data_6EK6 # _model_server_result.job_id lWGPwJ-iB-yKZeycQpdtEA _model_server_result.datetime_utc '2024-11-24 05:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ek6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 6EK6 # _exptl.entry_id 6EK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6EK6 _cell.length_a 141.41 _cell.length_b 141.41 _cell.length_c 150.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6EK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 409 A CYS 708 1_555 A SG CYS 426 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OD1 ASN 67 A ASN 91 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc2 A O LEU 114 A LEU 413 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A O THR 117 A THR 416 1_555 C MN MN . A MN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 A NE2 HIS 200 A HIS 499 1_555 D NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc5 A OE2 GLU 202 A GLU 501 1_555 D NI NI . A NI 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 A SG CYS 393 A CYS 692 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc7 A SG CYS 396 A CYS 695 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 A SG CYS 416 A CYS 715 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 A ND1 HIS 419 A HIS 718 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc10 C MN MN . A MN 802 1_555 Q O HOH . A HOH 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc11 D NI NI . A NI 803 1_555 E N7 90V . A 90V 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc12 D NI NI . A NI 803 1_555 E O11 90V . A 90V 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc13 D NI NI . A NI 803 1_555 Q O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 128 n n S C1 DMS sing 129 n n S C2 DMS sing 130 n n C1 H11 DMS sing 131 n n C1 H12 DMS sing 132 n n C1 H13 DMS sing 133 n n C2 H21 DMS sing 134 n n C2 H22 DMS sing 135 n n C2 H23 DMS sing 136 n n # _atom_sites.entry_id 6EK6 _atom_sites.fract_transf_matrix[1][1] 0.007072 _atom_sites.fract_transf_matrix[1][2] 0.004083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 800 ZN ZN . C 3 MN A 1 802 801 MN MN . D 4 NI A 1 803 802 NI NI . E 5 90V A 1 804 1 90V 195 . F 6 DMS A 1 805 1 DMS DMS . G 6 DMS A 1 806 2 DMS DMS . H 6 DMS A 1 807 3 DMS DMS . I 6 DMS A 1 808 4 DMS DMS . J 7 EDO A 1 809 1 EDO EDO . K 7 EDO A 1 810 2 EDO EDO . L 7 EDO A 1 811 3 EDO EDO . M 7 EDO A 1 812 4 EDO EDO . N 7 EDO A 1 813 5 EDO EDO . O 7 EDO A 1 814 6 EDO EDO . P 7 EDO A 1 815 7 EDO EDO . Q 8 HOH A 1 901 24 HOH HOH . Q 8 HOH A 2 902 18 HOH HOH . Q 8 HOH A 3 903 46 HOH HOH . Q 8 HOH A 4 904 25 HOH HOH . Q 8 HOH A 5 905 50 HOH HOH . Q 8 HOH A 6 906 35 HOH HOH . Q 8 HOH A 7 907 125 HOH HOH . Q 8 HOH A 8 908 40 HOH HOH . Q 8 HOH A 9 909 56 HOH HOH . Q 8 HOH A 10 910 52 HOH HOH . Q 8 HOH A 11 911 115 HOH HOH . Q 8 HOH A 12 912 19 HOH HOH . Q 8 HOH A 13 913 57 HOH HOH . Q 8 HOH A 14 914 25 HOH HOH . Q 8 HOH A 15 915 7 HOH HOH . Q 8 HOH A 16 916 114 HOH HOH . Q 8 HOH A 17 917 41 HOH HOH . Q 8 HOH A 18 918 154 HOH HOH . Q 8 HOH A 19 919 63 HOH HOH . Q 8 HOH A 20 920 60 HOH HOH . Q 8 HOH A 21 921 72 HOH HOH . Q 8 HOH A 22 922 29 HOH HOH . Q 8 HOH A 23 923 5 HOH HOH . Q 8 HOH A 24 924 17 HOH HOH . Q 8 HOH A 25 925 143 HOH HOH . Q 8 HOH A 26 926 41 HOH HOH . Q 8 HOH A 27 927 91 HOH HOH . Q 8 HOH A 28 928 11 HOH HOH . Q 8 HOH A 29 929 172 HOH HOH . Q 8 HOH A 30 930 31 HOH HOH . Q 8 HOH A 31 931 81 HOH HOH . Q 8 HOH A 32 932 45 HOH HOH . Q 8 HOH A 33 933 34 HOH HOH . Q 8 HOH A 34 934 105 HOH HOH . Q 8 HOH A 35 935 50 HOH HOH . Q 8 HOH A 36 936 54 HOH HOH . Q 8 HOH A 37 937 3 HOH HOH . Q 8 HOH A 38 938 1 HOH HOH . Q 8 HOH A 39 939 27 HOH HOH . Q 8 HOH A 40 940 101 HOH HOH . Q 8 HOH A 41 941 13 HOH HOH . Q 8 HOH A 42 942 61 HOH HOH . Q 8 HOH A 43 943 56 HOH HOH . Q 8 HOH A 44 944 17 HOH HOH . Q 8 HOH A 45 945 53 HOH HOH . Q 8 HOH A 46 946 19 HOH HOH . Q 8 HOH A 47 947 15 HOH HOH . Q 8 HOH A 48 948 26 HOH HOH . Q 8 HOH A 49 949 26 HOH HOH . Q 8 HOH A 50 950 117 HOH HOH . Q 8 HOH A 51 951 8 HOH HOH . Q 8 HOH A 52 952 86 HOH HOH . Q 8 HOH A 53 953 14 HOH HOH . Q 8 HOH A 54 954 58 HOH HOH . Q 8 HOH A 55 955 63 HOH HOH . Q 8 HOH A 56 956 47 HOH HOH . Q 8 HOH A 57 957 16 HOH HOH . Q 8 HOH A 58 958 185 HOH HOH . Q 8 HOH A 59 959 70 HOH HOH . Q 8 HOH A 60 960 21 HOH HOH . Q 8 HOH A 61 961 12 HOH HOH . Q 8 HOH A 62 962 21 HOH HOH . Q 8 HOH A 63 963 132 HOH HOH . Q 8 HOH A 64 964 44 HOH HOH . Q 8 HOH A 65 965 175 HOH HOH . Q 8 HOH A 66 966 2 HOH HOH . Q 8 HOH A 67 967 160 HOH HOH . Q 8 HOH A 68 968 11 HOH HOH . Q 8 HOH A 69 969 118 HOH HOH . Q 8 HOH A 70 970 58 HOH HOH . Q 8 HOH A 71 971 31 HOH HOH . Q 8 HOH A 72 972 56 HOH HOH . Q 8 HOH A 73 973 42 HOH HOH . Q 8 HOH A 74 974 27 HOH HOH . Q 8 HOH A 75 975 26 HOH HOH . Q 8 HOH A 76 976 69 HOH HOH . Q 8 HOH A 77 977 4 HOH HOH . Q 8 HOH A 78 978 22 HOH HOH . Q 8 HOH A 79 979 44 HOH HOH . Q 8 HOH A 80 980 47 HOH HOH . Q 8 HOH A 81 981 8 HOH HOH . Q 8 HOH A 82 982 76 HOH HOH . Q 8 HOH A 83 983 5 HOH HOH . Q 8 HOH A 84 984 60 HOH HOH . Q 8 HOH A 85 985 52 HOH HOH . Q 8 HOH A 86 986 155 HOH HOH . Q 8 HOH A 87 987 42 HOH HOH . Q 8 HOH A 88 988 91 HOH HOH . Q 8 HOH A 89 989 4 HOH HOH . Q 8 HOH A 90 990 25 HOH HOH . Q 8 HOH A 91 991 17 HOH HOH . Q 8 HOH A 92 992 45 HOH HOH . Q 8 HOH A 93 993 108 HOH HOH . Q 8 HOH A 94 994 28 HOH HOH . Q 8 HOH A 95 995 45 HOH HOH . Q 8 HOH A 96 996 85 HOH HOH . Q 8 HOH A 97 997 36 HOH HOH . Q 8 HOH A 98 998 23 HOH HOH . Q 8 HOH A 99 999 74 HOH HOH . Q 8 HOH A 100 1000 20 HOH HOH . Q 8 HOH A 101 1001 37 HOH HOH . Q 8 HOH A 102 1002 43 HOH HOH . Q 8 HOH A 103 1003 220 HOH HOH . Q 8 HOH A 104 1004 79 HOH HOH . Q 8 HOH A 105 1005 8 HOH HOH . Q 8 HOH A 106 1006 116 HOH HOH . Q 8 HOH A 107 1007 40 HOH HOH . Q 8 HOH A 108 1008 7 HOH HOH . Q 8 HOH A 109 1009 78 HOH HOH . Q 8 HOH A 110 1010 132 HOH HOH . Q 8 HOH A 111 1011 13 HOH HOH . Q 8 HOH A 112 1012 110 HOH HOH . Q 8 HOH A 113 1013 5 HOH HOH . Q 8 HOH A 114 1014 30 HOH HOH . Q 8 HOH A 115 1015 124 HOH HOH . Q 8 HOH A 116 1016 69 HOH HOH . Q 8 HOH A 117 1017 15 HOH HOH . Q 8 HOH A 118 1018 9 HOH HOH . Q 8 HOH A 119 1019 46 HOH HOH . Q 8 HOH A 120 1020 12 HOH HOH . Q 8 HOH A 121 1021 43 HOH HOH . Q 8 HOH A 122 1022 65 HOH HOH . Q 8 HOH A 123 1023 74 HOH HOH . Q 8 HOH A 124 1024 31 HOH HOH . Q 8 HOH A 125 1025 19 HOH HOH . Q 8 HOH A 126 1026 80 HOH HOH . Q 8 HOH A 127 1027 104 HOH HOH . Q 8 HOH A 128 1028 10 HOH HOH . Q 8 HOH A 129 1029 28 HOH HOH . Q 8 HOH A 130 1030 145 HOH HOH . Q 8 HOH A 131 1031 32 HOH HOH . Q 8 HOH A 132 1032 27 HOH HOH . Q 8 HOH A 133 1033 1 HOH HOH . Q 8 HOH A 134 1034 41 HOH HOH . Q 8 HOH A 135 1035 2 HOH HOH . Q 8 HOH A 136 1036 99 HOH HOH . Q 8 HOH A 137 1037 72 HOH HOH . Q 8 HOH A 138 1038 131 HOH HOH . Q 8 HOH A 139 1039 244 HOH HOH . Q 8 HOH A 140 1040 39 HOH HOH . Q 8 HOH A 141 1041 1 HOH HOH . Q 8 HOH A 142 1042 104 HOH HOH . Q 8 HOH A 143 1043 130 HOH HOH . Q 8 HOH A 144 1044 14 HOH HOH . Q 8 HOH A 145 1045 6 HOH HOH . Q 8 HOH A 146 1046 94 HOH HOH . Q 8 HOH A 147 1047 18 HOH HOH . Q 8 HOH A 148 1048 22 HOH HOH . Q 8 HOH A 149 1049 73 HOH HOH . Q 8 HOH A 150 1050 117 HOH HOH . Q 8 HOH A 151 1051 96 HOH HOH . Q 8 HOH A 152 1052 187 HOH HOH . Q 8 HOH A 153 1053 64 HOH HOH . Q 8 HOH A 154 1054 57 HOH HOH . Q 8 HOH A 155 1055 29 HOH HOH . Q 8 HOH A 156 1056 16 HOH HOH . Q 8 HOH A 157 1057 66 HOH HOH . Q 8 HOH A 158 1058 53 HOH HOH . Q 8 HOH A 159 1059 10 HOH HOH . Q 8 HOH A 160 1060 44 HOH HOH . Q 8 HOH A 161 1061 273 HOH HOH . Q 8 HOH A 162 1062 137 HOH HOH . Q 8 HOH A 163 1063 67 HOH HOH . Q 8 HOH A 164 1064 34 HOH HOH . Q 8 HOH A 165 1065 84 HOH HOH . Q 8 HOH A 166 1066 53 HOH HOH . Q 8 HOH A 167 1067 113 HOH HOH . Q 8 HOH A 168 1068 51 HOH HOH . Q 8 HOH A 169 1069 82 HOH HOH . Q 8 HOH A 170 1070 23 HOH HOH . Q 8 HOH A 171 1071 83 HOH HOH . Q 8 HOH A 172 1072 263 HOH HOH . Q 8 HOH A 173 1073 22 HOH HOH . Q 8 HOH A 174 1074 38 HOH HOH . Q 8 HOH A 175 1075 13 HOH HOH . Q 8 HOH A 176 1076 257 HOH HOH . Q 8 HOH A 177 1077 148 HOH HOH . Q 8 HOH A 178 1078 202 HOH HOH . Q 8 HOH A 179 1079 265 HOH HOH . Q 8 HOH A 180 1080 58 HOH HOH . Q 8 HOH A 181 1081 39 HOH HOH . Q 8 HOH A 182 1082 71 HOH HOH . Q 8 HOH A 183 1083 33 HOH HOH . Q 8 HOH A 184 1084 34 HOH HOH . Q 8 HOH A 185 1085 198 HOH HOH . Q 8 HOH A 186 1086 181 HOH HOH . Q 8 HOH A 187 1087 54 HOH HOH . Q 8 HOH A 188 1088 10 HOH HOH . Q 8 HOH A 189 1089 55 HOH HOH . Q 8 HOH A 190 1090 20 HOH HOH . Q 8 HOH A 191 1091 9 HOH HOH . Q 8 HOH A 192 1092 271 HOH HOH . Q 8 HOH A 193 1093 38 HOH HOH . Q 8 HOH A 194 1094 268 HOH HOH . Q 8 HOH A 195 1095 62 HOH HOH . Q 8 HOH A 196 1096 189 HOH HOH . Q 8 HOH A 197 1097 22 HOH HOH . Q 8 HOH A 198 1098 48 HOH HOH . Q 8 HOH A 199 1099 267 HOH HOH . Q 8 HOH A 200 1100 264 HOH HOH . Q 8 HOH A 201 1101 24 HOH HOH . Q 8 HOH A 202 1102 96 HOH HOH . Q 8 HOH A 203 1103 59 HOH HOH . Q 8 HOH A 204 1104 49 HOH HOH . Q 8 HOH A 205 1105 187 HOH HOH . Q 8 HOH A 206 1106 270 HOH HOH . Q 8 HOH A 207 1107 87 HOH HOH . Q 8 HOH A 208 1108 159 HOH HOH . Q 8 HOH A 209 1109 61 HOH HOH . Q 8 HOH A 210 1110 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 6 74.3 65.823 0.964 1 81.79 ? S DMS 805 A 1 HETATM 2 O O DMS . . . F 6 75.062 65.712 -0.329 1 88.4 ? O DMS 805 A 1 HETATM 3 C C1 DMS . . . F 6 75.503 65.679 2.314 1 75.06 ? C1 DMS 805 A 1 HETATM 4 C C2 DMS . . . F 6 73.649 67.492 1.109 1 21.57 ? C2 DMS 805 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #