 30 530 82 HOH HOH . J 3 HOH B 31 531 55 HOH HOH . J 3 HOH B 32 532 134 HOH HOH . J 3 HOH B 33 533 205 HOH HOH . J 3 HOH B 34 534 118 HOH HOH . J 3 HOH B 35 535 155 HOH HOH . J 3 HOH B 36 536 24 HOH HOH . J 3 HOH B 37 537 222 HOH HOH . J 3 HOH B 38 538 187 HOH HOH . J 3 HOH B 39 539 101 HOH HOH . J 3 HOH B 40 540 144 HOH HOH . J 3 HOH B 41 541 28 HOH HOH . J 3 HOH B 42 542 154 HOH HOH . J 3 HOH B 43 543 73 HOH HOH . J 3 HOH B 44 544 209 HOH HOH . J 3 HOH B 45 545 196 HOH HOH . J 3 HOH B 46 546 183 HOH HOH . J 3 HOH B 47 547 106 HOH HOH . J 3 HOH B 48 548 94 HOH HOH . J 3 HOH B 49 549 169 HOH HOH . J 3 HOH B 50 550 88 HOH HOH . J 3 HOH B 51 551 229 HOH HOH . J 3 HOH B 52 552 137 HOH HOH . J 3 HOH B 53 553 116 HOH HOH . K 3 HOH C 1 501 16 HOH HOH . K 3 HOH C 2 502 95 HOH HOH . K 3 HOH C 3 503 63 HOH HOH . K 3 HOH C 4 504 114 HOH HOH . K 3 HOH C 5 505 218 HOH HOH . K 3 HOH C 6 506 221 HOH HOH . K 3 HOH C 7 507 200 HOH HOH . K 3 HOH C 8 508 109 HOH HOH . K 3 HOH C 9 509 75 HOH HOH . K 3 HOH C 10 510 201 HOH HOH . K 3 HOH C 11 511 179 HOH HOH . K 3 HOH C 12 512 126 HOH HOH . K 3 HOH C 13 513 76 HOH HOH . K 3 HOH C 14 514 71 HOH HOH . K 3 HOH C 15 515 47 HOH HOH . K 3 HOH C 16 516 41 HOH HOH . K 3 HOH C 17 517 224 HOH HOH . K 3 HOH C 18 518 213 HOH HOH . K 3 HOH C 19 519 145 HOH HOH . K 3 HOH C 20 520 166 HOH HOH . K 3 HOH C 21 521 184 HOH HOH . K 3 HOH C 22 522 219 HOH HOH . K 3 HOH C 23 523 34 HOH HOH . K 3 HOH C 24 524 127 HOH HOH . K 3 HOH C 25 525 173 HOH HOH . K 3 HOH C 26 526 10 HOH HOH . K 3 HOH C 27 527 96 HOH HOH . K 3 HOH C 28 528 68 HOH HOH . K 3 HOH C 29 529 43 HOH HOH . K 3 HOH C 30 530 85 HOH HOH . K 3 HOH C 31 531 220 HOH HOH . K 3 HOH C 32 532 125 HOH HOH . K 3 HOH C 33 533 164 HOH HOH . K 3 HOH C 34 534 177 HOH HOH . K 3 HOH C 35 535 58 HOH HOH . K 3 HOH C 36 536 151 HOH HOH . K 3 HOH C 37 537 18 HOH HOH . K 3 HOH C 38 538 171 HOH HOH . K 3 HOH C 39 539 44 HOH HOH . K 3 HOH C 40 540 215 HOH HOH . K 3 HOH C 41 541 208 HOH HOH . K 3 HOH C 42 542 69 HOH HOH . K 3 HOH C 43 543 29 HOH HOH . K 3 HOH C 44 544 129 HOH HOH . K 3 HOH C 45 545 156 HOH HOH . K 3 HOH C 46 546 84 HOH HOH . K 3 HOH C 47 547 25 HOH HOH . K 3 HOH C 48 548 104 HOH HOH . K 3 HOH C 49 549 65 HOH HOH . K 3 HOH C 50 550 152 HOH HOH . K 3 HOH C 51 551 140 HOH HOH . K 3 HOH C 52 552 99 HOH HOH . L 3 HOH D 1 501 203 HOH HOH . L 3 HOH D 2 502 30 HOH HOH . L 3 HOH D 3 503 80 HOH HOH . L 3 HOH D 4 504 210 HOH HOH . L 3 HOH D 5 505 170 HOH HOH . L 3 HOH D 6 506 225 HOH HOH . L 3 HOH D 7 507 97 HOH HOH . L 3 HOH D 8 508 223 HOH HOH . L 3 HOH D 9 509 57 HOH HOH . L 3 HOH D 10 510 206 HOH HOH . L 3 HOH D 11 511 32 HOH HOH . L 3 HOH D 12 512 21 HOH HOH . L 3 HOH D 13 513 139 HOH HOH . L 3 HOH D 14 514 182 HOH HOH . L 3 HOH D 15 515 204 HOH HOH . L 3 HOH D 16 516 108 HOH HOH . L 3 HOH D 17 517 49 HOH HOH . L 3 HOH D 18 518 13 HOH HOH . L 3 HOH D 19 519 59 HOH HOH . L 3 HOH D 20 520 62 HOH HOH . L 3 HOH D 21 521 45 HOH HOH . L 3 HOH D 22 522 150 HOH HOH . L 3 HOH D 23 523 22 HOH HOH . L 3 HOH D 24 524 90 HOH HOH . L 3 HOH D 25 525 185 HOH HOH . L 3 HOH D 26 526 33 HOH HOH . L 3 HOH D 27 527 165 HOH HOH . L 3 HOH D 28 528 120 HOH HOH . L 3 HOH D 29 529 161 HOH HOH . L 3 HOH D 30 530 190 HOH HOH . L 3 HOH D 31 531 89 HOH HOH . L 3 HOH D 32 532 98 HOH HOH . L 3 HOH D 33 533 92 HOH HOH . L 3 HOH D 34 534 110 HOH HOH . L 3 HOH D 35 535 162 HOH HOH . L 3 HOH D 36 536 230 HOH HOH . L 3 HOH D 37 537 227 HOH HOH . L 3 HOH D 38 538 175 HOH HOH . L 3 HOH D 39 539 42 HOH HOH . L 3 HOH D 40 540 176 HOH HOH . L 3 HOH D 41 541 197 HOH HOH . L 3 HOH D 42 542 143 HOH HOH . L 3 HOH D 43 543 79 HOH HOH . L 3 HOH D 44 544 228 HOH HOH . L 3 HOH D 45 545 217 HOH HOH . L 3 HOH D 46 546 163 HOH HOH . L 3 HOH D 47 547 102 HOH HOH . L 3 HOH D 48 548 111 HOH HOH . L 3 HOH D 49 549 5 HOH HOH . L 3 HOH D 50 550 48 HOH HOH . L 3 HOH D 51 551 72 HOH HOH . L 3 HOH D 52 552 38 HOH HOH . L 3 HOH D 53 553 8 HOH HOH . L 3 HOH D 54 554 93 HOH HOH . L 3 HOH D 55 555 138 HOH HOH . L 3 HOH D 56 556 191 HOH HOH . L 3 HOH D 57 557 19 HOH HOH . L 3 HOH D 58 558 64 HOH HOH . L 3 HOH D 59 559 132 HOH HOH . L 3 HOH D 60 560 52 HOH HOH . L 3 HOH D 61 561 115 HOH HOH . L 3 HOH D 62 562 188 HOH HOH . L 3 HOH D 63 563 160 HOH HOH . L 3 HOH D 64 564 105 HOH HOH . L 3 HOH D 65 565 189 HOH HOH . L 3 HOH D 66 566 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.533 _atom_site.Cartn_y -33.593 _atom_site.Cartn_z -30.882 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #